Wall clock time and date at job start Mon Mar 30 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 C 1.52999 * 109.47463 * 239.99686 * 2 1 3 5 5 C 1.50700 * 109.47140 * 175.00088 * 4 2 1 6 6 H 1.08006 * 119.99591 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00257 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00208 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99706 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47184 * 90.00282 * 9 7 5 11 11 H 1.48502 * 109.47338 * 210.00139 * 9 7 5 12 12 H 1.48502 * 109.47252 * 330.00561 * 9 7 5 13 13 O 1.42907 * 109.47033 * 119.99764 * 2 1 3 14 14 C 1.35903 * 116.99915 * 275.34008 * 13 2 1 15 15 C 1.38748 * 120.08984 * 5.07982 * 14 13 2 16 16 C 1.38005 * 119.87360 * 179.74185 * 15 14 13 17 17 C 1.38552 * 120.29261 * 0.51628 * 16 15 14 18 18 C 1.38260 * 119.93436 * 359.75652 * 17 16 15 19 19 C 1.38415 * 119.90525 * 359.97438 * 18 17 16 20 20 C 1.51376 * 109.75355 * 179.97438 * 18 17 16 21 21 H 1.08999 * 110.30439 * 136.12700 * 20 18 17 22 22 N 1.46906 * 110.30220 * 258.27394 * 20 18 17 23 23 C 1.54346 * 105.17341 * 17.19841 * 20 18 17 24 24 C 1.51384 * 130.32272 * 179.73455 * 17 16 15 25 25 H 1.09002 * 109.46981 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47136 * 60.00353 * 1 2 3 27 27 H 1.08995 * 109.47529 * 299.99757 * 1 2 3 28 28 H 1.08993 * 109.47057 * 295.00518 * 4 2 1 29 29 H 1.08997 * 109.46998 * 55.00175 * 4 2 1 30 30 H 0.97004 * 119.99600 * 179.97438 * 8 7 5 31 31 H 1.07993 * 120.06848 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.85668 * 180.29815 * 16 15 14 33 33 H 1.07996 * 119.91072 * 179.97438 * 19 18 17 34 34 H 1.00897 * 110.99761 * 298.54541 * 22 20 18 35 35 H 1.00896 * 110.99913 * 62.50259 * 22 20 18 36 36 H 1.08994 * 110.81812 * 91.85981 * 23 20 18 37 37 H 1.09003 * 110.81957 * 215.20868 * 23 20 18 38 38 H 1.09000 * 110.30576 * 43.89418 * 24 17 16 39 39 H 1.09005 * 110.30236 * 281.74100 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0789 -0.0854 -0.5394 7 6 4.2305 -1.1927 -2.3581 8 7 5.5411 -1.0994 -2.4136 9 14 3.3017 -2.1079 -3.6957 10 1 2.9400 -1.1628 -4.7825 11 1 4.1605 -3.1880 -4.2444 12 1 2.0660 -2.7004 -3.1235 13 8 2.0063 -0.6736 1.1669 14 6 2.1057 0.0609 2.3060 15 6 1.6540 1.3726 2.3294 16 6 1.7523 2.1128 3.4901 17 6 2.3098 1.5553 4.6294 18 6 2.7657 0.2502 4.6067 19 6 2.6635 -0.4964 3.4457 20 6 3.3261 -0.1196 5.9635 21 1 2.9864 -1.1135 6.2548 22 7 4.7940 -0.0681 5.9400 23 6 2.7683 0.9429 6.9342 24 6 2.5327 2.1510 6.0031 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 6.0255 -1.5062 -3.1491 31 1 1.2230 1.8124 1.4423 32 1 1.3962 3.1322 3.5094 33 1 3.0200 -1.5157 3.4278 34 1 5.1684 -0.7277 5.2745 35 1 5.1199 0.8667 5.7451 36 1 1.8312 0.6077 7.3785 37 1 3.4982 1.1823 7.7075 38 1 1.6513 2.7078 6.3215 39 1 3.4087 2.7996 5.9965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690712818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:03 Heat of formation + Delta-G solvation = -25.636143 kcal Electronic energy + Delta-G solvation = -19380.282457 eV Core-core repulsion = 16480.234640 eV Total energy + Delta-G solvation = -2900.047816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38259 -38.68314 -35.44985 -33.48790 -32.29657 -31.62354 -30.25139 -28.21570 -27.88496 -25.78587 -23.18817 -22.70431 -21.24019 -20.51637 -19.44513 -17.47488 -16.76653 -16.50060 -15.61157 -15.31157 -14.94887 -14.51040 -14.24493 -14.14353 -13.56388 -13.30459 -13.02531 -12.73371 -12.55480 -12.34806 -12.12437 -11.86179 -11.71213 -11.52988 -11.22903 -11.00021 -10.94684 -10.68427 -10.62112 -10.24774 -9.76562 -9.59771 -9.25732 -9.04728 -8.57678 -8.52951 -7.64432 -6.06400 -4.04685 1.49276 1.68751 3.26954 3.35525 3.38151 3.73761 3.93773 4.41682 4.45321 4.51573 4.75204 5.04384 5.10661 5.11019 5.26487 5.30622 5.43154 5.50531 5.54987 5.62032 5.69347 5.77039 5.80933 5.87811 5.91649 6.04229 6.09660 6.28454 6.37460 6.45293 6.53683 6.70240 6.76088 6.89888 7.04513 7.05523 7.19329 7.35983 7.69267 8.06651 8.48958 8.98051 9.54095 11.07125 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.004752 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.545243 B = 5891.145114 C = 6476.688306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.096 3.904 3 H 0.068 0.932 4 C -0.011 4.011 5 C -0.516 4.516 6 H 0.072 0.928 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.877 3.123 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.265 1.265 13 O -0.290 6.290 14 C 0.152 3.848 15 C -0.208 4.208 16 C -0.070 4.070 17 C -0.147 4.147 18 C -0.104 4.104 19 C -0.141 4.141 20 C 0.131 3.869 21 H 0.088 0.912 22 N -0.833 5.833 23 C -0.115 4.115 24 C -0.076 4.076 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.346 0.654 35 H 0.341 0.659 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 5.330 14.883 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.048 4.048 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.704 3.296 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.190 1.190 13 O -0.202 6.202 14 C 0.105 3.895 15 C -0.227 4.227 16 C -0.088 4.088 17 C -0.148 4.148 18 C -0.106 4.106 19 C -0.160 4.160 20 C 0.020 3.980 21 H 0.106 0.894 22 N -0.361 5.361 23 C -0.153 4.153 24 C -0.113 4.113 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.294 4.825 15.512 18.240 hybrid contribution -0.574 0.025 -2.110 2.186 sum -8.868 4.849 13.403 16.786 Atomic orbital electron populations 1.22452 0.96904 1.02677 1.01761 1.22570 0.91632 0.97158 0.84646 0.91453 1.19725 0.98121 0.96503 0.90450 1.20994 0.89345 1.35435 1.09594 0.90977 1.24991 0.94748 0.95756 0.97842 1.69910 1.06535 1.45289 1.32255 0.86823 0.80339 0.80097 0.82309 1.20249 1.21221 1.18970 1.86249 1.79957 1.37995 1.16012 1.18984 0.92986 0.90172 0.87365 1.21272 1.07288 0.94671 0.99463 1.20339 0.98004 0.99009 0.91443 1.20342 1.03330 0.95516 0.95595 1.21148 0.98842 0.94827 0.95817 1.19810 1.04498 1.01008 0.90694 1.20888 0.87748 0.99843 0.89535 0.89414 1.59168 1.06506 1.12276 1.58117 1.22344 1.01227 0.94487 0.97205 1.20952 1.01622 0.97641 0.91108 0.91899 0.91335 0.92893 0.95331 0.94932 0.92695 0.85071 0.86530 0.85688 0.84078 0.84686 0.90625 0.89789 0.91135 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.17 37.16 0.34 -2.53 16 2 C 0.10 1.92 2.17 -26.73 -0.06 1.86 16 3 H 0.07 1.34 6.31 -51.93 -0.33 1.01 16 4 C -0.01 -0.26 3.75 -27.88 -0.10 -0.36 16 5 C -0.52 -14.76 9.43 -34.44 -0.32 -15.08 16 6 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 9 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 O -0.29 -6.15 9.55 -19.44 -0.19 -6.34 16 14 C 0.15 2.82 6.59 -39.26 -0.26 2.56 16 15 C -0.21 -3.38 8.23 -39.48 -0.33 -3.71 16 16 C -0.07 -0.99 10.03 -39.55 -0.40 -1.38 16 17 C -0.15 -1.97 6.14 -104.16 -0.64 -2.61 16 18 C -0.10 -1.47 5.74 -104.22 -0.60 -2.07 16 19 C -0.14 -2.37 9.98 -39.39 -0.39 -2.76 16 20 C 0.13 1.51 4.01 -67.82 -0.27 1.24 16 21 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 22 N -0.83 -9.29 9.29 -4.76 -0.04 -9.33 16 23 C -0.11 -1.09 6.70 -25.33 -0.17 -1.26 16 24 C -0.08 -0.77 6.77 -26.85 -0.18 -0.96 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.76 6.91 -51.93 -0.36 0.40 16 28 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 29 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 31 H 0.13 2.01 5.44 -52.49 -0.29 1.73 16 32 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.35 3.93 9.06 -39.29 -0.36 3.57 16 35 H 0.34 3.66 8.97 -39.29 -0.35 3.31 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -31.30 316.02 -8.68 -39.98 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.84 Total: 6.41 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -3.48 Total: -25.19 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.73 Total: -36.46 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.19 Total: -6.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.30 -8.68 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690712818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.340 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds