Wall clock time and date at job start Mon Mar 30 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 C 1.50703 * 109.46626 * 240.00111 * 2 1 3 5 5 H 1.08003 * 120.00233 * 274.99907 * 4 2 1 6 6 C 1.37878 * 119.99744 * 95.00677 * 4 2 1 7 7 N 1.31516 * 119.99883 * 184.91220 * 6 4 2 8 8 Si 1.86802 * 120.00025 * 4.91016 * 6 4 2 9 9 H 1.48504 * 109.46907 * 84.83551 * 8 6 4 10 10 H 1.48502 * 109.47032 * 204.83188 * 8 6 4 11 11 H 1.48496 * 109.47306 * 324.83723 * 8 6 4 12 12 N 1.46501 * 109.47037 * 120.00681 * 2 1 3 13 13 C 1.39666 * 119.99825 * 274.99841 * 12 2 1 14 14 C 1.38982 * 120.04410 * 0.02562 * 13 12 2 15 15 C 1.38112 * 120.03196 * 180.02562 * 14 13 12 16 16 C 1.38214 * 120.13245 * 359.97438 * 15 14 13 17 17 C 1.38782 * 120.09266 * 359.97438 * 16 15 14 18 18 O 1.35897 * 120.01858 * 179.97438 * 17 16 15 19 19 C 1.42899 * 117.00064 * 0.02562 * 18 17 16 20 20 C 1.53003 * 109.46981 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.50079 * 243.62191 * 20 19 18 22 22 C 1.52996 * 60.00264 * 252.51534 * 21 20 19 23 23 C 1.38612 * 119.95990 * 0.02562 * 17 16 15 24 24 H 1.09000 * 109.47161 * 175.01908 * 1 2 3 25 25 H 1.09002 * 109.47072 * 295.02311 * 1 2 3 26 26 H 1.09000 * 109.46812 * 55.02287 * 1 2 3 27 27 H 0.97003 * 120.00137 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99884 * 94.99417 * 12 2 1 29 29 H 1.07997 * 119.97989 * 359.73991 * 14 13 12 30 30 H 1.08000 * 119.93333 * 180.02562 * 15 14 13 31 31 H 1.07998 * 119.95599 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47439 * 299.99964 * 19 18 17 33 33 H 1.08998 * 109.46614 * 59.99949 * 19 18 17 34 34 H 1.08999 * 115.54843 * 29.33838 * 20 19 18 35 35 H 1.08999 * 117.49773 * 0.02562 * 21 20 19 36 36 H 1.08996 * 117.49572 * 145.02251 * 21 20 19 37 37 H 1.09000 * 117.49774 * 252.51703 * 22 21 20 38 38 H 1.08996 * 117.50193 * 107.48972 * 22 21 20 39 39 H 1.08001 * 120.06571 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3173 9 1 3.5993 2.3948 -1.7820 10 1 2.1059 2.3993 -3.6927 11 1 1.1988 2.3276 -1.4448 12 7 2.0184 -0.6908 1.1961 13 6 2.1518 0.0059 2.3992 14 6 1.8210 1.3543 2.4629 15 6 1.9535 2.0430 3.6527 16 6 2.4145 1.3940 4.7825 17 6 2.7453 0.0474 4.7252 18 8 3.1989 -0.5892 5.8369 19 6 3.3099 0.1890 7.0303 20 6 3.8322 -0.6920 8.1669 21 6 2.9084 -0.9210 9.3649 22 6 4.1326 -0.0141 9.5052 23 6 2.6138 -0.6476 3.5332 24 1 -0.3633 -1.0238 -0.0892 25 1 -0.3633 0.4347 0.9312 26 1 -0.3633 0.5891 -0.8421 27 1 2.9370 -0.1047 -4.2555 28 1 2.2490 -1.6319 1.1524 29 1 1.4646 1.8648 1.5805 30 1 1.6956 3.0907 3.7005 31 1 2.5174 1.9355 5.7113 32 1 4.0017 1.0145 6.8627 33 1 2.3303 0.5846 7.2984 34 1 4.4779 -1.5162 7.8641 35 1 1.9284 -0.4443 9.3431 36 1 2.9462 -1.8962 9.8503 37 1 4.9758 -0.3927 10.0830 38 1 3.9582 1.0595 9.5760 39 1 2.8703 -1.6957 3.4867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690151684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:27 Heat of formation + Delta-G solvation = -9.507643 kcal Electronic energy + Delta-G solvation = -18766.583719 eV Core-core repulsion = 15867.235287 eV Total energy + Delta-G solvation = -2899.348432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07360 -39.38138 -37.88750 -36.66423 -34.50441 -32.42650 -31.01752 -29.01594 -28.18523 -27.27623 -23.73376 -23.33137 -23.22507 -21.62030 -21.31150 -19.64161 -18.70009 -17.56154 -17.11942 -16.77604 -16.48828 -16.35193 -15.86678 -15.30980 -14.92153 -14.59888 -14.41619 -14.35933 -14.01992 -13.82041 -13.34861 -13.02446 -12.85083 -12.63739 -12.49602 -12.41249 -12.21529 -12.03683 -11.84244 -11.71139 -11.37924 -11.20169 -10.94261 -10.84690 -10.66264 -9.20567 -8.38010 -8.18672 -6.45879 0.61562 0.79132 1.33053 1.34913 1.44356 2.10758 2.28358 2.74919 2.91134 3.01970 3.13531 3.79269 3.92745 4.03999 4.06398 4.22065 4.31371 4.36102 4.39209 4.48608 4.58674 4.63730 4.72052 4.78453 4.79568 4.85360 4.97298 5.01178 5.11845 5.21474 5.24595 5.40313 5.45181 5.50422 5.54847 5.69581 5.77667 6.07653 6.57380 6.59138 6.71009 7.06106 7.23652 8.78136 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041589 B = 0.003683 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.090105 B = 7601.653367 C = 7799.409892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.244 3.756 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.040 0.960 6 C 0.022 3.978 7 N -0.939 5.939 8 Si 0.936 3.064 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.238 1.238 12 N -0.727 5.727 13 C 0.250 3.750 14 C -0.259 4.259 15 C -0.029 4.029 16 C -0.278 4.278 17 C 0.169 3.831 18 O -0.331 6.331 19 C 0.088 3.912 20 C -0.177 4.177 21 C -0.177 4.177 22 C -0.155 4.155 23 C -0.261 4.261 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.270 0.730 28 H 0.394 0.606 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 6.233 24.076 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.140 3.860 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.058 0.942 6 C -0.177 4.177 7 N -0.577 5.577 8 Si 0.759 3.241 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.161 1.161 12 N -0.350 5.350 13 C 0.142 3.858 14 C -0.282 4.282 15 C -0.048 4.048 16 C -0.299 4.299 17 C 0.123 3.877 18 O -0.245 6.245 19 C 0.013 3.987 20 C -0.195 4.195 21 C -0.214 4.214 22 C -0.192 4.192 23 C -0.285 4.285 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.228 0.772 29 H 0.133 0.867 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.263 6.150 23.718 24.504 hybrid contribution 0.264 -0.069 -0.839 0.882 sum 0.001 6.081 22.880 23.674 Atomic orbital electron populations 1.22225 0.97441 1.00950 1.00023 1.18895 0.91595 0.93072 0.82460 0.94116 1.21257 1.44597 0.94377 0.96827 0.94193 1.25827 0.93521 1.03744 0.94626 1.70023 1.46826 1.38238 1.02651 0.85908 0.80279 0.79748 0.78133 1.19454 1.20690 1.16138 1.45409 1.70275 1.12396 1.06955 1.17860 0.90528 0.91779 0.85675 1.20781 1.13939 0.93407 1.00037 1.20922 0.93222 0.99963 0.90651 1.21096 1.14002 0.93635 1.01123 1.18638 0.92147 0.91266 0.85636 1.85988 1.80617 1.40224 1.17667 1.22479 1.01225 0.93436 0.81514 1.22109 1.05280 1.03213 0.88893 1.23193 0.95625 1.02148 1.00448 1.23097 0.99991 0.99754 0.96348 1.19700 1.16884 1.00853 0.91082 0.93716 0.93128 0.93009 0.92094 0.77248 0.86737 0.83299 0.83634 0.90810 0.90918 0.87692 0.88098 0.87916 0.87149 0.87353 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 9.41 71.98 0.68 -5.40 16 2 C 0.24 11.17 1.91 44.25 0.08 11.26 16 3 H 0.04 1.88 3.63 -2.39 -0.01 1.87 16 4 C -0.53 -29.48 9.05 25.60 0.23 -29.25 16 5 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 6 C 0.02 1.25 5.47 84.65 0.46 1.72 16 7 N -0.94 -57.07 13.96 21.45 0.30 -56.77 16 8 Si 0.94 42.58 26.99 68.60 1.85 44.43 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.24 -9.81 6.82 99.48 0.68 -9.13 16 12 N -0.73 -30.45 5.24 -322.54 -1.69 -32.14 16 13 C 0.25 9.49 6.63 38.20 0.25 9.74 16 14 C -0.26 -9.04 8.85 22.42 0.20 -8.84 16 15 C -0.03 -0.81 10.03 22.23 0.22 -0.59 16 16 C -0.28 -7.46 9.04 22.39 0.20 -7.26 16 17 C 0.17 5.27 6.68 22.49 0.15 5.42 16 18 O -0.33 -9.39 10.13 -92.39 -0.94 -10.33 16 19 C 0.09 1.73 5.02 71.98 0.36 2.09 16 20 C -0.18 -2.95 6.06 -10.79 -0.07 -3.01 16 21 C -0.18 -2.33 10.18 30.59 0.31 -2.02 16 22 C -0.16 -1.75 10.25 30.59 0.31 -1.43 16 23 C -0.26 -9.23 9.83 22.49 0.22 -9.01 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.86 7.81 -2.39 -0.02 1.84 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.39 16.25 8.60 -92.71 -0.80 15.45 16 29 H 0.11 4.11 6.20 -2.91 -0.02 4.09 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.15 2.94 6.29 -2.91 -0.02 2.92 16 32 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 33 H 0.07 1.25 7.39 -2.39 -0.02 1.24 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 1.23 8.03 -2.39 -0.02 1.21 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -64.00 322.72 3.37 -60.63 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.22 Total: 30.76 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 3.63 Total: -36.58 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -1.39 Total: -88.91 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.94 Total: -10.33 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.85 Total: 44.43 kcal Total: -64.00 3.37 -60.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690151684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.123 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds