Wall clock time and date at job start Mon Mar 30 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47361 * 2 1 4 4 C 1.53003 * 109.47014 * 119.99886 * 2 1 3 5 5 C 1.50697 * 109.47016 * 184.99958 * 4 2 1 6 6 H 1.08001 * 120.00335 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99987 * 179.72158 * 5 4 2 8 8 N 1.31516 * 120.00263 * 180.27523 * 7 5 4 9 9 Si 1.86798 * 120.00102 * 0.27706 * 7 5 4 10 10 H 1.48494 * 109.47209 * 89.99728 * 9 7 5 11 11 H 1.48500 * 109.47463 * 210.00018 * 9 7 5 12 12 H 1.48507 * 109.47054 * 329.99689 * 9 7 5 13 13 O 1.42898 * 109.47054 * 239.99661 * 2 1 3 14 14 C 1.35895 * 117.00272 * 84.95168 * 13 2 1 15 15 C 1.38747 * 120.09191 * 354.56517 * 14 13 2 16 16 C 1.38004 * 119.88265 * 179.97438 * 15 14 13 17 17 C 1.38551 * 120.28866 * 0.02562 * 16 15 14 18 18 C 1.38256 * 119.93530 * 359.97438 * 17 16 15 19 19 C 1.38412 * 119.90824 * 359.74433 * 18 17 16 20 20 C 1.51385 * 109.75479 * 180.02562 * 18 17 16 21 21 H 1.09006 * 110.30087 * 223.87968 * 20 18 17 22 22 N 1.46894 * 110.38830 * 101.76585 * 20 18 17 23 23 C 1.54340 * 105.16800 * 342.79641 * 20 18 17 24 24 C 1.51388 * 130.31998 * 180.02562 * 17 16 15 25 25 H 1.09002 * 109.47259 * 60.00268 * 1 2 3 26 26 H 1.09000 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47542 * 300.00096 * 1 2 3 28 28 H 1.08998 * 109.47488 * 65.00126 * 4 2 1 29 29 H 1.08999 * 109.46854 * 304.99534 * 4 2 1 30 30 H 0.96997 * 120.00014 * 179.97438 * 8 7 5 31 31 H 1.08010 * 120.05943 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.85823 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.91974 * 180.25314 * 19 18 17 34 34 H 1.00903 * 110.99572 * 64.20570 * 22 20 18 35 35 H 1.00897 * 111.00283 * 188.15779 * 22 20 18 36 36 H 1.08999 * 110.82616 * 268.14462 * 23 20 18 37 37 H 1.09004 * 110.82013 * 144.59618 * 23 20 18 38 38 H 1.09000 * 110.30517 * 316.10042 * 24 17 16 39 39 H 1.08991 * 110.30539 * 78.25575 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5397 7 6 4.2298 -1.1881 2.3611 8 7 5.5401 -1.0907 2.4194 9 14 3.3009 -2.1032 3.6987 10 1 3.1756 -3.5345 3.3238 11 1 4.0411 -1.9904 4.9812 12 1 1.9476 -1.5120 3.8547 13 8 2.0063 -0.6737 -1.1667 14 6 2.1115 0.0621 -2.3044 15 6 1.6586 1.3734 -2.3291 16 6 1.7681 2.1169 -3.4866 17 6 2.3279 1.5595 -4.6248 18 6 2.7799 0.2531 -4.6026 19 6 2.6768 -0.4932 -3.4415 20 6 3.3438 -0.1163 -5.9581 21 1 3.0021 -1.1088 -6.2521 22 7 4.8118 -0.0707 -5.9313 23 6 2.7925 0.9493 -6.9289 24 6 2.5578 2.1570 -5.9967 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7516 -1.7715 1.2057 29 1 1.6053 -0.2616 2.1370 30 1 6.0240 -1.4937 3.1572 31 1 1.2212 1.8115 -1.4440 32 1 1.4151 3.1374 -3.5055 33 1 3.0335 -1.5124 -3.4228 34 1 5.1836 -0.7638 -5.2992 35 1 5.1941 -0.1844 -6.8581 36 1 1.8558 0.6177 -7.3770 37 1 3.5269 1.1903 -7.6974 38 1 1.6794 2.7172 -6.3173 39 1 3.4358 2.8026 -5.9858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690728974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:05 Heat of formation + Delta-G solvation = -22.231869 kcal Electronic energy + Delta-G solvation = -19350.175645 eV Core-core repulsion = 16450.275449 eV Total energy + Delta-G solvation = -2899.900196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24675 -38.57015 -35.41026 -33.45633 -32.30851 -31.61035 -30.29586 -28.14493 -27.82170 -25.70560 -23.13580 -22.66453 -21.16543 -20.50446 -19.32772 -17.35893 -16.72507 -16.18816 -15.59768 -15.53789 -14.94038 -14.61358 -14.26514 -14.05946 -13.60180 -13.15029 -12.97298 -12.72848 -12.45614 -12.13983 -11.91752 -11.75920 -11.68607 -11.51689 -11.37922 -11.14980 -10.88150 -10.60700 -10.44715 -10.06734 -9.82903 -9.54054 -9.21558 -8.83644 -8.53680 -8.50467 -7.53877 -6.02249 -4.00324 1.59765 1.80380 3.31017 3.37987 3.39309 3.78450 4.03645 4.44882 4.46825 4.59253 4.69527 5.04089 5.14311 5.20340 5.31417 5.47027 5.49276 5.56011 5.57932 5.61855 5.70291 5.75550 5.82450 5.95382 5.96797 6.09498 6.15821 6.37270 6.43843 6.51926 6.61123 6.78850 6.89894 6.98123 7.05792 7.10600 7.24365 7.37622 7.73469 8.14163 8.53653 9.03226 9.58123 11.11308 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.004746 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.319821 B = 5898.010140 C = 6490.179802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.068 0.932 4 C -0.011 4.011 5 C -0.515 4.515 6 H 0.073 0.927 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.291 6.291 14 C 0.151 3.849 15 C -0.208 4.208 16 C -0.072 4.072 17 C -0.137 4.137 18 C -0.057 4.057 19 C -0.141 4.141 20 C 0.132 3.868 21 H 0.043 0.957 22 N -0.838 5.838 23 C -0.115 4.115 24 C -0.066 4.066 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.347 0.653 35 H 0.340 0.660 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 4.035 -16.434 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.048 4.048 5 C -0.553 4.553 6 H 0.091 0.909 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.705 3.295 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.191 1.191 13 O -0.204 6.204 14 C 0.104 3.896 15 C -0.227 4.227 16 C -0.090 4.090 17 C -0.138 4.138 18 C -0.058 4.058 19 C -0.160 4.160 20 C 0.021 3.979 21 H 0.060 0.940 22 N -0.369 5.369 23 C -0.153 4.153 24 C -0.103 4.103 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.307 4.512 -16.006 18.589 hybrid contribution -0.398 -1.330 0.649 1.532 sum -8.705 3.182 -15.357 17.937 Atomic orbital electron populations 1.22449 0.96966 1.02603 1.01743 1.22565 0.91583 0.97239 0.84623 0.91383 1.19737 0.98167 0.96187 0.90699 1.21015 0.89366 1.35479 1.09403 0.90868 1.24995 0.94737 0.95835 0.97805 1.69915 1.06549 1.45427 1.32131 0.86812 0.80336 0.80716 0.81595 1.20227 1.21339 1.19095 1.86233 1.80103 1.37894 1.16121 1.18914 0.93213 0.90206 0.87304 1.21247 1.07322 0.94640 0.99458 1.20309 0.98227 0.98975 0.91458 1.20279 1.02728 0.95075 0.95684 1.19997 0.97573 0.94458 0.93739 1.19761 1.04520 1.01070 0.90699 1.20688 0.88153 0.97245 0.91800 0.93959 1.58638 1.05091 1.58851 1.14311 1.22340 1.00680 0.95247 0.96998 1.20826 1.01353 0.97252 0.90850 0.92875 0.91968 0.91382 0.95820 0.94538 0.92740 0.85125 0.86524 0.85922 0.83930 0.84710 0.90884 0.90490 0.91569 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.17 37.16 0.34 -2.57 16 2 C 0.10 1.95 2.17 -26.73 -0.06 1.90 16 3 H 0.07 1.38 6.31 -51.93 -0.33 1.06 16 4 C -0.01 -0.26 3.75 -27.88 -0.10 -0.36 16 5 C -0.51 -14.91 9.43 -34.44 -0.32 -15.24 16 6 H 0.07 2.33 7.99 -52.49 -0.42 1.92 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 9 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 O -0.29 -6.29 9.55 -19.41 -0.19 -6.48 16 14 C 0.15 2.88 6.60 -39.26 -0.26 2.62 16 15 C -0.21 -3.51 8.24 -39.48 -0.33 -3.83 16 16 C -0.07 -1.06 10.03 -39.55 -0.40 -1.46 16 17 C -0.14 -1.98 6.14 -104.16 -0.64 -2.62 16 18 C -0.06 -0.86 5.77 -104.21 -0.60 -1.46 16 19 C -0.14 -2.48 9.98 -39.38 -0.39 -2.87 16 20 C 0.13 1.55 3.99 -67.83 -0.27 1.28 16 21 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 22 N -0.84 -9.37 9.28 -4.77 -0.04 -9.41 16 23 C -0.11 -1.12 6.76 -25.32 -0.17 -1.29 16 24 C -0.07 -0.74 6.77 -26.83 -0.18 -0.92 16 25 H 0.05 0.77 6.91 -51.93 -0.36 0.41 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.02 0.57 7.58 -51.93 -0.39 0.18 16 29 H 0.04 0.84 7.19 -51.93 -0.37 0.47 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.13 2.07 5.44 -52.48 -0.29 1.78 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.35 3.94 9.07 -39.29 -0.36 3.58 16 35 H 0.34 2.86 8.91 -39.29 -0.35 2.51 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.63 7.97 -51.93 -0.41 0.22 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -32.46 315.93 -8.67 -41.13 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.83 Total: 5.30 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -3.48 Total: -24.94 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.73 Total: -36.82 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.19 Total: -6.48 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.46 -8.67 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690728974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.899 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds