Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46497 * 109.47133 * 239.99872 * 2 1 3 13 13 C 1.39668 * 119.99895 * 84.99965 * 12 2 1 14 14 C 1.38978 * 120.04381 * 359.72560 * 13 12 2 15 15 C 1.38116 * 120.03195 * 179.76889 * 14 13 12 16 16 C 1.38216 * 120.13020 * 0.50205 * 15 14 13 17 17 C 1.38779 * 120.09202 * 359.75126 * 16 15 14 18 18 O 1.35896 * 120.01680 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00445 * 0.02562 * 18 17 16 20 20 C 1.52994 * 109.47432 * 179.97438 * 19 18 17 21 21 C 1.53001 * 117.50478 * 243.62552 * 20 19 18 22 22 C 1.53001 * 117.50128 * 174.99949 * 20 19 18 23 23 C 1.38619 * 119.96208 * 359.97438 * 17 16 15 24 24 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 25 25 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 26 26 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00203 * 264.99839 * 12 2 1 29 29 H 1.07995 * 119.98510 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.93419 * 180.23177 * 15 14 13 31 31 H 1.08004 * 119.95901 * 179.72364 * 16 15 14 32 32 H 1.08991 * 109.47237 * 300.00341 * 19 18 17 33 33 H 1.09011 * 109.46825 * 59.99689 * 19 18 17 34 34 H 1.09007 * 115.54600 * 29.33390 * 20 19 18 35 35 H 1.09000 * 117.49236 * 359.97438 * 21 20 19 36 36 H 1.08992 * 117.50129 * 145.01869 * 21 20 19 37 37 H 1.08999 * 117.50005 * 214.98486 * 22 20 19 38 38 H 1.09000 * 117.49728 * 0.02562 * 22 20 19 39 39 H 1.07995 * 120.06153 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1517 0.0061 -2.3992 14 6 1.8160 1.3532 -2.4641 15 6 1.9525 2.0431 -3.6528 16 6 2.4131 1.3941 -4.7828 17 6 2.7449 0.0477 -4.7253 18 8 3.1971 -0.5891 -5.8374 19 6 3.3067 0.1888 -7.0311 20 6 3.8288 -0.6922 -8.1678 21 6 5.1881 -0.3342 -8.7720 22 6 3.9057 -0.0717 -9.5642 23 6 2.6147 -0.6471 -3.5329 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7129 1.1642 3.4844 28 1 2.2491 -1.6318 -1.1526 29 1 1.4522 1.8618 -1.5836 30 1 1.6948 3.0908 -3.7004 31 1 2.5146 1.9352 -5.7120 32 1 2.3270 0.5845 -7.2982 33 1 3.9988 1.0144 -6.8644 34 1 3.5703 -1.7490 -8.1002 35 1 5.7102 0.5293 -8.3599 36 1 5.8242 -1.1554 -9.1019 37 1 3.6982 -0.7204 -10.4153 38 1 3.5848 0.9643 -9.6730 39 1 2.8728 -1.6947 -3.4862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690151686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = -8.021552 kcal Electronic energy + Delta-G solvation = -18671.701496 eV Core-core repulsion = 15772.417506 eV Total energy + Delta-G solvation = -2899.283990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05550 -39.33689 -37.86330 -36.66333 -34.49599 -32.01137 -30.79335 -28.92989 -28.14076 -27.26053 -23.72088 -23.39676 -23.23999 -21.73302 -21.31824 -19.28171 -18.51544 -17.46589 -17.01313 -16.77434 -16.45902 -16.43230 -15.90153 -15.32464 -14.79601 -14.45012 -14.37118 -14.31368 -13.82288 -13.55163 -13.09021 -12.98158 -12.85196 -12.52437 -12.42908 -12.37363 -12.23171 -12.15524 -11.93891 -11.70008 -11.37162 -11.10707 -10.90279 -10.75901 -10.49084 -9.19278 -8.23843 -8.11792 -6.34637 0.62738 0.80979 1.42059 1.42713 1.52982 2.11705 2.38003 2.86722 3.01135 3.03396 3.11669 3.80171 3.93216 4.04866 4.07209 4.22700 4.36038 4.38561 4.46688 4.59825 4.66558 4.70997 4.74628 4.79077 4.98178 5.01334 5.02452 5.12213 5.22265 5.25160 5.40467 5.46470 5.50887 5.60938 5.72962 5.79003 5.92143 6.09806 6.53637 6.60323 6.83059 7.17158 7.37640 8.86091 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.044880 B = 0.003372 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.743074 B = 8301.214886 C = 8649.059836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.277 3.723 3 H 0.013 0.987 4 C -0.550 4.550 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.966 3.034 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.268 1.268 12 N -0.728 5.728 13 C 0.250 3.750 14 C -0.256 4.256 15 C -0.031 4.031 16 C -0.278 4.278 17 C 0.169 3.831 18 O -0.329 6.329 19 C 0.087 3.913 20 C -0.176 4.176 21 C -0.178 4.178 22 C -0.155 4.155 23 C -0.260 4.260 24 H 0.068 0.932 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.394 0.606 29 H 0.107 0.893 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 0.500 -20.248 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.174 3.826 3 H 0.031 0.969 4 C -0.588 4.588 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.791 3.209 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.351 5.351 13 C 0.142 3.858 14 C -0.279 4.279 15 C -0.050 4.050 16 C -0.299 4.299 17 C 0.123 3.877 18 O -0.243 6.243 19 C 0.013 3.987 20 C -0.194 4.194 21 C -0.215 4.215 22 C -0.191 4.191 23 C -0.284 4.284 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.228 0.772 29 H 0.125 0.875 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.313 0.524 -19.938 20.406 hybrid contribution 0.163 -0.587 1.217 1.361 sum 4.477 -0.063 -18.722 19.249 Atomic orbital electron populations 1.22002 0.98612 0.99196 0.99994 1.18380 0.90735 0.92112 0.81420 0.96906 1.21547 1.32378 1.13473 0.91430 0.92173 1.25671 0.94893 0.95657 1.01869 1.69998 1.36997 1.23492 1.24616 0.85436 0.78018 0.78953 0.78497 1.20223 1.20552 1.19251 1.45319 1.70246 1.12235 1.07320 1.17844 0.90438 0.91643 0.85878 1.20766 1.13482 0.93781 0.99840 1.20894 0.93511 0.99853 0.90751 1.21070 1.14133 0.93773 1.00887 1.18608 0.92196 0.91174 0.85691 1.85980 1.80658 1.40104 1.17576 1.22481 1.01444 0.93364 0.81441 1.22109 1.02976 1.00525 0.93791 1.23196 0.90677 1.03966 1.03694 1.23100 1.00508 1.02741 0.92788 1.19680 1.16961 1.00864 0.90907 0.91347 0.95636 0.95314 0.92444 0.77233 0.87533 0.83695 0.83600 0.90742 0.91124 0.87518 0.88244 0.87847 0.87033 0.87420 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.85 9.19 71.98 0.66 -6.19 16 2 C 0.28 14.06 2.25 44.25 0.10 14.16 16 3 H 0.01 0.74 6.49 -2.39 -0.02 0.72 16 4 C -0.55 -29.76 8.73 25.60 0.22 -29.54 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 1.05 5.30 84.66 0.45 1.49 16 7 N -0.91 -51.17 11.33 21.45 0.24 -50.92 16 8 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.73 -32.13 5.24 -322.57 -1.69 -33.82 16 13 C 0.25 10.21 6.63 38.20 0.25 10.47 16 14 C -0.26 -10.04 8.83 22.42 0.20 -9.84 16 15 C -0.03 -0.99 10.03 22.24 0.22 -0.77 16 16 C -0.28 -8.07 9.04 22.39 0.20 -7.87 16 17 C 0.17 5.52 6.68 22.49 0.15 5.67 16 18 O -0.33 -9.60 10.13 -92.38 -0.94 -10.53 16 19 C 0.09 1.79 5.02 71.98 0.36 2.15 16 20 C -0.18 -3.01 6.06 -10.79 -0.07 -3.08 16 21 C -0.18 -2.45 10.18 30.60 0.31 -2.14 16 22 C -0.15 -1.81 10.25 30.60 0.31 -1.49 16 23 C -0.26 -9.56 9.83 22.49 0.22 -9.33 16 24 H 0.07 3.66 6.08 -2.39 -0.01 3.64 16 25 H 0.02 1.15 7.67 -2.39 -0.02 1.13 16 26 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.39 16.34 8.55 -92.71 -0.79 15.55 16 29 H 0.11 4.57 6.08 -2.91 -0.02 4.56 16 30 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 31 H 0.15 3.23 6.29 -2.91 -0.02 3.21 16 32 H 0.07 1.36 7.66 -2.39 -0.02 1.35 16 33 H 0.07 1.31 7.39 -2.38 -0.02 1.29 16 34 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.10 1.31 8.03 -2.39 -0.02 1.29 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -60.17 322.71 3.50 -56.67 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.25 Total: 30.26 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 3.60 Total: -36.31 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.45 Total: -84.74 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.94 Total: -10.53 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -60.17 3.50 -56.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690151686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.653 kcal (2) G-P(sol) polarization free energy of solvation -60.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds