Wall clock time and date at job start Mon Mar 30 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46865 * 2 1 4 4 C 1.53002 * 109.47016 * 119.99705 * 2 1 3 5 5 C 1.50700 * 109.47036 * 185.00047 * 4 2 1 6 6 H 1.07997 * 119.99685 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99756 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99810 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47101 * 90.00167 * 9 7 5 11 11 H 1.48502 * 109.47345 * 210.00106 * 9 7 5 12 12 H 1.48504 * 109.47320 * 330.00047 * 9 7 5 13 13 O 1.42898 * 109.47301 * 240.00120 * 2 1 3 14 14 C 1.35903 * 117.00104 * 84.81523 * 13 2 1 15 15 C 1.38752 * 120.08893 * 354.62965 * 14 13 2 16 16 C 1.38007 * 119.87343 * 180.02562 * 15 14 13 17 17 C 1.38541 * 120.29119 * 0.02562 * 16 15 14 18 18 C 1.38263 * 119.94098 * 0.02562 * 17 16 15 19 19 C 1.38411 * 119.90307 * 0.02562 * 18 17 16 20 20 C 1.51382 * 109.75517 * 180.02562 * 18 17 16 21 21 H 1.09005 * 110.30182 * 101.72775 * 20 18 17 22 22 N 1.46897 * 110.30120 * 223.87809 * 20 18 17 23 23 C 1.54335 * 105.17020 * 342.80323 * 20 18 17 24 24 C 1.51697 * 130.23968 * 179.84081 * 17 16 15 25 25 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47682 * 299.99721 * 1 2 3 27 27 H 1.09000 * 109.47455 * 60.00088 * 1 2 3 28 28 H 1.08995 * 109.47586 * 305.00425 * 4 2 1 29 29 H 1.09003 * 109.46823 * 65.00444 * 4 2 1 30 30 H 0.97008 * 120.00018 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.06146 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.85056 * 180.02562 * 16 15 14 33 33 H 1.07997 * 119.91833 * 180.02562 * 19 18 17 34 34 H 1.00907 * 111.00067 * 295.74622 * 22 20 18 35 35 H 1.00900 * 111.00053 * 59.70030 * 22 20 18 36 36 H 1.09002 * 110.82242 * 144.59302 * 23 20 18 37 37 H 1.09003 * 110.82437 * 267.94011 * 23 20 18 38 38 H 1.09006 * 110.25421 * 78.26540 * 24 17 16 39 39 H 1.08994 * 110.49572 * 316.01801 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0788 -0.0854 0.5396 7 6 4.2303 -1.1934 2.3579 8 7 3.5764 -1.8385 3.2990 9 14 6.0921 -1.0622 2.4362 10 1 6.4709 0.1600 3.1898 11 1 6.6442 -2.2579 3.1224 12 1 6.6413 -0.9845 1.0586 13 8 2.0064 -0.6736 -1.1668 14 6 2.1089 0.0617 -2.3051 15 6 1.6546 1.3725 -2.3298 16 6 1.7604 2.1150 -3.4883 17 6 2.3179 1.5571 -4.6273 18 6 2.7703 0.2508 -4.6055 19 6 2.6646 -0.4967 -3.4454 20 6 3.3314 -0.1191 -5.9619 21 1 4.4207 -0.0839 -5.9431 22 7 2.8704 -1.4569 -6.3565 23 6 2.7778 0.9459 -6.9321 24 6 2.5399 2.1554 -6.0035 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0608 -2.2453 4.0345 31 1 1.2183 1.8106 -1.4443 32 1 1.4071 3.1354 -3.5070 33 1 3.0183 -1.5170 -3.4279 34 1 3.2266 -2.1620 -5.7286 35 1 1.8633 -1.4924 -6.4060 36 1 3.5105 1.1867 -7.7023 37 1 1.8420 0.6123 -7.3808 38 1 3.4158 2.8043 -5.9961 39 1 1.6591 2.7113 -6.3247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690712815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:01 Heat of formation + Delta-G solvation = -49.055540 kcal Electronic energy + Delta-G solvation = -19355.501243 eV Core-core repulsion = 16454.437885 eV Total energy + Delta-G solvation = -2901.063357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53143 -39.90957 -36.56922 -35.37109 -33.85497 -33.08023 -31.28717 -29.47217 -29.03523 -26.52259 -25.31446 -23.79870 -22.89154 -21.56357 -20.81467 -18.87478 -18.54335 -17.19586 -17.07109 -16.55321 -16.21063 -16.08495 -15.80584 -15.53573 -14.77983 -14.49565 -14.22364 -13.91188 -13.71348 -13.68259 -13.44820 -13.29498 -12.88725 -12.77539 -12.67105 -12.41650 -12.31143 -12.20812 -11.98427 -11.77506 -11.49821 -11.31355 -11.01912 -10.62484 -9.99528 -9.63182 -8.88848 -8.24927 -6.34268 0.32216 0.48819 1.34927 1.36425 1.47634 2.36749 2.37863 2.75556 3.09371 3.47086 3.59364 3.85810 3.89821 4.04108 4.10077 4.19101 4.27837 4.35971 4.38681 4.40832 4.50405 4.74766 4.78816 4.80125 4.96468 5.00926 5.04842 5.13559 5.19461 5.29876 5.32707 5.38453 5.46141 5.49065 5.62544 5.72011 5.90068 6.14888 6.15138 6.48036 6.67325 6.77404 7.33427 8.86809 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004929 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.004258 B = 5678.914554 C = 6220.787936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 H 0.064 0.936 4 C 0.029 3.971 5 C -0.533 4.533 6 H 0.048 0.952 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.273 1.273 13 O -0.323 6.323 14 C 0.115 3.885 15 C -0.218 4.218 16 C -0.070 4.070 17 C -0.145 4.145 18 C -0.105 4.105 19 C -0.163 4.163 20 C 0.132 3.868 21 H 0.095 0.905 22 N -0.836 5.836 23 C -0.103 4.103 24 C -0.070 4.070 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.026 0.974 29 H -0.002 1.002 30 H 0.265 0.735 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.343 0.657 35 H 0.345 0.655 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 8.295 -19.183 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.008 4.008 5 C -0.571 4.571 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.197 1.197 13 O -0.237 6.237 14 C 0.069 3.931 15 C -0.237 4.237 16 C -0.088 4.088 17 C -0.146 4.146 18 C -0.107 4.107 19 C -0.182 4.182 20 C 0.020 3.980 21 H 0.112 0.888 22 N -0.364 5.364 23 C -0.140 4.140 24 C -0.108 4.108 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.600 8.098 -19.684 21.587 hybrid contribution 0.332 -0.317 2.021 2.073 sum -3.268 7.781 -17.663 19.576 Atomic orbital electron populations 1.22305 0.94081 1.02776 1.03194 1.22574 0.93984 0.95995 0.83503 0.91813 1.19116 0.95530 0.95092 0.91090 1.21422 0.93260 1.34553 1.07850 0.93416 1.25840 1.03482 0.94711 0.95220 1.70058 1.37567 1.36623 1.12715 0.85533 0.79665 0.78144 0.78252 1.19258 1.20331 1.19742 1.86171 1.81103 1.39327 1.17081 1.19317 0.95322 0.91416 0.87021 1.21404 1.07481 0.94073 1.00723 1.20701 0.97197 1.00131 0.90747 1.20900 1.01443 0.95163 0.97085 1.21544 0.98039 0.95221 0.95898 1.19856 1.05819 1.01220 0.91355 1.21146 0.99579 0.90160 0.87147 0.88758 1.59043 1.16295 1.04321 1.56702 1.22342 1.02321 0.92630 0.96735 1.21084 1.03230 0.97857 0.88581 0.92557 0.89902 0.91123 0.95547 0.98362 0.92589 0.84789 0.83505 0.86716 0.84393 0.84192 0.88436 0.90145 0.89270 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 9.17 71.98 0.66 -5.02 16 2 C 0.09 4.09 2.17 30.59 0.07 4.15 16 3 H 0.06 2.67 6.32 -2.39 -0.02 2.65 16 4 C 0.03 1.53 4.68 29.85 0.14 1.67 16 5 C -0.53 -31.28 8.88 25.60 0.23 -31.05 16 6 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 7 C 0.01 0.32 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 O -0.32 -14.51 9.55 -92.46 -0.88 -15.39 16 14 C 0.12 4.36 6.60 22.48 0.15 4.50 16 15 C -0.22 -6.99 8.24 22.34 0.18 -6.81 16 16 C -0.07 -1.81 10.03 22.29 0.22 -1.58 16 17 C -0.15 -3.50 6.15 -19.47 -0.12 -3.62 16 18 C -0.10 -2.80 5.76 -19.60 -0.11 -2.91 16 19 C -0.16 -5.50 9.89 22.40 0.22 -5.28 16 20 C 0.13 2.69 4.01 44.84 0.18 2.87 16 21 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 22 N -0.84 -16.22 9.27 -169.00 -1.57 -17.79 16 23 C -0.10 -1.55 6.74 31.50 0.21 -1.33 16 24 C -0.07 -1.12 6.80 30.62 0.21 -0.91 16 25 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.07 2.09 6.90 -2.39 -0.02 2.07 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 31 H 0.13 4.11 5.44 -2.91 -0.02 4.09 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.11 3.87 8.05 -2.91 -0.02 3.85 16 34 H 0.34 6.82 9.01 -89.69 -0.81 6.02 16 35 H 0.35 6.27 8.88 -89.69 -0.80 5.48 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.15 7.98 -2.39 -0.02 1.13 16 38 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -67.69 319.35 2.02 -65.68 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.55 Total: 20.95 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 2.70 Total: -44.54 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -1.28 Total: -74.28 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.88 Total: -15.39 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.69 2.02 -65.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690712815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.623 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds