Wall clock time and date at job start Mon Mar 30 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46601 * 2 1 4 4 C 1.50692 * 109.47341 * 119.99961 * 2 1 3 5 5 H 1.08003 * 119.99922 * 120.00194 * 4 2 1 6 6 C 1.37872 * 120.00293 * 299.99751 * 4 2 1 7 7 N 1.31518 * 120.00342 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00011 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47154 * 89.99698 * 8 6 4 10 10 H 1.48498 * 109.47080 * 209.99756 * 8 6 4 11 11 H 1.48504 * 109.47081 * 329.99716 * 8 6 4 12 12 N 1.46496 * 109.46975 * 240.00526 * 2 1 3 13 13 C 1.39940 * 120.00354 * 84.99313 * 12 2 1 14 14 C 1.38861 * 120.01805 * 179.97438 * 13 12 2 15 15 C 1.38113 * 119.97987 * 179.97438 * 14 13 12 16 16 C 1.38704 * 120.01680 * 359.97438 * 15 14 13 17 17 O 1.36004 * 119.97592 * 180.02562 * 16 15 14 18 18 C 1.42905 * 116.99566 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47079 * 180.02562 * 18 17 16 20 20 C 1.52997 * 117.49591 * 243.74835 * 19 18 17 21 21 C 1.52999 * 117.49919 * 175.08788 * 19 18 17 22 22 C 1.38697 * 120.03774 * 0.27978 * 16 15 14 23 23 C 1.38111 * 120.02159 * 359.48438 * 22 16 15 24 24 H 1.08993 * 109.47324 * 59.99916 * 1 2 3 25 25 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46853 * 299.99474 * 1 2 3 27 27 H 0.97001 * 120.00193 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99906 * 264.99654 * 12 2 1 29 29 H 1.08001 * 120.01439 * 0.02562 * 14 13 12 30 30 H 1.07997 * 119.99386 * 180.02562 * 15 14 13 31 31 H 1.09004 * 109.47054 * 299.99757 * 18 17 16 32 32 H 1.09000 * 109.47187 * 59.99813 * 18 17 16 33 33 H 1.09006 * 115.54840 * 29.41375 * 19 18 17 34 34 H 1.08998 * 117.50225 * 359.97438 * 20 19 18 35 35 H 1.09002 * 117.50050 * 145.02213 * 20 19 18 36 36 H 1.08998 * 117.49742 * 214.97977 * 21 19 18 37 37 H 1.09000 * 117.49487 * 359.97438 * 21 19 18 38 38 H 1.07998 * 119.98783 * 179.72181 * 22 16 15 39 39 H 1.07999 * 120.00964 * 180.25449 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4826 7 7 2.1383 -0.8590 3.5565 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9762 1.9950 3.9068 11 1 0.8472 2.1765 1.4921 12 7 2.0183 -0.6905 -1.1962 13 6 2.1518 0.0076 -2.4017 14 6 2.6151 -0.6464 -3.5356 15 6 2.7461 0.0432 -4.7250 16 6 2.4145 1.3886 -4.7872 17 8 2.5433 2.0667 -5.9590 18 6 2.1843 3.4499 -5.9509 19 6 2.3935 4.0394 -7.3472 20 6 3.4443 5.1410 -7.4987 21 6 1.9552 5.4873 -7.5757 22 6 1.9567 2.0439 -3.6538 23 6 1.8205 1.3546 -2.4647 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9037 -0.5278 4.4375 28 1 2.2490 -1.6317 -1.1527 29 1 2.8722 -1.6943 -3.4877 30 1 3.1060 -0.4654 -5.6071 31 1 1.1367 3.5517 -5.6671 32 1 2.8084 3.9831 -5.2337 33 1 2.2738 3.3406 -8.1752 34 1 3.9863 5.4462 -6.6036 35 1 4.0157 5.1674 -8.4266 36 1 1.5476 5.7413 -8.5542 37 1 1.5175 6.0198 -6.7313 38 1 1.7030 3.0925 -3.7020 39 1 1.4600 1.8641 -1.5833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690118471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:25 Heat of formation + Delta-G solvation = -0.260408 kcal Electronic energy + Delta-G solvation = -18774.248220 eV Core-core repulsion = 15875.300779 eV Total energy + Delta-G solvation = -2898.947442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01360 -39.34592 -37.88961 -36.66821 -34.41954 -32.15576 -31.74939 -29.15567 -27.80364 -27.04165 -24.18172 -23.28163 -23.01112 -21.69514 -21.36212 -19.32653 -18.96271 -17.68008 -17.29250 -16.91140 -16.55076 -15.93038 -15.70217 -15.23419 -15.04370 -14.66387 -14.41667 -14.25164 -14.07420 -13.88879 -13.46198 -13.34596 -13.06565 -12.64818 -12.48685 -12.35185 -12.23802 -12.09349 -11.64202 -11.43221 -11.35280 -11.22025 -10.96743 -10.82992 -10.27657 -9.86383 -8.36978 -7.86963 -6.43234 0.47561 0.81133 1.29715 1.34692 1.44807 2.26812 2.28351 2.82594 2.91002 2.97081 3.02482 3.79339 3.93490 3.99087 4.02676 4.10367 4.27247 4.36705 4.45455 4.50798 4.55419 4.60051 4.66162 4.71325 4.78459 4.80641 4.94672 5.01225 5.11431 5.19183 5.24343 5.30535 5.39925 5.45685 5.55247 5.56203 5.79829 6.06301 6.56664 6.60819 6.75970 7.11253 7.27432 8.79514 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030559 B = 0.003881 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.028921 B = 7212.007601 C = 7816.296072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.251 3.749 3 H 0.031 0.969 4 C -0.535 4.535 5 H 0.042 0.958 6 C 0.020 3.980 7 N -0.942 5.942 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.295 1.295 11 H -0.247 1.247 12 N -0.730 5.730 13 C 0.182 3.818 14 C -0.170 4.170 15 C -0.101 4.101 16 C 0.048 3.952 17 O -0.329 6.329 18 C 0.088 3.912 19 C -0.170 4.170 20 C -0.178 4.178 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.184 4.184 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.269 0.731 28 H 0.396 0.604 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.139 0.861 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 11.097 -21.254 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.145 3.855 3 H 0.048 0.952 4 C -0.573 4.573 5 H 0.061 0.939 6 C -0.179 4.179 7 N -0.581 5.581 8 Si 0.775 3.225 9 H -0.189 1.189 10 H -0.223 1.223 11 H -0.171 1.171 12 N -0.357 5.357 13 C 0.077 3.923 14 C -0.193 4.193 15 C -0.120 4.120 16 C 0.002 3.998 17 O -0.244 6.244 18 C 0.013 3.987 19 C -0.188 4.188 20 C -0.215 4.215 21 C -0.196 4.196 22 C -0.173 4.173 23 C -0.207 4.207 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.230 0.770 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.157 0.843 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.714 11.141 -21.083 23.907 hybrid contribution -0.269 -0.020 1.074 1.107 sum -1.983 11.121 -20.009 22.977 Atomic orbital electron populations 1.22462 0.98433 1.01409 0.99624 1.18718 0.90615 0.93097 0.83029 0.95177 1.21350 1.31983 1.13412 0.90592 0.93934 1.25732 0.97064 0.99995 0.95125 1.70017 1.47044 1.42335 0.98735 0.85859 0.79220 0.79773 0.77633 1.18865 1.22290 1.17092 1.44890 1.72042 1.12171 1.06641 1.18176 0.95257 0.92001 0.86821 1.20575 1.06866 1.00774 0.91082 1.20305 1.01926 0.91468 0.98301 1.18755 1.03243 0.92557 0.85268 1.85976 1.83704 1.24101 1.30605 1.22366 1.00084 0.79418 0.96862 1.22093 1.07223 0.92611 0.96887 1.23196 0.92414 1.01778 1.04127 1.23104 0.97321 0.94823 1.04387 1.21086 1.03634 1.00534 0.92051 1.20611 1.08139 0.93424 0.98567 0.92513 0.92825 0.94116 0.92169 0.76963 0.84246 0.83818 0.91494 0.91983 0.87065 0.88566 0.87604 0.86931 0.87895 0.84304 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.66 8.91 71.98 0.64 -6.01 16 2 C 0.25 11.43 1.85 44.24 0.08 11.51 16 3 H 0.03 1.43 5.55 -2.38 -0.01 1.41 16 4 C -0.54 -29.61 9.31 25.60 0.24 -29.37 16 5 H 0.04 2.59 7.98 -2.91 -0.02 2.57 16 6 C 0.02 1.10 5.45 84.65 0.46 1.56 16 7 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 8 Si 0.95 43.32 24.37 68.60 1.67 45.00 16 9 H -0.26 -11.37 6.87 99.48 0.68 -10.69 16 10 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.25 -10.42 6.53 99.48 0.65 -9.77 16 12 N -0.73 -29.28 5.25 -322.37 -1.69 -30.98 16 13 C 0.18 6.52 6.64 38.14 0.25 6.77 16 14 C -0.17 -5.20 9.89 22.39 0.22 -4.98 16 15 C -0.10 -2.86 9.98 22.35 0.22 -2.64 16 16 C 0.05 1.39 6.69 22.49 0.15 1.54 16 17 O -0.33 -8.72 10.14 -93.59 -0.95 -9.67 16 18 C 0.09 1.77 5.02 71.98 0.36 2.14 16 19 C -0.17 -2.79 6.05 -10.79 -0.07 -2.85 16 20 C -0.18 -2.41 10.18 30.62 0.31 -2.10 16 21 C -0.16 -1.90 10.25 30.62 0.31 -1.58 16 22 C -0.15 -4.55 9.03 22.35 0.20 -4.35 16 23 C -0.18 -6.37 8.85 22.39 0.20 -6.17 16 24 H 0.06 2.07 7.70 -2.39 -0.02 2.05 16 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 1.70 3.27 -2.39 -0.01 1.70 16 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.40 15.35 8.55 -92.70 -0.79 14.56 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.07 1.26 7.67 -2.38 -0.02 1.25 16 32 H 0.06 1.20 7.38 -2.39 -0.02 1.19 16 33 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.10 1.30 8.03 -2.39 -0.02 1.29 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.14 3.39 6.29 -2.91 -0.02 3.37 16 39 H 0.12 4.14 6.11 -2.91 -0.02 4.13 16 Total: -1.00 -63.16 315.99 3.10 -60.06 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.18 Total: 29.24 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 3.59 Total: -36.53 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -1.39 Total: -88.09 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.95 Total: -9.67 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.67 Total: 45.00 kcal Total: -63.16 3.10 -60.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690118471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.795 kcal (2) G-P(sol) polarization free energy of solvation -63.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds