Wall clock time and date at job start Mon Mar 30 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46865 * 2 1 4 4 C 1.53002 * 109.47016 * 119.99705 * 2 1 3 5 5 C 1.50700 * 109.47036 * 185.00047 * 4 2 1 6 6 H 1.07997 * 119.99685 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99756 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99810 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47101 * 90.00167 * 9 7 5 11 11 H 1.48502 * 109.47345 * 210.00106 * 9 7 5 12 12 H 1.48504 * 109.47320 * 330.00047 * 9 7 5 13 13 O 1.42898 * 109.47301 * 240.00120 * 2 1 3 14 14 C 1.35903 * 117.00104 * 84.81523 * 13 2 1 15 15 C 1.38752 * 120.08893 * 354.62965 * 14 13 2 16 16 C 1.38007 * 119.87343 * 180.02562 * 15 14 13 17 17 C 1.38541 * 120.29119 * 0.02562 * 16 15 14 18 18 C 1.38263 * 119.94098 * 0.02562 * 17 16 15 19 19 C 1.38411 * 119.90307 * 0.02562 * 18 17 16 20 20 C 1.51382 * 109.75517 * 180.02562 * 18 17 16 21 21 H 1.09005 * 110.30182 * 101.72775 * 20 18 17 22 22 N 1.46897 * 110.30120 * 223.87809 * 20 18 17 23 23 C 1.54335 * 105.17020 * 342.80323 * 20 18 17 24 24 C 1.51697 * 130.23968 * 179.84081 * 17 16 15 25 25 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47682 * 299.99721 * 1 2 3 27 27 H 1.09000 * 109.47455 * 60.00088 * 1 2 3 28 28 H 1.08995 * 109.47586 * 305.00425 * 4 2 1 29 29 H 1.09003 * 109.46823 * 65.00444 * 4 2 1 30 30 H 0.97008 * 120.00018 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.06146 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.85056 * 180.02562 * 16 15 14 33 33 H 1.07997 * 119.91833 * 180.02562 * 19 18 17 34 34 H 1.00907 * 111.00067 * 295.74622 * 22 20 18 35 35 H 1.00900 * 111.00053 * 59.70030 * 22 20 18 36 36 H 1.09002 * 110.82242 * 144.59302 * 23 20 18 37 37 H 1.09003 * 110.82437 * 267.94011 * 23 20 18 38 38 H 1.09006 * 110.25421 * 78.26540 * 24 17 16 39 39 H 1.08994 * 110.49572 * 316.01801 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0788 -0.0854 0.5396 7 6 4.2303 -1.1934 2.3579 8 7 3.5764 -1.8385 3.2990 9 14 6.0921 -1.0622 2.4362 10 1 6.4709 0.1600 3.1898 11 1 6.6442 -2.2579 3.1224 12 1 6.6413 -0.9845 1.0586 13 8 2.0064 -0.6736 -1.1668 14 6 2.1089 0.0617 -2.3051 15 6 1.6546 1.3725 -2.3298 16 6 1.7604 2.1150 -3.4883 17 6 2.3179 1.5571 -4.6273 18 6 2.7703 0.2508 -4.6055 19 6 2.6646 -0.4967 -3.4454 20 6 3.3314 -0.1191 -5.9619 21 1 4.4207 -0.0839 -5.9431 22 7 2.8704 -1.4569 -6.3565 23 6 2.7778 0.9459 -6.9321 24 6 2.5399 2.1554 -6.0035 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0608 -2.2453 4.0345 31 1 1.2183 1.8106 -1.4443 32 1 1.4071 3.1354 -3.5070 33 1 3.0183 -1.5170 -3.4279 34 1 3.2266 -2.1620 -5.7286 35 1 1.8633 -1.4924 -6.4060 36 1 3.5105 1.1867 -7.7023 37 1 1.8420 0.6123 -7.3808 38 1 3.4158 2.8043 -5.9961 39 1 1.6591 2.7113 -6.3247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690712815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:02 Heat of formation + Delta-G solvation = -30.144736 kcal Electronic energy + Delta-G solvation = -19354.681209 eV Core-core repulsion = 16454.437885 eV Total energy + Delta-G solvation = -2900.243323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34865 -38.59897 -35.38191 -33.52523 -32.59289 -31.55101 -30.10678 -28.08815 -27.43378 -25.57114 -23.37379 -22.69120 -21.40679 -20.62226 -19.42520 -17.49087 -16.42511 -16.25157 -15.78699 -15.16651 -14.83489 -14.80075 -14.42205 -14.32713 -13.46015 -13.03936 -13.01039 -12.69202 -12.33808 -12.19918 -11.96623 -11.66966 -11.56015 -11.40098 -11.30141 -11.19114 -10.86168 -10.73566 -10.63501 -10.30960 -10.00183 -9.40058 -9.13187 -8.99871 -8.57267 -8.41100 -7.62827 -6.04090 -4.05605 1.49263 1.69102 3.30812 3.37189 3.42232 3.77688 3.94610 4.38708 4.44218 4.52094 4.73504 5.00869 5.09429 5.16011 5.27600 5.33451 5.47871 5.54774 5.60647 5.63271 5.70983 5.76268 5.81173 5.88140 5.94902 6.06120 6.17837 6.28852 6.48720 6.52775 6.63153 6.72118 6.78129 6.99211 7.02725 7.31227 7.46767 7.56122 7.92327 8.12624 8.33798 8.97967 9.57969 11.07316 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004929 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.004258 B = 5678.914554 C = 6220.787936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.290 6.290 14 C 0.154 3.846 15 C -0.210 4.210 16 C -0.068 4.068 17 C -0.149 4.149 18 C -0.103 4.103 19 C -0.148 4.148 20 C 0.132 3.868 21 H 0.095 0.905 22 N -0.839 5.839 23 C -0.110 4.110 24 C -0.074 4.074 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.344 0.656 35 H 0.341 0.659 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 6.456 -16.845 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 O -0.203 6.203 14 C 0.106 3.894 15 C -0.229 4.229 16 C -0.086 4.086 17 C -0.150 4.150 18 C -0.105 4.105 19 C -0.167 4.167 20 C 0.021 3.979 21 H 0.112 0.888 22 N -0.367 5.367 23 C -0.148 4.148 24 C -0.112 4.112 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.029 6.250 -17.328 18.856 hybrid contribution 0.466 0.249 1.400 1.497 sum -3.563 6.499 -15.928 17.568 Atomic orbital electron populations 1.22416 0.97013 1.02612 1.01449 1.22878 0.91799 0.97122 0.85081 0.91981 1.19269 0.96617 0.96496 0.88736 1.21111 0.91670 1.34519 1.07970 0.92657 1.24969 0.98487 0.95182 0.95649 1.69948 1.35609 1.35913 1.12114 0.86584 0.85668 0.77542 0.78210 1.20649 1.21134 1.19841 1.86272 1.79811 1.38083 1.16111 1.19009 0.92675 0.90179 0.87514 1.21290 1.07322 0.94768 0.99542 1.20352 0.97827 0.98997 0.91458 1.20347 1.03561 0.95418 0.95664 1.21167 0.98675 0.94983 0.95659 1.19716 1.05286 1.01008 0.90650 1.21002 0.99556 0.89183 0.88172 0.88761 1.59014 1.15971 1.04608 1.57060 1.22317 1.01552 0.93905 0.96985 1.20982 1.01695 0.97466 0.91016 0.91919 0.91340 0.93323 0.94348 0.95286 0.92915 0.85021 0.86527 0.85935 0.84292 0.84615 0.90415 0.90754 0.90685 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.17 37.16 0.34 -2.67 16 2 C 0.09 1.80 2.17 -26.73 -0.06 1.75 16 3 H 0.06 1.26 6.32 -51.93 -0.33 0.94 16 4 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 5 C -0.51 -14.61 8.88 -34.44 -0.31 -14.92 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 O -0.29 -6.24 9.55 -19.43 -0.19 -6.43 16 14 C 0.15 2.84 6.60 -39.26 -0.26 2.58 16 15 C -0.21 -3.44 8.24 -39.48 -0.33 -3.76 16 16 C -0.07 -0.96 10.03 -39.55 -0.40 -1.36 16 17 C -0.15 -2.00 6.15 -104.01 -0.64 -2.64 16 18 C -0.10 -1.44 5.76 -104.21 -0.60 -2.04 16 19 C -0.15 -2.44 9.89 -39.38 -0.39 -2.83 16 20 C 0.13 1.50 4.01 -67.83 -0.27 1.22 16 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 22 N -0.84 -8.77 9.27 -4.77 -0.04 -8.81 16 23 C -0.11 -1.03 6.74 -25.34 -0.17 -1.20 16 24 C -0.07 -0.75 6.80 -26.70 -0.18 -0.93 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.73 6.90 -51.93 -0.36 0.38 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.13 2.05 5.44 -52.49 -0.29 1.77 16 32 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 33 H 0.12 1.96 8.05 -52.49 -0.42 1.53 16 34 H 0.34 3.51 9.01 -39.29 -0.35 3.16 16 35 H 0.34 3.36 8.88 -39.29 -0.35 3.01 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.67 7.98 -51.93 -0.41 0.26 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -30.59 319.35 -9.04 -39.64 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.86 Total: 4.57 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -3.48 Total: -24.69 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.69 Total: -34.82 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.19 Total: -6.43 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.59 -9.04 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690712815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.492 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds