Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.39675 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.38909 * 120.07682 * 179.72491 * 4 2 1 6 6 C 1.38104 * 119.92467 * 179.74611 * 5 4 2 7 7 C 1.38288 * 120.07232 * 0.55363 * 6 5 4 8 8 C 1.50706 * 119.92585 * 179.71819 * 7 6 5 9 9 H 1.08996 * 110.33468 * 207.22861 * 8 7 6 10 10 C 1.54476 * 110.36831 * 84.98038 * 8 7 6 11 11 C 1.54516 * 104.06310 * 217.19330 * 10 8 7 12 12 C 1.54485 * 104.06180 * 359.97438 * 11 10 8 13 13 H 1.08992 * 110.37335 * 265.04142 * 12 11 10 14 14 C 1.50693 * 110.37163 * 142.80934 * 12 11 10 15 15 H 1.08003 * 120.00326 * 0.02562 * 14 12 11 16 16 C 1.37872 * 120.00323 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99993 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00541 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46856 * 59.99877 * 18 16 14 20 20 H 1.48492 * 109.47349 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47042 * 299.99981 * 18 16 14 22 22 O 1.44424 * 104.80174 * 23.98172 * 12 11 10 23 23 C 1.38283 * 120.15369 * 359.70146 * 7 6 5 24 24 C 1.38110 * 120.07007 * 0.02562 * 23 7 6 25 25 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 26 26 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 27 27 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 28 28 H 1.09005 * 109.47136 * 239.99732 * 3 2 1 29 29 H 1.08996 * 109.47576 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.47024 * 120.00116 * 3 2 1 31 31 H 1.08001 * 120.04020 * 0.02562 * 5 4 2 32 32 H 1.07996 * 119.96736 * 180.27476 * 6 5 4 33 33 H 1.09001 * 110.51682 * 335.83471 * 10 8 7 34 34 H 1.09000 * 110.51330 * 98.54718 * 10 8 7 35 35 H 1.08999 * 110.51573 * 118.64415 * 11 10 8 36 36 H 1.09000 * 110.50994 * 241.35417 * 11 10 8 37 37 H 0.97001 * 120.00325 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.96620 * 180.02562 * 23 7 6 39 39 H 1.08002 * 120.03112 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 3.5524 -1.2115 -0.0052 6 6 4.2398 -2.4093 0.0006 7 6 3.5468 -3.6060 0.0007 8 6 4.3002 -4.9112 0.0006 9 1 3.7025 -5.6935 -0.4670 10 6 4.6788 -5.3135 1.4432 11 6 6.0806 -5.9476 1.3006 12 6 6.3828 -5.8539 -0.2115 13 1 6.1079 -6.7825 -0.7116 14 6 7.8413 -5.5495 -0.4372 15 1 8.5051 -5.4312 0.4065 16 6 8.3285 -5.4221 -1.7206 17 7 7.5204 -5.5668 -2.7481 18 14 10.1366 -5.0455 -2.0004 19 1 10.9648 -6.1264 -1.4080 20 1 10.4044 -4.9587 -3.4584 21 1 10.4780 -3.7514 -1.3570 22 8 5.5626 -4.7635 -0.6849 23 6 2.1639 -3.6078 0.0011 24 6 1.4703 -2.4135 0.0009 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 2.8242 1.3264 -0.8900 29 1 1.4893 2.0972 -0.0005 30 1 2.8242 1.3264 0.8900 31 1 4.0943 -0.2773 -0.0097 32 1 5.3198 -2.4115 0.0006 33 1 4.7210 -4.4344 2.0864 34 1 3.9686 -6.0412 1.8357 35 1 6.8158 -5.3820 1.8731 36 1 6.0633 -6.9888 1.6225 37 1 7.8632 -5.4775 -3.6511 38 1 1.6257 -4.5442 0.0015 39 1 0.3903 -2.4157 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686234189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = -12.590911 kcal Electronic energy + Delta-G solvation = -19390.048375 eV Core-core repulsion = 16490.566243 eV Total energy + Delta-G solvation = -2899.482132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47557 -37.95477 -35.85547 -32.61076 -30.94861 -30.67864 -30.45401 -28.11847 -27.64175 -25.18822 -23.49964 -22.02939 -21.32549 -20.04704 -19.53123 -17.23720 -16.61551 -15.70080 -15.07444 -14.99421 -14.94798 -14.37924 -14.07665 -13.95632 -13.22570 -12.96544 -12.85006 -12.70439 -12.51994 -12.27679 -12.12636 -11.92940 -11.73599 -11.38254 -10.87785 -10.65514 -10.52393 -10.39213 -10.19242 -9.96738 -9.61755 -9.30917 -9.04936 -8.55245 -8.48590 -8.02659 -6.98170 -5.97465 -4.10105 1.86696 1.98770 3.20459 3.35082 3.39630 3.41883 4.26635 4.45424 4.91378 4.99193 5.08109 5.20506 5.31142 5.34647 5.47000 5.52173 5.58906 5.62850 5.64915 5.74815 5.86672 5.89722 5.96034 6.12559 6.30177 6.38588 6.45787 6.53688 6.62438 6.75356 6.87601 6.88221 6.95897 7.23200 7.31754 7.39622 7.57966 7.71620 7.92549 8.28082 8.61268 9.01799 9.60285 11.10443 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.004777 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.006190 B = 5859.567221 C = 6476.475935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.645 5.645 3 C 0.100 3.900 4 C 0.199 3.801 5 C -0.196 4.196 6 C -0.042 4.042 7 C -0.116 4.116 8 C 0.107 3.893 9 H 0.054 0.946 10 C -0.143 4.143 11 C -0.147 4.147 12 C 0.205 3.795 13 H 0.026 0.974 14 C -0.529 4.529 15 H 0.063 0.937 16 C 0.077 3.923 17 N -0.864 5.864 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 O -0.345 6.345 23 C -0.073 4.073 24 C -0.201 4.201 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.262 0.738 38 H 0.117 0.883 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 9.245 6.155 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.359 5.359 3 C -0.044 4.044 4 C 0.100 3.900 5 C -0.218 4.218 6 C -0.061 4.061 7 C -0.117 4.117 8 C 0.048 3.952 9 H 0.072 0.928 10 C -0.181 4.181 11 C -0.185 4.185 12 C 0.149 3.851 13 H 0.044 0.956 14 C -0.567 4.567 15 H 0.081 0.919 16 C -0.129 4.129 17 N -0.500 5.500 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 O -0.264 6.264 23 C -0.092 4.092 24 C -0.223 4.223 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.192 9.572 5.795 17.298 hybrid contribution 0.799 0.134 -0.108 0.817 sum -12.394 9.705 5.686 16.737 Atomic orbital electron populations 1.21571 0.80100 1.02267 1.00655 1.46207 1.04565 1.03215 1.81929 1.21524 0.96795 0.84851 1.01204 1.17764 0.91236 0.85285 0.95737 1.20646 0.91790 0.98561 1.10797 1.20920 1.00707 0.90730 0.93752 1.19683 0.92930 0.95100 1.04022 1.21502 0.89524 0.92297 0.91841 0.92849 1.22935 0.97690 1.00015 0.97423 1.23053 0.95019 0.99099 1.01311 1.20505 0.90853 0.87274 0.86423 0.95585 1.21003 0.91765 1.51574 0.92327 0.91930 1.25084 0.97604 0.93965 0.96215 1.70026 1.34780 1.46839 0.98396 0.86680 0.85274 0.79052 0.77083 1.20113 1.21203 1.20076 1.89504 1.20799 1.51277 1.64869 1.20666 0.93421 0.97055 0.98016 1.20489 0.98893 0.91077 1.11835 0.93918 0.92055 0.91455 0.92960 0.91402 0.93019 0.86613 0.84986 0.91924 0.92401 0.91834 0.92809 0.92862 0.86522 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 10.16 59.85 0.61 1.50 16 2 N -0.64 -7.86 3.41 -187.55 -0.64 -8.50 16 3 C 0.10 0.98 9.40 59.85 0.56 1.54 16 4 C 0.20 3.01 6.55 -83.79 -0.55 2.46 16 5 C -0.20 -3.23 9.31 -39.38 -0.37 -3.60 16 6 C -0.04 -0.81 9.36 -39.61 -0.37 -1.19 16 7 C -0.12 -2.21 4.95 -104.58 -0.52 -2.73 16 8 C 0.11 2.28 3.50 -27.11 -0.09 2.18 16 9 H 0.05 1.11 8.09 -51.93 -0.42 0.69 16 10 C -0.14 -2.71 6.62 -25.16 -0.17 -2.88 16 11 C -0.15 -3.16 6.62 -25.16 -0.17 -3.32 16 12 C 0.20 5.42 3.06 -27.11 -0.08 5.33 16 13 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 14 C -0.53 -15.10 8.77 -34.45 -0.30 -15.40 16 15 H 0.06 1.72 7.57 -52.48 -0.40 1.33 16 16 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 17 N -0.86 -26.13 13.07 55.43 0.72 -25.40 16 18 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 O -0.35 -9.17 9.79 -35.23 -0.34 -9.52 16 23 C -0.07 -1.19 9.70 -39.61 -0.38 -1.57 16 24 C -0.20 -2.97 9.21 -39.38 -0.36 -3.34 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 27 H 0.07 0.61 6.20 -51.93 -0.32 0.28 16 28 H 0.05 0.53 7.94 -51.93 -0.41 0.11 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.05 0.50 7.96 -51.93 -0.41 0.09 16 31 H 0.12 1.70 6.74 -52.49 -0.35 1.35 16 32 H 0.13 2.76 7.53 -52.49 -0.40 2.37 16 33 H 0.06 1.15 7.86 -51.93 -0.41 0.74 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.37 7.71 -51.93 -0.40 0.96 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.12 1.42 6.14 -52.49 -0.32 1.09 16 LS Contribution 318.14 15.07 4.79 4.79 Total: -1.00 -32.09 318.14 -8.69 -40.78 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.91 Total: 0.13 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -2.29 Total: -18.89 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.08 Total: -33.90 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.34 Total: -9.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.09 -8.69 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.186 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds