Wall clock time and date at job start Mon Mar 30 2020 06:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99817 * 2 1 4 4 C 1.39680 * 120.00410 * 179.97438 * 2 1 3 5 5 C 1.38908 * 120.07127 * 0.02562 * 4 2 1 6 6 C 1.38108 * 119.92217 * 179.97438 * 5 4 2 7 7 C 1.38282 * 120.07556 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.92673 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.86715 * 339.55031 * 8 7 6 10 10 C 1.54102 * 109.88129 * 100.71090 * 8 7 6 11 11 C 1.54803 * 104.18929 * 121.45146 * 10 8 7 12 12 C 1.54997 * 102.09111 * 20.88681 * 11 10 8 13 13 H 1.08994 * 110.75867 * 81.53867 * 12 11 10 14 14 C 1.50708 * 110.61876 * 204.47249 * 12 11 10 15 15 H 1.07991 * 119.99789 * 355.52568 * 14 12 11 16 16 C 1.37877 * 120.00008 * 175.51879 * 14 12 11 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 O 1.43745 * 109.87958 * 218.54381 * 8 7 6 23 23 C 1.38292 * 120.15106 * 0.26776 * 7 6 5 24 24 C 1.38108 * 120.06922 * 359.46207 * 23 7 6 25 25 H 1.09003 * 109.47291 * 269.99870 * 1 2 3 26 26 H 1.08996 * 109.47140 * 30.00400 * 1 2 3 27 27 H 1.09005 * 109.46494 * 150.00740 * 1 2 3 28 28 H 1.08998 * 109.47029 * 270.00055 * 3 2 1 29 29 H 1.08999 * 109.47408 * 29.99642 * 3 2 1 30 30 H 1.09002 * 109.47388 * 149.99832 * 3 2 1 31 31 H 1.07998 * 120.03703 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.96158 * 179.97438 * 6 5 4 33 33 H 1.08997 * 110.49059 * 240.13277 * 10 8 7 34 34 H 1.09002 * 110.48653 * 2.64438 * 10 8 7 35 35 H 1.08993 * 110.91395 * 262.68320 * 11 10 8 36 36 H 1.09000 * 110.90822 * 139.07784 * 11 10 8 37 37 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 38 38 H 1.07995 * 119.96532 * 179.70617 * 23 7 6 39 39 H 1.07998 * 120.03442 * 180.26892 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1635 -1.2096 0.0005 5 6 1.4705 -2.4135 0.0005 6 6 2.1642 -3.6077 0.0005 7 6 3.5471 -3.6058 0.0000 8 6 4.3006 -4.9109 -0.0006 9 1 3.6542 -5.7120 0.3577 10 6 4.7954 -5.2297 -1.4248 11 6 6.3322 -5.3417 -1.2764 12 6 6.4927 -5.6174 0.2404 13 1 6.3284 -6.6721 0.4608 14 6 7.8548 -5.1833 0.7175 15 1 8.5830 -4.8159 0.0098 16 6 8.1710 -5.2551 2.0576 17 7 9.3594 -4.8758 2.4740 18 14 6.9115 -5.8911 3.2817 19 1 6.0979 -4.7572 3.7892 20 1 7.6108 -6.5455 4.4166 21 1 6.0245 -6.8763 2.6125 22 8 5.4610 -4.8056 0.8413 23 6 4.2400 -2.4091 0.0051 24 6 3.5525 -1.2113 -0.0006 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 2.3791 1.5834 -1.0276 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 0.3905 -2.4156 0.0005 32 1 1.6261 -4.5441 0.0010 33 1 4.3758 -6.1738 -1.7720 34 1 4.5340 -4.4225 -2.1091 35 1 6.8192 -4.4074 -1.5556 36 1 6.7204 -6.1723 -1.8659 37 1 9.5820 -4.9266 3.4167 38 1 5.3200 -2.4111 0.0094 39 1 4.0943 -0.2771 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686234193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:59 Heat of formation + Delta-G solvation = -7.405432 kcal Electronic energy + Delta-G solvation = -19560.476043 eV Core-core repulsion = 16661.218770 eV Total energy + Delta-G solvation = -2899.257273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64974 -38.26362 -35.95588 -32.61018 -31.24367 -30.89204 -30.63484 -28.18881 -28.04480 -25.31728 -23.56367 -22.09885 -21.31071 -20.16996 -19.72952 -17.35482 -16.85337 -15.87306 -15.42408 -15.22267 -15.11310 -14.43979 -14.26547 -13.81396 -13.34912 -13.09634 -12.86500 -12.75963 -12.55199 -12.40680 -12.36138 -12.04952 -11.98424 -11.50587 -10.91284 -10.69777 -10.65134 -10.51769 -10.31537 -9.74622 -9.60551 -9.49608 -9.35173 -8.59048 -8.58493 -8.38853 -7.07177 -6.07755 -4.16304 1.76521 1.87766 3.13725 3.45593 3.52117 3.62409 4.14411 4.53691 4.86600 4.90217 4.95671 5.11055 5.21985 5.28119 5.32216 5.46993 5.49248 5.49969 5.53487 5.58789 5.63948 5.79035 5.83928 6.01303 6.11674 6.17584 6.26679 6.43164 6.49095 6.50726 6.68142 6.71024 6.81699 7.12905 7.13804 7.26829 7.31511 7.62615 7.64651 8.25067 8.47191 8.92761 9.55667 11.02639 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025594 B = 0.005254 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.754533 B = 5328.122686 C = 5630.847145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.644 5.644 3 C 0.096 3.904 4 C 0.203 3.797 5 C -0.202 4.202 6 C -0.071 4.071 7 C -0.127 4.127 8 C 0.115 3.885 9 H 0.055 0.945 10 C -0.146 4.146 11 C -0.134 4.134 12 C 0.166 3.834 13 H 0.030 0.970 14 C -0.516 4.516 15 H 0.080 0.920 16 C 0.084 3.916 17 N -0.894 5.894 18 Si 0.901 3.099 19 H -0.274 1.274 20 H -0.300 1.300 21 H -0.268 1.268 22 O -0.373 6.373 23 C -0.040 4.040 24 C -0.198 4.198 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.265 0.735 38 H 0.133 0.867 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.460 7.662 -6.532 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.358 5.358 3 C -0.048 4.048 4 C 0.103 3.897 5 C -0.224 4.224 6 C -0.090 4.090 7 C -0.129 4.129 8 C 0.056 3.944 9 H 0.073 0.927 10 C -0.184 4.184 11 C -0.172 4.172 12 C 0.111 3.889 13 H 0.047 0.953 14 C -0.553 4.553 15 H 0.098 0.902 16 C -0.121 4.121 17 N -0.531 5.531 18 Si 0.730 3.270 19 H -0.199 1.199 20 H -0.227 1.227 21 H -0.193 1.193 22 O -0.294 6.294 23 C -0.059 4.059 24 C -0.220 4.220 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.150 0.850 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.421 7.974 -6.198 20.137 hybrid contribution -0.695 -0.284 0.569 0.942 sum -18.116 7.691 -5.628 20.470 Atomic orbital electron populations 1.21551 0.80046 1.02238 1.00791 1.46223 1.04632 1.03216 1.81706 1.21579 0.97398 0.84933 1.00868 1.17800 0.91254 0.85383 0.95246 1.20494 0.98963 0.91068 1.11918 1.20675 0.93361 0.97087 0.97839 1.19789 0.93052 0.95197 1.04892 1.21308 0.89546 0.92683 0.90835 0.92709 1.22962 0.97571 1.00982 0.96852 1.23011 0.93260 1.01733 0.99207 1.21264 0.87874 0.91317 0.88413 0.95252 1.20929 0.94712 1.45347 0.94262 0.90152 1.25041 0.94932 0.93489 0.98614 1.69925 1.20530 1.46743 1.15909 0.86406 0.81060 0.79722 0.79786 1.19934 1.22724 1.19255 1.89091 1.21391 1.70955 1.47919 1.20923 1.00702 0.90743 0.93543 1.20703 0.91832 0.98668 1.10840 0.93803 0.91992 0.91451 0.93704 0.91986 0.91174 0.86535 0.86517 0.91878 0.91450 0.91146 0.91840 0.92506 0.84957 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 10.19 59.85 0.61 1.46 16 2 N -0.64 -7.56 3.41 -187.55 -0.64 -8.20 16 3 C 0.10 0.91 10.19 59.85 0.61 1.52 16 4 C 0.20 2.94 6.55 -83.79 -0.55 2.39 16 5 C -0.20 -2.85 9.21 -39.38 -0.36 -3.21 16 6 C -0.07 -1.09 9.67 -39.61 -0.38 -1.47 16 7 C -0.13 -2.29 4.77 -104.59 -0.50 -2.79 16 8 C 0.11 2.23 3.63 -27.31 -0.10 2.14 16 9 H 0.06 1.01 8.02 -51.93 -0.42 0.59 16 10 C -0.15 -2.53 6.63 -25.21 -0.17 -2.70 16 11 C -0.13 -2.71 6.55 -24.73 -0.16 -2.87 16 12 C 0.17 4.09 2.54 -26.82 -0.07 4.02 16 13 H 0.03 0.74 7.34 -51.93 -0.38 0.36 16 14 C -0.52 -14.86 9.41 -34.44 -0.32 -15.19 16 15 H 0.08 2.45 8.02 -52.49 -0.42 2.03 16 16 C 0.08 2.48 5.47 -17.82 -0.10 2.39 16 17 N -0.89 -27.71 13.96 55.43 0.77 -26.94 16 18 Si 0.90 23.70 26.33 -169.99 -4.48 19.23 16 19 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.27 -6.82 6.59 56.52 0.37 -6.45 16 22 O -0.37 -9.09 8.07 -35.23 -0.28 -9.37 16 23 C -0.04 -0.74 9.35 -39.61 -0.37 -1.11 16 24 C -0.20 -3.13 9.21 -39.38 -0.36 -3.50 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 27 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 8.07 -51.93 -0.42 0.05 16 30 H 0.07 0.70 6.20 -51.93 -0.32 0.38 16 31 H 0.12 1.35 6.14 -52.49 -0.32 1.03 16 32 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.09 7.69 -51.93 -0.40 0.69 16 35 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.13 2.64 7.74 -52.49 -0.41 2.23 16 39 H 0.12 1.67 6.14 -52.49 -0.32 1.35 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -32.53 312.53 -7.99 -40.52 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.85 Total: -1.03 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.22 Total: -18.92 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.13 Total: -35.14 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.28 Total: -9.37 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.48 Total: 19.23 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.53 -7.99 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.116 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds