Wall clock time and date at job start Mon Mar 30 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00150 * 2 1 4 4 C 1.39678 * 120.00056 * 180.02562 * 2 1 3 5 5 C 1.38922 * 120.07458 * 359.97438 * 4 2 1 6 6 C 1.38098 * 119.92272 * 179.97438 * 5 4 2 7 7 C 1.38278 * 120.07952 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.92956 * 179.97438 * 7 6 5 9 9 H 1.09004 * 110.35092 * 337.86319 * 8 7 6 10 10 C 1.54945 * 110.30698 * 100.00049 * 8 7 6 11 11 C 1.55307 * 100.94248 * 155.36244 * 10 8 7 12 12 C 1.54383 * 102.25355 * 325.86865 * 11 10 8 13 13 H 1.08997 * 109.82886 * 261.84487 * 12 11 10 14 14 C 1.50697 * 109.83313 * 140.86665 * 12 11 10 15 15 H 1.08006 * 120.00153 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99917 * 180.02562 * 14 12 11 17 17 N 1.31509 * 119.99986 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99642 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47143 * 90.00283 * 18 16 14 20 20 H 1.48504 * 109.46765 * 209.99831 * 18 16 14 21 21 H 1.48500 * 109.47366 * 329.99727 * 18 16 14 22 22 O 1.43236 * 107.58617 * 21.35375 * 12 11 10 23 23 C 1.38293 * 120.14794 * 0.27630 * 7 6 5 24 24 C 1.38108 * 120.07346 * 359.45324 * 23 7 6 25 25 H 1.09002 * 109.46901 * 269.99283 * 1 2 3 26 26 H 1.08997 * 109.47013 * 29.99781 * 1 2 3 27 27 H 1.09001 * 109.47219 * 149.99948 * 1 2 3 28 28 H 1.08996 * 109.46854 * 240.00351 * 3 2 1 29 29 H 1.09001 * 109.46581 * 359.97438 * 3 2 1 30 30 H 1.09003 * 109.47113 * 120.00292 * 3 2 1 31 31 H 1.08001 * 120.03491 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.95542 * 180.02562 * 6 5 4 33 33 H 1.08998 * 111.12670 * 37.44624 * 10 8 7 34 34 H 1.08998 * 111.13039 * 273.27956 * 10 8 7 35 35 H 1.09006 * 110.84840 * 84.05760 * 11 10 8 36 36 H 1.08995 * 110.85125 * 207.67776 * 11 10 8 37 37 H 0.97004 * 120.00051 * 180.02562 * 17 16 14 38 38 H 1.08000 * 119.96425 * 179.70144 * 23 7 6 39 39 H 1.08000 * 120.03486 * 180.27483 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4704 -2.4136 -0.0005 6 6 2.1640 -3.6078 -0.0016 7 6 3.5468 -3.6060 -0.0032 8 6 4.3004 -4.9111 -0.0038 9 1 3.6706 -5.7126 0.3822 10 6 4.7861 -5.2509 -1.4354 11 6 5.9990 -6.1698 -1.1247 12 6 6.5538 -5.5515 0.1765 13 1 7.3928 -4.8951 -0.0545 14 6 7.0006 -6.6450 1.1123 15 1 6.9030 -7.6799 0.8192 16 6 7.5330 -6.3243 2.3430 17 7 7.6505 -5.0642 2.7005 18 14 8.0874 -7.6799 3.5027 19 1 9.5149 -7.9982 3.2454 20 1 7.9269 -7.2258 4.9074 21 1 7.2612 -8.8930 3.2771 22 8 5.4979 -4.7958 0.7811 23 6 4.2399 -2.4093 0.0020 24 6 3.5525 -1.2114 -0.0026 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 2.8241 1.3264 -0.8900 29 1 1.4892 2.0972 -0.0005 30 1 2.8243 1.3264 0.8900 31 1 0.3904 -2.4157 -0.0005 32 1 1.6258 -4.5441 -0.0020 33 1 5.0999 -4.3528 -1.9673 34 1 4.0192 -5.7880 -1.9934 35 1 5.6748 -7.1972 -0.9585 36 1 6.7384 -6.1198 -1.9240 37 1 8.0254 -4.8386 3.5662 38 1 5.3199 -2.4114 0.0056 39 1 4.0943 -0.2772 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686234199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:01 Heat of formation + Delta-G solvation = -11.658307 kcal Electronic energy + Delta-G solvation = -19390.942624 eV Core-core repulsion = 16491.500932 eV Total energy + Delta-G solvation = -2899.441692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.47238 -37.97497 -35.85216 -32.55439 -30.94001 -30.69378 -30.46104 -28.11635 -27.62671 -25.16406 -23.53348 -21.98472 -21.22133 -20.13068 -19.61581 -17.19908 -16.43840 -15.85934 -15.33499 -15.04602 -14.80628 -14.45408 -14.15789 -13.52060 -13.30990 -13.14192 -12.74176 -12.59564 -12.45447 -12.10522 -12.05417 -11.91939 -11.71177 -11.56872 -10.85762 -10.57662 -10.50565 -10.39633 -10.25431 -10.08412 -9.77985 -9.27740 -9.12122 -8.48443 -8.46304 -7.78098 -6.96627 -5.91206 -4.04825 1.87481 1.99249 3.20885 3.34989 3.41858 3.44941 4.26283 4.48959 4.91308 4.99884 5.11386 5.20870 5.31897 5.35043 5.49947 5.52426 5.58689 5.61662 5.63153 5.63587 5.87753 5.90194 5.94360 6.13693 6.31772 6.38128 6.43753 6.52660 6.61581 6.68170 6.78975 6.89571 6.96278 7.23072 7.34302 7.39647 7.71835 7.73134 7.95804 8.36556 8.70186 9.13021 9.66562 11.15383 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030480 B = 0.004507 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.415400 B = 6210.796607 C = 6567.138274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.645 5.645 3 C 0.100 3.900 4 C 0.199 3.801 5 C -0.201 4.201 6 C -0.072 4.072 7 C -0.120 4.120 8 C 0.119 3.881 9 H 0.057 0.943 10 C -0.146 4.146 11 C -0.146 4.146 12 C 0.205 3.795 13 H 0.037 0.963 14 C -0.545 4.545 15 H 0.058 0.942 16 C 0.079 3.921 17 N -0.863 5.863 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 O -0.351 6.351 23 C -0.043 4.043 24 C -0.196 4.196 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.260 0.740 38 H 0.128 0.872 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.629 9.581 -7.273 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.359 5.359 3 C -0.044 4.044 4 C 0.099 3.901 5 C -0.223 4.223 6 C -0.091 4.091 7 C -0.122 4.122 8 C 0.060 3.940 9 H 0.074 0.926 10 C -0.184 4.184 11 C -0.183 4.183 12 C 0.150 3.850 13 H 0.055 0.945 14 C -0.582 4.582 15 H 0.076 0.924 16 C -0.126 4.126 17 N -0.499 5.499 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 O -0.270 6.270 23 C -0.061 4.061 24 C -0.218 4.218 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.635 9.993 -6.942 17.541 hybrid contribution 0.227 -0.777 0.600 1.007 sum -12.408 9.216 -6.342 16.707 Atomic orbital electron populations 1.21573 0.80105 1.02166 1.00755 1.46207 1.04564 1.03216 1.81954 1.21522 0.96790 0.84855 1.01189 1.17762 0.91237 0.85279 0.95782 1.20499 0.98894 0.91104 1.11778 1.20681 0.93484 0.97035 0.97864 1.19895 0.93099 0.95459 1.03781 1.21453 0.89998 0.91972 0.90536 0.92550 1.23246 0.98278 0.99683 0.97183 1.23221 0.96261 0.99334 0.99521 1.20282 0.86341 0.90347 0.88022 0.94495 1.21402 1.42159 0.92455 1.02226 0.92372 1.25046 0.94553 0.95132 0.97896 1.70034 1.42639 1.16431 1.20790 0.86693 0.78901 0.82469 0.80419 1.20633 1.21164 1.19853 1.88796 1.17778 1.72038 1.48427 1.20859 1.00418 0.90821 0.94037 1.20628 0.91801 0.98516 1.10832 0.93867 0.92078 0.91482 0.93063 0.91413 0.92927 0.86636 0.86512 0.91579 0.91908 0.91654 0.92336 0.93069 0.85362 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 10.16 59.85 0.61 1.50 16 2 N -0.65 -7.86 3.41 -187.55 -0.64 -8.50 16 3 C 0.10 0.97 9.40 59.85 0.56 1.53 16 4 C 0.20 3.00 6.55 -83.78 -0.55 2.46 16 5 C -0.20 -2.99 9.21 -39.38 -0.36 -3.35 16 6 C -0.07 -1.18 9.68 -39.62 -0.38 -1.56 16 7 C -0.12 -2.30 5.03 -104.59 -0.53 -2.82 16 8 C 0.12 2.53 3.64 -26.86 -0.10 2.43 16 9 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 10 C -0.15 -2.73 6.56 -24.48 -0.16 -2.89 16 11 C -0.15 -3.07 6.53 -24.78 -0.16 -3.23 16 12 C 0.21 5.40 3.35 -27.16 -0.09 5.30 16 13 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.54 -15.58 8.75 -34.44 -0.30 -15.88 16 15 H 0.06 1.62 7.52 -52.48 -0.39 1.22 16 16 C 0.08 2.30 5.41 -17.82 -0.10 2.20 16 17 N -0.86 -26.20 12.93 55.43 0.72 -25.49 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 O -0.35 -9.31 9.42 -35.23 -0.33 -9.64 16 23 C -0.04 -0.81 9.36 -39.61 -0.37 -1.18 16 24 C -0.20 -3.19 9.31 -39.38 -0.37 -3.56 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 27 H 0.07 0.59 6.20 -51.93 -0.32 0.27 16 28 H 0.05 0.49 7.95 -51.93 -0.41 0.07 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 30 H 0.05 0.53 7.95 -51.93 -0.41 0.12 16 31 H 0.12 1.43 6.14 -52.49 -0.32 1.10 16 32 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.37 7.65 -51.93 -0.40 0.97 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 2.60 7.67 -52.49 -0.40 2.19 16 39 H 0.12 1.67 6.73 -52.49 -0.35 1.32 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -32.37 318.13 -8.70 -41.06 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.92 Total: 0.02 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.30 Total: -19.05 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.08 Total: -33.98 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.33 Total: -9.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.37 -8.70 -41.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.404 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds