Wall clock time and date at job start Mon Mar 30 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 C 1.50703 * 109.46626 * 240.00111 * 2 1 3 5 5 H 1.08003 * 120.00233 * 274.99907 * 4 2 1 6 6 C 1.37878 * 119.99744 * 95.00677 * 4 2 1 7 7 N 1.31516 * 119.99883 * 184.91220 * 6 4 2 8 8 Si 1.86802 * 120.00025 * 4.91016 * 6 4 2 9 9 H 1.48504 * 109.46907 * 84.83551 * 8 6 4 10 10 H 1.48502 * 109.47032 * 204.83188 * 8 6 4 11 11 H 1.48496 * 109.47306 * 324.83723 * 8 6 4 12 12 N 1.46501 * 109.47037 * 120.00681 * 2 1 3 13 13 C 1.39666 * 119.99825 * 274.99841 * 12 2 1 14 14 C 1.38982 * 120.04410 * 0.02562 * 13 12 2 15 15 C 1.38112 * 120.03196 * 180.02562 * 14 13 12 16 16 C 1.38214 * 120.13245 * 359.97438 * 15 14 13 17 17 C 1.38782 * 120.09266 * 359.97438 * 16 15 14 18 18 O 1.35897 * 120.01858 * 179.97438 * 17 16 15 19 19 C 1.42899 * 117.00064 * 0.02562 * 18 17 16 20 20 C 1.53003 * 109.46981 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.50079 * 243.62191 * 20 19 18 22 22 C 1.52996 * 60.00264 * 252.51534 * 21 20 19 23 23 C 1.38612 * 119.95990 * 0.02562 * 17 16 15 24 24 H 1.09000 * 109.47161 * 175.01908 * 1 2 3 25 25 H 1.09002 * 109.47072 * 295.02311 * 1 2 3 26 26 H 1.09000 * 109.46812 * 55.02287 * 1 2 3 27 27 H 0.97003 * 120.00137 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99884 * 94.99417 * 12 2 1 29 29 H 1.07997 * 119.97989 * 359.73991 * 14 13 12 30 30 H 1.08000 * 119.93333 * 180.02562 * 15 14 13 31 31 H 1.07998 * 119.95599 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47439 * 299.99964 * 19 18 17 33 33 H 1.08998 * 109.46614 * 59.99949 * 19 18 17 34 34 H 1.08999 * 115.54843 * 29.33838 * 20 19 18 35 35 H 1.08999 * 117.49773 * 0.02562 * 21 20 19 36 36 H 1.08996 * 117.49572 * 145.02251 * 21 20 19 37 37 H 1.09000 * 117.49774 * 252.51703 * 22 21 20 38 38 H 1.08996 * 117.50193 * 107.48972 * 22 21 20 39 39 H 1.08001 * 120.06571 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3173 9 1 3.5993 2.3948 -1.7820 10 1 2.1059 2.3993 -3.6927 11 1 1.1988 2.3276 -1.4448 12 7 2.0184 -0.6908 1.1961 13 6 2.1518 0.0059 2.3992 14 6 1.8210 1.3543 2.4629 15 6 1.9535 2.0430 3.6527 16 6 2.4145 1.3940 4.7825 17 6 2.7453 0.0474 4.7252 18 8 3.1989 -0.5892 5.8369 19 6 3.3099 0.1890 7.0303 20 6 3.8322 -0.6920 8.1669 21 6 2.9084 -0.9210 9.3649 22 6 4.1326 -0.0141 9.5052 23 6 2.6138 -0.6476 3.5332 24 1 -0.3633 -1.0238 -0.0892 25 1 -0.3633 0.4347 0.9312 26 1 -0.3633 0.5891 -0.8421 27 1 2.9370 -0.1047 -4.2555 28 1 2.2490 -1.6319 1.1524 29 1 1.4646 1.8648 1.5805 30 1 1.6956 3.0907 3.7005 31 1 2.5174 1.9355 5.7113 32 1 4.0017 1.0145 6.8627 33 1 2.3303 0.5846 7.2984 34 1 4.4779 -1.5162 7.8641 35 1 1.9284 -0.4443 9.3431 36 1 2.9462 -1.8962 9.8503 37 1 4.9758 -0.3927 10.0830 38 1 3.9582 1.0595 9.5760 39 1 2.8703 -1.6957 3.4867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690151684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:27 Heat of formation + Delta-G solvation = 6.956512 kcal Electronic energy + Delta-G solvation = -18765.869780 eV Core-core repulsion = 15867.235287 eV Total energy + Delta-G solvation = -2898.634493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.87501 -38.20130 -36.96889 -35.16006 -32.58289 -30.85136 -29.68556 -27.68172 -27.12801 -25.29493 -22.71792 -22.40082 -21.92818 -20.61694 -19.87536 -18.06917 -17.05646 -16.47856 -15.77103 -15.49675 -15.29431 -14.95461 -14.64179 -14.02579 -13.65517 -13.12501 -13.00759 -12.68510 -12.56710 -12.37262 -12.01262 -11.82097 -11.65382 -11.40914 -11.10212 -10.99300 -10.83265 -10.76748 -10.56559 -10.42007 -10.15371 -9.91811 -9.35533 -9.23046 -8.70853 -7.91825 -6.70232 -6.26024 -4.29297 1.92546 2.11689 3.11043 3.19831 3.27532 3.28719 3.55682 4.26072 4.32947 4.35081 4.50741 4.57544 4.75854 4.99704 5.12540 5.14796 5.29916 5.33638 5.36648 5.50310 5.56345 5.75540 5.77602 5.81788 5.95507 6.00056 6.18327 6.36658 6.46534 6.61220 6.71682 6.74612 6.86565 7.00296 7.07529 7.22159 7.43814 7.75748 8.01601 8.40614 8.63436 8.78765 9.34902 10.86359 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041589 B = 0.003683 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.090105 B = 7601.653367 C = 7799.409892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.235 3.765 3 H 0.042 0.958 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.262 1.262 12 N -0.714 5.714 13 C 0.269 3.731 14 C -0.239 4.239 15 C -0.035 4.035 16 C -0.289 4.289 17 C 0.172 3.828 18 O -0.317 6.317 19 C 0.094 3.906 20 C -0.155 4.155 21 C -0.177 4.177 22 C -0.172 4.172 23 C -0.248 4.248 24 H 0.049 0.951 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.268 0.732 28 H 0.395 0.605 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 3.663 21.105 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.132 3.868 3 H 0.059 0.941 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.336 5.336 13 C 0.159 3.841 14 C -0.262 4.262 15 C -0.054 4.054 16 C -0.310 4.310 17 C 0.127 3.873 18 O -0.231 6.231 19 C 0.019 3.981 20 C -0.173 4.173 21 C -0.214 4.214 22 C -0.209 4.209 23 C -0.272 4.272 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.229 0.771 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.111 3.575 20.686 20.993 hybrid contribution 0.100 0.819 -0.120 0.834 sum 0.211 4.394 20.566 21.031 Atomic orbital electron populations 1.22338 0.98929 1.01023 0.98998 1.19130 0.90613 0.93714 0.83324 0.94067 1.21006 1.45024 0.95763 0.94864 0.90379 1.24963 0.93768 0.98611 0.95163 1.69882 1.44782 1.36170 1.01713 0.86898 0.79470 0.85915 0.77578 1.19736 1.21091 1.18711 1.45723 1.68682 1.12439 1.06787 1.17713 0.89195 0.91170 0.86064 1.20650 1.12879 0.93695 0.99004 1.20548 0.94654 0.98478 0.91732 1.20711 1.16115 0.94234 0.99981 1.18523 0.92582 0.90659 0.85559 1.85986 1.81037 1.39037 1.16998 1.22188 1.00238 0.93050 0.82643 1.22134 1.03969 1.02718 0.88484 1.23092 0.95209 1.01422 1.01678 1.22979 1.00101 0.99155 0.98669 1.19612 1.16454 1.00629 0.90485 0.93186 0.95185 0.93009 0.92216 0.77066 0.86092 0.86694 0.86867 0.91750 0.92078 0.86612 0.88542 0.88497 0.88282 0.88559 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.41 37.16 0.35 -2.88 16 2 C 0.24 5.38 1.91 -69.08 -0.13 5.25 16 3 H 0.04 0.97 3.63 -51.93 -0.19 0.78 16 4 C -0.53 -14.18 9.05 -34.44 -0.31 -14.49 16 5 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 8 Si 0.87 20.74 26.99 -169.99 -4.59 16.15 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.26 -5.88 6.82 56.52 0.39 -5.50 16 12 N -0.71 -14.74 5.24 -53.30 -0.28 -15.02 16 13 C 0.27 5.19 6.63 -83.81 -0.56 4.63 16 14 C -0.24 -4.41 8.85 -39.35 -0.35 -4.76 16 15 C -0.04 -0.56 10.03 -39.64 -0.40 -0.95 16 16 C -0.29 -4.40 9.04 -39.39 -0.36 -4.76 16 17 C 0.17 2.85 6.68 -39.24 -0.26 2.58 16 18 O -0.32 -4.75 10.13 -19.42 -0.20 -4.95 16 19 C 0.09 1.05 5.02 37.16 0.19 1.24 16 20 C -0.15 -1.45 6.06 -90.62 -0.55 -2.00 16 21 C -0.18 -1.38 10.18 -26.73 -0.27 -1.65 16 22 C -0.17 -1.23 10.25 -26.73 -0.27 -1.50 16 23 C -0.25 -4.42 9.83 -39.24 -0.39 -4.81 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.57 7.81 -51.93 -0.41 0.16 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.39 7.79 8.60 -40.82 -0.35 7.43 16 29 H 0.12 2.30 6.20 -52.49 -0.33 1.97 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.43 6.29 -52.49 -0.33 1.10 16 32 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 33 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 34 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -29.13 322.72 -8.59 -37.72 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.76 Total: 8.65 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -3.41 Total: -22.01 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.49 Total: -40.41 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.59 Total: 16.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.13 -8.59 -37.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690151684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.674 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds