Wall clock time and date at job start Mon Mar 30 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47361 * 2 1 4 4 C 1.53003 * 109.47014 * 119.99886 * 2 1 3 5 5 C 1.50697 * 109.47016 * 184.99958 * 4 2 1 6 6 H 1.08001 * 120.00335 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99987 * 179.72158 * 5 4 2 8 8 N 1.31516 * 120.00263 * 180.27523 * 7 5 4 9 9 Si 1.86798 * 120.00102 * 0.27706 * 7 5 4 10 10 H 1.48494 * 109.47209 * 89.99728 * 9 7 5 11 11 H 1.48500 * 109.47463 * 210.00018 * 9 7 5 12 12 H 1.48507 * 109.47054 * 329.99689 * 9 7 5 13 13 O 1.42898 * 109.47054 * 239.99661 * 2 1 3 14 14 C 1.35895 * 117.00272 * 84.95168 * 13 2 1 15 15 C 1.38747 * 120.09191 * 354.56517 * 14 13 2 16 16 C 1.38004 * 119.88265 * 179.97438 * 15 14 13 17 17 C 1.38551 * 120.28866 * 0.02562 * 16 15 14 18 18 C 1.38256 * 119.93530 * 359.97438 * 17 16 15 19 19 C 1.38412 * 119.90824 * 359.74433 * 18 17 16 20 20 C 1.51385 * 109.75479 * 180.02562 * 18 17 16 21 21 H 1.09006 * 110.30087 * 223.87968 * 20 18 17 22 22 N 1.46894 * 110.38830 * 101.76585 * 20 18 17 23 23 C 1.54340 * 105.16800 * 342.79641 * 20 18 17 24 24 C 1.51388 * 130.31998 * 180.02562 * 17 16 15 25 25 H 1.09002 * 109.47259 * 60.00268 * 1 2 3 26 26 H 1.09000 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47542 * 300.00096 * 1 2 3 28 28 H 1.08998 * 109.47488 * 65.00126 * 4 2 1 29 29 H 1.08999 * 109.46854 * 304.99534 * 4 2 1 30 30 H 0.96997 * 120.00014 * 179.97438 * 8 7 5 31 31 H 1.08010 * 120.05943 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.85823 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.91974 * 180.25314 * 19 18 17 34 34 H 1.00903 * 110.99572 * 64.20570 * 22 20 18 35 35 H 1.00897 * 111.00283 * 188.15779 * 22 20 18 36 36 H 1.08999 * 110.82616 * 268.14462 * 23 20 18 37 37 H 1.09004 * 110.82013 * 144.59618 * 23 20 18 38 38 H 1.09000 * 110.30517 * 316.10042 * 24 17 16 39 39 H 1.08991 * 110.30539 * 78.25575 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5397 7 6 4.2298 -1.1881 2.3611 8 7 5.5401 -1.0907 2.4194 9 14 3.3009 -2.1032 3.6987 10 1 3.1756 -3.5345 3.3238 11 1 4.0411 -1.9904 4.9812 12 1 1.9476 -1.5120 3.8547 13 8 2.0063 -0.6737 -1.1667 14 6 2.1115 0.0621 -2.3044 15 6 1.6586 1.3734 -2.3291 16 6 1.7681 2.1169 -3.4866 17 6 2.3279 1.5595 -4.6248 18 6 2.7799 0.2531 -4.6026 19 6 2.6768 -0.4932 -3.4415 20 6 3.3438 -0.1163 -5.9581 21 1 3.0021 -1.1088 -6.2521 22 7 4.8118 -0.0707 -5.9313 23 6 2.7925 0.9493 -6.9289 24 6 2.5578 2.1570 -5.9967 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7516 -1.7715 1.2057 29 1 1.6053 -0.2616 2.1370 30 1 6.0240 -1.4937 3.1572 31 1 1.2212 1.8115 -1.4440 32 1 1.4151 3.1374 -3.5055 33 1 3.0335 -1.5124 -3.4228 34 1 5.1836 -0.7638 -5.2992 35 1 5.1941 -0.1844 -6.8581 36 1 1.8558 0.6177 -7.3770 37 1 3.5269 1.1903 -7.6974 38 1 1.6794 2.7172 -6.3173 39 1 3.4358 2.8026 -5.9858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690728974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:05 Heat of formation + Delta-G solvation = -43.977499 kcal Electronic energy + Delta-G solvation = -19351.118606 eV Core-core repulsion = 16450.275449 eV Total energy + Delta-G solvation = -2900.843157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48580 -39.88697 -36.62011 -35.30416 -33.82336 -32.99999 -31.54590 -29.83437 -29.06863 -26.72457 -24.97313 -23.83876 -22.71759 -21.53431 -20.72958 -19.00354 -18.66229 -17.27115 -16.78169 -16.65313 -16.27753 -16.11524 -15.87293 -15.37817 -14.82239 -14.50248 -14.34181 -14.11388 -14.08713 -13.80760 -13.47950 -13.08779 -12.80425 -12.72110 -12.57089 -12.32205 -12.22327 -12.01130 -11.79645 -11.75975 -11.55811 -11.31556 -11.14865 -10.78559 -9.91696 -9.56641 -8.85401 -8.29499 -6.34170 0.35535 0.52664 1.35289 1.37612 1.48814 2.34633 2.38950 2.78361 3.06391 3.52643 3.59964 3.79550 3.91621 4.03858 4.09543 4.17194 4.23113 4.33994 4.41496 4.50293 4.52494 4.70785 4.79396 4.85115 4.93369 4.99795 5.01902 5.04929 5.17988 5.26562 5.28424 5.30492 5.41070 5.50135 5.60230 5.70940 5.92470 6.17494 6.23612 6.59410 6.65865 6.74082 7.28407 8.88086 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.004746 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.319821 B = 5898.010140 C = 6490.179802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.525 4.525 6 H 0.021 0.979 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.237 1.237 13 O -0.324 6.324 14 C 0.114 3.886 15 C -0.216 4.216 16 C -0.074 4.074 17 C -0.138 4.138 18 C -0.064 4.064 19 C -0.164 4.164 20 C 0.129 3.871 21 H 0.050 0.950 22 N -0.846 5.846 23 C -0.107 4.107 24 C -0.065 4.065 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.054 0.946 30 H 0.266 0.734 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.112 0.888 34 H 0.343 0.657 35 H 0.357 0.643 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 4.745 -17.511 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.563 4.563 6 H 0.039 0.961 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.160 1.160 13 O -0.238 6.238 14 C 0.069 3.931 15 C -0.235 4.235 16 C -0.092 4.092 17 C -0.139 4.139 18 C -0.065 4.065 19 C -0.183 4.183 20 C 0.018 3.982 21 H 0.068 0.932 22 N -0.379 5.379 23 C -0.144 4.144 24 C -0.101 4.101 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.520 5.239 -17.121 20.766 hybrid contribution 0.403 -1.483 0.835 1.750 sum -10.117 3.756 -16.285 19.536 Atomic orbital electron populations 1.22336 0.93190 1.03360 1.03587 1.22481 0.94389 0.95916 0.83292 0.92306 1.19704 0.94639 0.96890 0.93463 1.21281 0.92227 1.34737 1.08034 0.96101 1.26061 0.95661 0.96865 1.00843 1.70089 1.08784 1.47068 1.33489 0.85600 0.79977 0.79142 0.77562 1.19569 1.20793 1.16013 1.86139 1.81336 1.39204 1.17129 1.19233 0.95494 0.91471 0.86939 1.21395 1.07485 0.93920 1.00654 1.20690 0.97544 1.00141 0.90806 1.20851 1.00975 0.94889 0.97183 1.20450 0.96998 0.94750 0.94301 1.19935 1.05412 1.01242 0.91706 1.20807 0.88425 0.98576 0.90348 0.93231 1.58623 1.04934 1.58838 1.15459 1.22391 1.01959 0.93509 0.96567 1.20931 1.02465 0.97917 0.88835 0.91320 0.91720 0.89195 0.95716 0.92755 0.92503 0.84533 0.83445 0.86942 0.84451 0.82801 0.89214 0.88432 0.89133 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 9.17 71.98 0.66 -4.49 16 2 C 0.09 3.93 2.17 30.59 0.07 4.00 16 3 H 0.06 2.48 6.31 -2.39 -0.02 2.46 16 4 C -0.01 -0.47 3.75 29.85 0.11 -0.36 16 5 C -0.52 -31.68 9.43 25.60 0.24 -31.44 16 6 H 0.02 1.42 7.99 -2.91 -0.02 1.40 16 7 C 0.00 0.12 5.47 84.65 0.46 0.58 16 8 N -0.95 -61.94 13.96 21.45 0.30 -61.64 16 9 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 13 O -0.32 -14.72 9.55 -92.37 -0.88 -15.60 16 14 C 0.11 4.57 6.60 22.48 0.15 4.72 16 15 C -0.22 -7.34 8.24 22.34 0.18 -7.16 16 16 C -0.07 -2.10 10.03 22.29 0.22 -1.88 16 17 C -0.14 -3.78 6.14 -19.57 -0.12 -3.90 16 18 C -0.06 -1.93 5.77 -19.60 -0.11 -2.04 16 19 C -0.16 -6.03 9.98 22.40 0.22 -5.80 16 20 C 0.13 2.85 3.99 44.84 0.18 3.03 16 21 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 22 N -0.85 -18.03 9.28 -168.99 -1.57 -19.60 16 23 C -0.11 -1.72 6.76 31.51 0.21 -1.50 16 24 C -0.06 -1.24 6.77 30.53 0.21 -1.03 16 25 H 0.07 1.89 6.91 -2.39 -0.02 1.87 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.02 1.17 7.58 -2.39 -0.02 1.16 16 29 H 0.05 2.41 7.19 -2.39 -0.02 2.39 16 30 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.14 4.33 5.44 -2.91 -0.02 4.31 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.34 7.84 9.07 -89.69 -0.81 7.03 16 35 H 0.36 5.35 8.91 -89.70 -0.80 4.55 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.21 7.97 -2.38 -0.02 1.19 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -74.22 315.93 1.81 -72.40 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.61 Total: 25.00 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 2.69 Total: -47.29 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.27 Total: -81.23 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.88 Total: -15.60 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -74.22 1.81 -72.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690728974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.426 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds