Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.39675 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.38909 * 120.07682 * 179.72491 * 4 2 1 6 6 C 1.38104 * 119.92467 * 179.74611 * 5 4 2 7 7 C 1.38288 * 120.07232 * 0.55363 * 6 5 4 8 8 C 1.50706 * 119.92585 * 179.71819 * 7 6 5 9 9 H 1.08996 * 110.33468 * 207.22861 * 8 7 6 10 10 C 1.54476 * 110.36831 * 84.98038 * 8 7 6 11 11 C 1.54516 * 104.06310 * 217.19330 * 10 8 7 12 12 C 1.54485 * 104.06180 * 359.97438 * 11 10 8 13 13 H 1.08992 * 110.37335 * 265.04142 * 12 11 10 14 14 C 1.50693 * 110.37163 * 142.80934 * 12 11 10 15 15 H 1.08003 * 120.00326 * 0.02562 * 14 12 11 16 16 C 1.37872 * 120.00323 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99993 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00541 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46856 * 59.99877 * 18 16 14 20 20 H 1.48492 * 109.47349 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47042 * 299.99981 * 18 16 14 22 22 O 1.44424 * 104.80174 * 23.98172 * 12 11 10 23 23 C 1.38283 * 120.15369 * 359.70146 * 7 6 5 24 24 C 1.38110 * 120.07007 * 0.02562 * 23 7 6 25 25 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 26 26 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 27 27 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 28 28 H 1.09005 * 109.47136 * 239.99732 * 3 2 1 29 29 H 1.08996 * 109.47576 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.47024 * 120.00116 * 3 2 1 31 31 H 1.08001 * 120.04020 * 0.02562 * 5 4 2 32 32 H 1.07996 * 119.96736 * 180.27476 * 6 5 4 33 33 H 1.09001 * 110.51682 * 335.83471 * 10 8 7 34 34 H 1.09000 * 110.51330 * 98.54718 * 10 8 7 35 35 H 1.08999 * 110.51573 * 118.64415 * 11 10 8 36 36 H 1.09000 * 110.50994 * 241.35417 * 11 10 8 37 37 H 0.97001 * 120.00325 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.96620 * 180.02562 * 23 7 6 39 39 H 1.08002 * 120.03112 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 3.5524 -1.2115 -0.0052 6 6 4.2398 -2.4093 0.0006 7 6 3.5468 -3.6060 0.0007 8 6 4.3002 -4.9112 0.0006 9 1 3.7025 -5.6935 -0.4670 10 6 4.6788 -5.3135 1.4432 11 6 6.0806 -5.9476 1.3006 12 6 6.3828 -5.8539 -0.2115 13 1 6.1079 -6.7825 -0.7116 14 6 7.8413 -5.5495 -0.4372 15 1 8.5051 -5.4312 0.4065 16 6 8.3285 -5.4221 -1.7206 17 7 7.5204 -5.5668 -2.7481 18 14 10.1366 -5.0455 -2.0004 19 1 10.9648 -6.1264 -1.4080 20 1 10.4044 -4.9587 -3.4584 21 1 10.4780 -3.7514 -1.3570 22 8 5.5626 -4.7635 -0.6849 23 6 2.1639 -3.6078 0.0011 24 6 1.4703 -2.4135 0.0009 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 2.8242 1.3264 -0.8900 29 1 1.4893 2.0972 -0.0005 30 1 2.8242 1.3264 0.8900 31 1 4.0943 -0.2773 -0.0097 32 1 5.3198 -2.4115 0.0006 33 1 4.7210 -4.4344 2.0864 34 1 3.9686 -6.0412 1.8357 35 1 6.8158 -5.3820 1.8731 36 1 6.0633 -6.9888 1.6225 37 1 7.8632 -5.4775 -3.6511 38 1 1.6257 -4.5442 0.0015 39 1 0.3903 -2.4157 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686234189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = -31.539675 kcal Electronic energy + Delta-G solvation = -19390.870055 eV Core-core repulsion = 16490.566243 eV Total energy + Delta-G solvation = -2900.303813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80291 -39.55869 -37.02693 -34.71511 -32.61888 -32.01411 -31.94344 -29.33037 -28.94026 -26.77099 -24.95962 -23.38231 -22.79971 -21.75809 -20.97213 -18.86553 -18.17762 -17.05166 -16.73228 -16.52745 -16.11715 -15.89008 -15.57001 -15.41549 -14.53886 -14.40197 -14.28587 -14.16650 -13.71626 -13.60905 -13.42712 -13.12756 -12.83258 -12.78790 -12.74716 -12.44297 -12.21973 -11.96865 -11.80748 -11.65793 -11.29849 -11.03414 -10.72856 -10.51590 -10.00787 -9.77658 -8.16210 -8.09061 -6.36730 0.58732 0.68145 1.39847 1.43687 1.51181 2.29863 2.40677 2.93267 3.09906 3.71090 3.97348 4.01161 4.12252 4.14784 4.22639 4.26986 4.42179 4.53300 4.58045 4.58471 4.71586 4.75577 4.82851 4.87521 4.89233 4.92936 4.96174 5.04639 5.09472 5.23748 5.29613 5.40756 5.51260 5.57755 5.73742 5.94773 5.97199 6.16819 6.42342 6.56816 6.60262 6.94342 7.38736 8.92677 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.004777 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.006190 B = 5859.567221 C = 6476.475935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.646 5.646 3 C 0.092 3.908 4 C 0.204 3.796 5 C -0.205 4.205 6 C -0.064 4.064 7 C -0.144 4.144 8 C 0.101 3.899 9 H 0.052 0.948 10 C -0.129 4.129 11 C -0.139 4.139 12 C 0.196 3.804 13 H -0.007 1.007 14 C -0.552 4.552 15 H 0.066 0.934 16 C 0.021 3.979 17 N -0.905 5.905 18 Si 0.964 3.036 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.270 1.270 22 O -0.381 6.381 23 C -0.069 4.069 24 C -0.197 4.197 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.262 0.738 38 H 0.139 0.861 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.897 10.589 7.190 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.358 5.358 3 C -0.050 4.050 4 C 0.101 3.899 5 C -0.227 4.227 6 C -0.083 4.083 7 C -0.146 4.146 8 C 0.042 3.958 9 H 0.070 0.930 10 C -0.167 4.167 11 C -0.177 4.177 12 C 0.140 3.860 13 H 0.011 0.989 14 C -0.590 4.590 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.788 3.212 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.195 1.195 22 O -0.301 6.301 23 C -0.088 4.088 24 C -0.219 4.219 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.156 0.844 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.969 10.940 6.852 19.766 hybrid contribution 1.194 -0.190 -0.428 1.282 sum -13.775 10.751 6.424 18.617 Atomic orbital electron populations 1.21822 0.77972 1.03653 1.01825 1.46539 1.06033 1.02774 1.80478 1.21706 0.97596 0.84812 1.00920 1.17911 0.90823 0.86935 0.94183 1.20691 0.92890 0.97906 1.11224 1.20727 0.99252 0.92280 0.96063 1.19596 0.94182 0.93778 1.07042 1.21707 0.87678 0.93851 0.92516 0.93019 1.22866 0.96668 1.00824 0.96300 1.22932 0.96543 1.00602 0.97632 1.20418 0.90295 0.85970 0.89313 0.98899 1.21452 0.93335 1.51391 0.92776 0.91629 1.25998 1.02555 0.93623 0.95863 1.70177 1.37056 1.48268 0.98765 0.85548 0.79373 0.79208 0.77115 1.18591 1.20742 1.19547 1.89418 1.23254 1.51024 1.66384 1.20879 0.92141 0.98801 0.96971 1.20825 1.00441 0.90237 1.10399 0.92727 0.89681 0.91180 0.93516 0.88316 0.93086 0.85585 0.88380 0.91335 0.89087 0.92189 0.90818 0.92917 0.84362 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 10.16 127.77 1.30 2.56 16 2 N -0.65 -13.77 3.41 -747.29 -2.55 -16.32 16 3 C 0.09 1.56 9.40 127.77 1.20 2.76 16 4 C 0.20 5.77 6.55 38.21 0.25 6.02 16 5 C -0.20 -6.75 9.31 22.40 0.21 -6.55 16 6 C -0.06 -2.57 9.36 22.25 0.21 -2.36 16 7 C -0.14 -5.58 4.95 -19.84 -0.10 -5.68 16 8 C 0.10 4.38 3.50 30.35 0.11 4.48 16 9 H 0.05 2.20 8.09 -2.39 -0.02 2.18 16 10 C -0.13 -4.84 6.62 31.61 0.21 -4.63 16 11 C -0.14 -6.04 6.62 31.61 0.21 -5.83 16 12 C 0.20 10.80 3.06 30.35 0.09 10.90 16 13 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 14 C -0.55 -32.61 8.77 25.60 0.22 -32.38 16 15 H 0.07 3.70 7.57 -2.91 -0.02 3.68 16 16 C 0.02 1.26 5.43 84.65 0.46 1.72 16 17 N -0.91 -56.91 13.07 21.45 0.28 -56.63 16 18 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 O -0.38 -21.31 9.79 -148.98 -1.46 -22.76 16 23 C -0.07 -2.15 9.70 22.25 0.22 -1.94 16 24 C -0.20 -5.32 9.21 22.40 0.21 -5.11 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 0.83 7.92 -2.39 -0.02 0.81 16 27 H 0.07 0.97 6.20 -2.39 -0.01 0.95 16 28 H 0.05 0.85 7.94 -2.38 -0.02 0.83 16 29 H 0.10 1.06 7.79 -2.39 -0.02 1.04 16 30 H 0.05 0.88 7.96 -2.38 -0.02 0.86 16 31 H 0.13 3.73 6.74 -2.91 -0.02 3.71 16 32 H 0.10 4.47 7.53 -2.91 -0.02 4.44 16 33 H 0.07 2.48 7.86 -2.39 -0.02 2.46 16 34 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.06 2.60 7.71 -2.39 -0.02 2.58 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.15 3.00 6.14 -2.91 -0.02 2.98 16 Total: -1.00 -72.60 318.14 4.11 -68.48 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.02 Total: 15.86 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.79 Total: -36.03 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -2.27 Total: -72.95 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.46 Total: -22.76 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.60 4.11 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.942 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds