Wall clock time and date at job start Mon Mar 30 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46601 * 2 1 4 4 C 1.50692 * 109.47341 * 119.99961 * 2 1 3 5 5 H 1.08003 * 119.99922 * 120.00194 * 4 2 1 6 6 C 1.37872 * 120.00293 * 299.99751 * 4 2 1 7 7 N 1.31518 * 120.00342 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00011 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47154 * 89.99698 * 8 6 4 10 10 H 1.48498 * 109.47080 * 209.99756 * 8 6 4 11 11 H 1.48504 * 109.47081 * 329.99716 * 8 6 4 12 12 N 1.46496 * 109.46975 * 240.00526 * 2 1 3 13 13 C 1.39940 * 120.00354 * 84.99313 * 12 2 1 14 14 C 1.38861 * 120.01805 * 179.97438 * 13 12 2 15 15 C 1.38113 * 119.97987 * 179.97438 * 14 13 12 16 16 C 1.38704 * 120.01680 * 359.97438 * 15 14 13 17 17 O 1.36004 * 119.97592 * 180.02562 * 16 15 14 18 18 C 1.42905 * 116.99566 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47079 * 180.02562 * 18 17 16 20 20 C 1.52997 * 117.49591 * 243.74835 * 19 18 17 21 21 C 1.52999 * 117.49919 * 175.08788 * 19 18 17 22 22 C 1.38697 * 120.03774 * 0.27978 * 16 15 14 23 23 C 1.38111 * 120.02159 * 359.48438 * 22 16 15 24 24 H 1.08993 * 109.47324 * 59.99916 * 1 2 3 25 25 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46853 * 299.99474 * 1 2 3 27 27 H 0.97001 * 120.00193 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99906 * 264.99654 * 12 2 1 29 29 H 1.08001 * 120.01439 * 0.02562 * 14 13 12 30 30 H 1.07997 * 119.99386 * 180.02562 * 15 14 13 31 31 H 1.09004 * 109.47054 * 299.99757 * 18 17 16 32 32 H 1.09000 * 109.47187 * 59.99813 * 18 17 16 33 33 H 1.09006 * 115.54840 * 29.41375 * 19 18 17 34 34 H 1.08998 * 117.50225 * 359.97438 * 20 19 18 35 35 H 1.09002 * 117.50050 * 145.02213 * 20 19 18 36 36 H 1.08998 * 117.49742 * 214.97977 * 21 19 18 37 37 H 1.09000 * 117.49487 * 359.97438 * 21 19 18 38 38 H 1.07998 * 119.98783 * 179.72181 * 22 16 15 39 39 H 1.07999 * 120.00964 * 180.25449 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4826 7 7 2.1383 -0.8590 3.5565 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9762 1.9950 3.9068 11 1 0.8472 2.1765 1.4921 12 7 2.0183 -0.6905 -1.1962 13 6 2.1518 0.0076 -2.4017 14 6 2.6151 -0.6464 -3.5356 15 6 2.7461 0.0432 -4.7250 16 6 2.4145 1.3886 -4.7872 17 8 2.5433 2.0667 -5.9590 18 6 2.1843 3.4499 -5.9509 19 6 2.3935 4.0394 -7.3472 20 6 3.4443 5.1410 -7.4987 21 6 1.9552 5.4873 -7.5757 22 6 1.9567 2.0439 -3.6538 23 6 1.8205 1.3546 -2.4647 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9037 -0.5278 4.4375 28 1 2.2490 -1.6317 -1.1527 29 1 2.8722 -1.6943 -3.4877 30 1 3.1060 -0.4654 -5.6071 31 1 1.1367 3.5517 -5.6671 32 1 2.8084 3.9831 -5.2337 33 1 2.2738 3.3406 -8.1752 34 1 3.9863 5.4462 -6.6036 35 1 4.0157 5.1674 -8.4266 36 1 1.5476 5.7413 -8.5542 37 1 1.5175 6.0198 -6.7313 38 1 1.7030 3.0925 -3.7020 39 1 1.4600 1.8641 -1.5833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690118471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:26 Heat of formation + Delta-G solvation = 16.878366 kcal Electronic energy + Delta-G solvation = -18773.505027 eV Core-core repulsion = 15875.300779 eV Total energy + Delta-G solvation = -2898.204249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83233 -38.20216 -36.95187 -35.16664 -32.50311 -30.73533 -30.25791 -28.03666 -26.55917 -25.09580 -22.86536 -22.69666 -21.66835 -20.68014 -19.95439 -17.97291 -17.42555 -16.29063 -15.79358 -15.66061 -15.37871 -14.73136 -14.45832 -14.10412 -13.48330 -13.26093 -12.98174 -12.84457 -12.68019 -12.21169 -12.11504 -12.06821 -11.82087 -11.50930 -11.36807 -11.03639 -10.83998 -10.73556 -10.42244 -10.17984 -10.14799 -9.64689 -9.27333 -9.01809 -8.67524 -8.58660 -6.46238 -6.23101 -4.25146 1.74084 2.11180 3.17764 3.20770 3.26949 3.30105 3.60550 4.25725 4.28874 4.35208 4.50865 4.59119 4.75900 5.01007 5.10118 5.16714 5.23322 5.31584 5.34753 5.40118 5.57410 5.73841 5.76317 5.79269 5.93998 6.00120 6.19580 6.27481 6.40998 6.47764 6.54504 6.71432 6.78327 6.84808 7.06438 7.19796 7.45371 7.75155 8.00939 8.43414 8.62975 8.80952 9.37214 10.89550 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030559 B = 0.003881 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.028921 B = 7212.007601 C = 7816.296072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.242 3.758 3 H 0.037 0.963 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.266 1.266 12 N -0.721 5.721 13 C 0.207 3.793 14 C -0.176 4.176 15 C -0.097 4.097 16 C 0.044 3.956 17 O -0.321 6.321 18 C 0.094 3.906 19 C -0.153 4.153 20 C -0.177 4.177 21 C -0.173 4.173 22 C -0.153 4.153 23 C -0.170 4.170 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.267 0.733 28 H 0.395 0.605 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 9.170 -18.958 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.137 3.863 3 H 0.054 0.946 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.191 1.191 12 N -0.346 5.346 13 C 0.100 3.900 14 C -0.199 4.199 15 C -0.117 4.117 16 C -0.002 4.002 17 O -0.236 6.236 18 C 0.018 3.982 19 C -0.171 4.171 20 C -0.214 4.214 21 C -0.210 4.210 22 C -0.172 4.172 23 C -0.193 4.193 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.230 0.770 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.866 9.201 -18.726 20.882 hybrid contribution -0.634 0.591 0.526 1.014 sum -1.500 9.792 -18.199 20.721 Atomic orbital electron populations 1.22573 0.99882 1.01237 0.98832 1.19021 0.89625 0.93978 0.83630 0.94559 1.21054 1.32928 1.14440 0.88517 0.90270 1.24870 0.95581 0.96762 0.95562 1.69874 1.44956 1.40141 0.98046 0.86832 0.80604 0.83407 0.77217 1.20320 1.22157 1.19144 1.45136 1.70620 1.12150 1.06688 1.17972 0.93560 0.91553 0.86922 1.20365 1.08080 0.99893 0.91605 1.20008 1.02482 0.91308 0.97871 1.18558 1.04517 0.92224 0.84884 1.85965 1.83833 1.22460 1.31325 1.22130 0.99676 0.80995 0.95363 1.22117 1.05132 0.91736 0.98144 1.23104 0.91923 1.02774 1.03630 1.22993 0.97840 0.96811 1.03367 1.20906 1.04057 0.99495 0.92778 1.20555 1.07355 0.93396 0.98035 0.94758 0.92605 0.93673 0.92292 0.77048 0.85922 0.86040 0.92106 0.92350 0.86737 0.88520 0.88549 0.88333 0.88543 0.86462 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 8.91 37.16 0.33 -3.24 16 2 C 0.24 5.54 1.85 -69.09 -0.13 5.41 16 3 H 0.04 0.87 5.55 -51.93 -0.29 0.58 16 4 C -0.53 -14.34 9.31 -34.45 -0.32 -14.67 16 5 H 0.08 2.30 7.98 -52.48 -0.42 1.88 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 8 Si 0.89 21.18 24.37 -169.99 -4.14 17.04 16 9 H -0.28 -6.41 6.87 56.52 0.39 -6.02 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 12 N -0.72 -14.47 5.25 -53.25 -0.28 -14.75 16 13 C 0.21 3.81 6.64 -83.70 -0.56 3.25 16 14 C -0.18 -2.83 9.89 -39.40 -0.39 -3.22 16 15 C -0.10 -1.49 9.98 -39.46 -0.39 -1.89 16 16 C 0.04 0.69 6.69 -39.24 -0.26 0.42 16 17 O -0.32 -4.63 10.14 -19.75 -0.20 -4.83 16 18 C 0.09 1.06 5.02 37.16 0.19 1.25 16 19 C -0.15 -1.43 6.05 -90.62 -0.55 -1.98 16 20 C -0.18 -1.41 10.18 -26.69 -0.27 -1.68 16 21 C -0.17 -1.28 10.25 -26.69 -0.27 -1.55 16 22 C -0.15 -2.42 9.03 -39.46 -0.36 -2.78 16 23 C -0.17 -3.06 8.85 -39.40 -0.35 -3.41 16 24 H 0.03 0.66 7.70 -51.93 -0.40 0.26 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 28 H 0.40 7.53 8.55 -40.82 -0.35 7.18 16 29 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 32 H 0.06 0.64 7.38 -51.93 -0.38 0.25 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.12 1.58 6.29 -52.49 -0.33 1.25 16 39 H 0.12 2.31 6.11 -52.49 -0.32 1.99 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -29.27 315.99 -8.13 -37.40 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.62 Total: 8.14 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -3.43 Total: -22.07 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.49 Total: -40.44 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.20 Total: -4.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.27 -8.13 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690118471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.280 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds