Wall clock time and date at job start Mon Mar 30 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 C 1.52999 * 109.47463 * 239.99686 * 2 1 3 5 5 C 1.50700 * 109.47140 * 175.00088 * 4 2 1 6 6 H 1.08006 * 119.99591 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00257 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00208 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99706 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47184 * 90.00282 * 9 7 5 11 11 H 1.48502 * 109.47338 * 210.00139 * 9 7 5 12 12 H 1.48502 * 109.47252 * 330.00561 * 9 7 5 13 13 O 1.42907 * 109.47033 * 119.99764 * 2 1 3 14 14 C 1.35903 * 116.99915 * 275.34008 * 13 2 1 15 15 C 1.38748 * 120.08984 * 5.07982 * 14 13 2 16 16 C 1.38005 * 119.87360 * 179.74185 * 15 14 13 17 17 C 1.38552 * 120.29261 * 0.51628 * 16 15 14 18 18 C 1.38260 * 119.93436 * 359.75652 * 17 16 15 19 19 C 1.38415 * 119.90525 * 359.97438 * 18 17 16 20 20 C 1.51376 * 109.75355 * 179.97438 * 18 17 16 21 21 H 1.08999 * 110.30439 * 136.12700 * 20 18 17 22 22 N 1.46906 * 110.30220 * 258.27394 * 20 18 17 23 23 C 1.54346 * 105.17341 * 17.19841 * 20 18 17 24 24 C 1.51384 * 130.32272 * 179.73455 * 17 16 15 25 25 H 1.09002 * 109.46981 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47136 * 60.00353 * 1 2 3 27 27 H 1.08995 * 109.47529 * 299.99757 * 1 2 3 28 28 H 1.08993 * 109.47057 * 295.00518 * 4 2 1 29 29 H 1.08997 * 109.46998 * 55.00175 * 4 2 1 30 30 H 0.97004 * 119.99600 * 179.97438 * 8 7 5 31 31 H 1.07993 * 120.06848 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.85668 * 180.29815 * 16 15 14 33 33 H 1.07996 * 119.91072 * 179.97438 * 19 18 17 34 34 H 1.00897 * 110.99761 * 298.54541 * 22 20 18 35 35 H 1.00896 * 110.99913 * 62.50259 * 22 20 18 36 36 H 1.08994 * 110.81812 * 91.85981 * 23 20 18 37 37 H 1.09003 * 110.81957 * 215.20868 * 23 20 18 38 38 H 1.09000 * 110.30576 * 43.89418 * 24 17 16 39 39 H 1.09005 * 110.30236 * 281.74100 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0789 -0.0854 -0.5394 7 6 4.2305 -1.1927 -2.3581 8 7 5.5411 -1.0994 -2.4136 9 14 3.3017 -2.1079 -3.6957 10 1 2.9400 -1.1628 -4.7825 11 1 4.1605 -3.1880 -4.2444 12 1 2.0660 -2.7004 -3.1235 13 8 2.0063 -0.6736 1.1669 14 6 2.1057 0.0609 2.3060 15 6 1.6540 1.3726 2.3294 16 6 1.7523 2.1128 3.4901 17 6 2.3098 1.5553 4.6294 18 6 2.7657 0.2502 4.6067 19 6 2.6635 -0.4964 3.4457 20 6 3.3261 -0.1196 5.9635 21 1 2.9864 -1.1135 6.2548 22 7 4.7940 -0.0681 5.9400 23 6 2.7683 0.9429 6.9342 24 6 2.5327 2.1510 6.0031 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 6.0255 -1.5062 -3.1491 31 1 1.2230 1.8124 1.4423 32 1 1.3962 3.1322 3.5094 33 1 3.0200 -1.5157 3.4278 34 1 5.1684 -0.7277 5.2745 35 1 5.1199 0.8667 5.7451 36 1 1.8312 0.6077 7.3785 37 1 3.4982 1.1823 7.7075 38 1 1.6513 2.7078 6.3215 39 1 3.4087 2.7996 5.9965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690712818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:03 Heat of formation + Delta-G solvation = -46.197439 kcal Electronic energy + Delta-G solvation = -19381.174061 eV Core-core repulsion = 16480.234640 eV Total energy + Delta-G solvation = -2900.939421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56942 -39.97655 -36.64821 -35.31443 -33.82431 -32.95117 -31.45356 -29.85159 -29.12382 -26.76999 -24.99301 -23.85721 -22.75040 -21.48495 -20.82836 -19.04015 -18.73098 -17.49540 -16.82852 -16.58732 -16.30141 -16.01338 -15.77918 -15.22858 -14.84888 -14.56851 -14.33248 -14.12631 -14.05125 -13.79923 -13.58933 -13.37804 -12.88517 -12.77649 -12.52198 -12.29403 -12.22437 -11.89073 -11.82196 -11.78683 -11.61279 -11.31573 -11.16913 -10.80232 -10.10787 -9.62467 -8.90745 -8.31290 -6.35857 0.29810 0.46832 1.33537 1.36997 1.48457 2.33944 2.36285 2.73300 3.04695 3.51422 3.53847 3.83454 3.87848 4.00671 4.07586 4.14401 4.25607 4.31950 4.37310 4.40929 4.49295 4.74641 4.78617 4.85187 4.90389 4.98800 5.02983 5.05073 5.15191 5.21710 5.27698 5.28845 5.38835 5.46417 5.58457 5.62252 5.88338 6.11651 6.21344 6.43680 6.62635 6.71650 7.26957 8.86168 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.004752 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.545243 B = 5891.145114 C = 6476.688306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.525 4.525 6 H 0.021 0.979 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.953 3.047 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.246 1.246 13 O -0.324 6.324 14 C 0.115 3.885 15 C -0.216 4.216 16 C -0.072 4.072 17 C -0.143 4.143 18 C -0.106 4.106 19 C -0.162 4.162 20 C 0.130 3.870 21 H 0.088 0.912 22 N -0.830 5.830 23 C -0.106 4.106 24 C -0.072 4.072 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.053 0.947 30 H 0.266 0.734 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.342 0.658 35 H 0.344 0.656 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 6.306 15.842 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.563 4.563 6 H 0.040 0.960 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.776 3.224 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.170 1.170 13 O -0.238 6.238 14 C 0.069 3.931 15 C -0.234 4.234 16 C -0.089 4.089 17 C -0.143 4.143 18 C -0.108 4.108 19 C -0.182 4.182 20 C 0.018 3.982 21 H 0.106 0.894 22 N -0.357 5.357 23 C -0.144 4.144 24 C -0.109 4.109 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.459 5.820 16.498 20.382 hybrid contribution 0.206 -0.215 -2.253 2.273 sum -10.253 5.605 14.245 18.424 Atomic orbital electron populations 1.22342 0.93246 1.03321 1.03619 1.22475 0.94347 0.95895 0.83304 0.92223 1.19694 0.94679 0.96993 0.93366 1.21266 0.92162 1.34658 1.08201 0.96022 1.26044 0.95655 0.96803 1.00847 1.70082 1.08716 1.46935 1.33611 0.85618 0.79259 0.78733 0.78794 1.18337 1.21098 1.16967 1.86153 1.81237 1.39356 1.17063 1.19298 0.95382 0.91460 0.86956 1.21412 1.07420 0.93922 1.00696 1.20707 0.97335 1.00155 0.90750 1.20872 1.01289 0.95162 0.97021 1.21503 0.98206 0.95133 0.96000 1.19962 1.05411 1.01109 0.91706 1.21047 0.87763 1.00866 0.88539 0.89382 1.59210 1.06322 1.12398 1.57781 1.22367 1.02109 0.93167 0.96756 1.21047 1.03132 0.98025 0.88726 0.91826 0.89113 0.91341 0.95656 0.92907 0.92483 0.84589 0.83442 0.86894 0.84537 0.84328 0.89305 0.88371 0.88931 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.09 9.17 71.98 0.66 -4.43 16 2 C 0.10 3.89 2.17 30.59 0.07 3.95 16 3 H 0.06 2.45 6.31 -2.39 -0.02 2.44 16 4 C -0.01 -0.48 3.75 29.85 0.11 -0.37 16 5 C -0.52 -31.29 9.43 25.60 0.24 -31.05 16 6 H 0.02 1.45 7.99 -2.91 -0.02 1.43 16 7 C 0.00 0.17 5.47 84.65 0.46 0.64 16 8 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 9 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 13 O -0.32 -14.46 9.55 -92.46 -0.88 -15.34 16 14 C 0.11 4.44 6.59 22.48 0.15 4.59 16 15 C -0.22 -7.02 8.23 22.34 0.18 -6.84 16 16 C -0.07 -1.90 10.03 22.29 0.22 -1.68 16 17 C -0.14 -3.55 6.14 -19.57 -0.12 -3.67 16 18 C -0.11 -2.96 5.74 -19.60 -0.11 -3.08 16 19 C -0.16 -5.73 9.98 22.40 0.22 -5.51 16 20 C 0.13 2.80 4.01 44.84 0.18 2.98 16 21 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 22 N -0.83 -17.76 9.29 -168.98 -1.57 -19.33 16 23 C -0.11 -1.68 6.70 31.50 0.21 -1.47 16 24 C -0.07 -1.21 6.77 30.52 0.21 -1.01 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 1.85 6.91 -2.39 -0.02 1.84 16 28 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 29 H 0.05 2.29 7.57 -2.39 -0.02 2.27 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.14 4.15 5.44 -2.91 -0.02 4.14 16 32 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.11 4.07 8.06 -2.91 -0.02 4.04 16 34 H 0.34 7.86 9.06 -89.70 -0.81 7.05 16 35 H 0.34 6.95 8.97 -89.70 -0.80 6.14 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.34 8.08 -2.39 -0.02 1.32 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -71.39 316.02 1.81 -69.58 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.61 Total: 26.63 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 2.69 Total: -46.94 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.27 Total: -80.27 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.88 Total: -15.34 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -71.39 1.81 -69.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690712818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.387 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds