Wall clock time and date at job start Mon Mar 30 2020 06:22:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09002 * 109.47846 * 2 1
4 4 C 1.53006 * 109.47337 * 239.99677 * 2 1 3
5 5 C 1.50700 * 109.47242 * 175.00043 * 4 2 1
6 6 H 1.07990 * 120.00068 * 0.02562 * 5 4 2
7 7 C 1.37877 * 119.99545 * 180.02562 * 5 4 2
8 8 N 1.31509 * 120.00296 * 0.02562 * 7 5 4
9 9 Si 1.86804 * 119.99644 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.46947 * 180.02562 * 9 7 5
11 11 H 1.48493 * 109.47217 * 300.00121 * 9 7 5
12 12 H 1.48500 * 109.47134 * 60.00210 * 9 7 5
13 13 O 1.42900 * 109.47119 * 120.00413 * 2 1 3
14 14 C 1.35908 * 116.99808 * 275.36152 * 13 2 1
15 15 C 1.38749 * 120.08994 * 185.35631 * 14 13 2
16 16 C 1.38003 * 119.87300 * 179.97438 * 15 14 13
17 17 C 1.38548 * 120.29188 * 0.02562 * 16 15 14
18 18 C 1.38257 * 119.93891 * 359.97438 * 17 16 15
19 19 C 1.38412 * 119.90401 * 359.74999 * 18 17 16
20 20 C 1.51378 * 109.75307 * 180.02562 * 18 17 16
21 21 H 1.09003 * 110.30223 * 223.88049 * 20 18 17
22 22 N 1.46897 * 110.30381 * 101.72938 * 20 18 17
23 23 C 1.54339 * 105.17454 * 342.80318 * 20 18 17
24 24 C 1.51391 * 130.32001 * 180.02562 * 17 16 15
25 25 H 1.08999 * 109.47191 * 179.97438 * 1 2 3
26 26 H 1.08997 * 109.47232 * 300.00438 * 1 2 3
27 27 H 1.09005 * 109.46745 * 59.99735 * 1 2 3
28 28 H 1.09004 * 109.46374 * 55.00507 * 4 2 1
29 29 H 1.08999 * 109.47406 * 295.00393 * 4 2 1
30 30 H 0.97004 * 120.00163 * 359.97438 * 8 7 5
31 31 H 1.07989 * 120.06546 * 359.97438 * 15 14 13
32 32 H 1.08001 * 119.85362 * 179.97438 * 16 15 14
33 33 H 1.07998 * 119.91236 * 180.25307 * 19 18 17
34 34 H 1.00902 * 110.99645 * 64.24736 * 22 20 18
35 35 H 1.00901 * 111.00084 * 188.20227 * 22 20 18
36 36 H 1.09005 * 110.81895 * 268.14412 * 23 20 18
37 37 H 1.08998 * 110.82030 * 144.59305 * 23 20 18
38 38 H 1.09003 * 110.30405 * 316.10440 * 24 17 16
39 39 H 1.09006 * 110.30189 * 78.25269 * 24 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5419 -0.6150 -1.3127
6 1 4.0789 -0.0863 -0.5392
7 6 4.2303 -1.1928 -2.3583
8 7 3.5762 -1.8362 -3.3004
9 14 6.0921 -1.0616 -2.4366
10 1 6.5869 -1.7606 -3.6498
11 1 6.4854 0.3691 -2.4951
12 1 6.6838 -1.6887 -1.2275
13 8 2.0063 -0.6737 1.1667
14 6 2.1052 0.0606 2.3060
15 6 2.6639 -0.4973 3.4470
16 6 2.7627 0.2526 4.6012
17 6 2.3059 1.5604 4.6262
18 6 1.7488 2.1185 3.4906
19 6 1.6536 1.3708 2.3297
20 6 1.3318 3.5459 3.7738
21 1 0.3451 3.7420 3.3542
22 7 2.3176 4.4842 3.2207
23 6 1.2912 3.6572 5.3126
24 6 2.3014 2.5751 5.7497
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5139 -0.8900
28 1 1.6054 -0.2617 -2.1369
29 1 1.7516 -1.7716 -1.2056
30 1 2.6095 -1.9047 -3.2596
31 1 3.0207 -1.5164 3.4318
32 1 3.1972 -0.1822 5.4893
33 1 1.2222 1.8079 1.4413
34 1 2.3528 4.4201 2.2144
35 1 2.1229 5.4291 3.5163
36 1 0.2941 3.4321 5.6911
37 1 1.6167 4.6451 5.6383
38 1 1.9770 2.1083 6.6797
39 1 3.2935 3.0105 5.8701
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000690728979.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:22:07
Heat of formation + Delta-G solvation = -30.280056 kcal
Electronic energy + Delta-G solvation = -19495.020498 eV
Core-core repulsion = 16594.771307 eV
Total energy + Delta-G solvation = -2900.249191 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.31452 -38.53124 -35.58745 -33.68187 -32.31388 -31.48719 -30.36096 -28.00370
-27.11952 -25.68166 -23.35441 -22.77749 -20.99758 -20.34863 -20.01349 -17.32020
-16.87828 -16.13458 -15.79471 -15.63149 -14.76512 -14.56244 -14.00599 -13.69106
-13.66744 -13.55168 -13.10393 -12.86646 -12.59120 -12.02638 -11.79209 -11.68169
-11.54810 -11.39588 -11.24610 -11.09798 -11.01712 -10.64196 -10.42987 -10.13562
-9.99862 -9.66661 -8.89768 -8.58237 -8.55118 -8.33207 -7.57408 -6.35227
-4.03506 1.55740 1.74850 3.46971 3.49546 3.67757 3.84815 3.99520
4.36104 4.48940 4.56865 4.62039 4.97378 5.08682 5.21862 5.33156
5.42760 5.49254 5.52333 5.61346 5.63097 5.67716 5.71231 5.80324
5.89978 6.00119 6.02874 6.17215 6.25948 6.44705 6.53329 6.59545
6.72929 6.85032 6.98664 7.03418 7.21540 7.29296 7.33758 8.08558
8.20230 8.47088 8.88238 9.66423 11.05550
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.023455 B = 0.004972 C = 0.004802
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.470466 B = 5630.226909 C = 5829.178868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.094 3.906
3 H 0.063 0.937
4 C 0.012 3.988
5 C -0.594 4.594
6 H 0.049 0.951
7 C 0.016 3.984
8 N -0.914 5.914
9 Si 1.068 2.932
10 H -0.282 1.282
11 H -0.288 1.288
12 H -0.287 1.287
13 O -0.290 6.290
14 C 0.149 3.851
15 C -0.155 4.155
16 C -0.072 4.072
17 C -0.137 4.137
18 C -0.056 4.056
19 C -0.195 4.195
20 C 0.130 3.870
21 H 0.041 0.959
22 N -0.837 5.837
23 C -0.115 4.115
24 C -0.066 4.066
25 H 0.062 0.938
26 H 0.049 0.951
27 H 0.066 0.934
28 H 0.027 0.973
29 H 0.019 0.981
30 H 0.267 0.733
31 H 0.130 0.870
32 H 0.121 0.879
33 H 0.124 0.876
34 H 0.346 0.654
35 H 0.340 0.660
36 H 0.073 0.927
37 H 0.076 0.924
38 H 0.066 0.934
39 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.128 10.450 16.163 20.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.039 3.961
3 H 0.081 0.919
4 C -0.025 4.025
5 C -0.632 4.632
6 H 0.068 0.932
7 C -0.187 4.187
8 N -0.550 5.550
9 Si 0.896 3.104
10 H -0.208 1.208
11 H -0.215 1.215
12 H -0.214 1.214
13 O -0.203 6.203
14 C 0.101 3.899
15 C -0.174 4.174
16 C -0.090 4.090
17 C -0.138 4.138
18 C -0.057 4.057
19 C -0.215 4.215
20 C 0.019 3.981
21 H 0.059 0.941
22 N -0.368 5.368
23 C -0.152 4.152
24 C -0.103 4.103
25 H 0.081 0.919
26 H 0.068 0.932
27 H 0.085 0.915
28 H 0.045 0.955
29 H 0.038 0.962
30 H 0.078 0.922
31 H 0.148 0.852
32 H 0.139 0.861
33 H 0.142 0.858
34 H 0.159 0.841
35 H 0.153 0.847
36 H 0.091 0.909
37 H 0.095 0.905
38 H 0.085 0.915
39 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -4.236 9.410 15.624 18.725
hybrid contribution -2.243 1.031 0.245 2.481
sum -6.479 10.441 15.870 20.071
Atomic orbital electron populations
1.22431 0.97100 1.02591 1.01469 1.22635 0.91548 0.96987 0.84957
0.91944 1.19373 0.97721 0.95829 0.89533 1.21935 0.91344 1.38701
1.11196 0.93216 1.25816 1.06939 0.93391 0.92601 1.70802 1.10216
1.39934 1.34080 0.83556 0.74388 0.76302 0.76145 1.20761 1.21461
1.21356 1.86276 1.80004 1.37949 1.16026 1.19016 0.93191 0.89979
0.87668 1.20358 1.04411 1.01328 0.91278 1.20312 0.98780 0.92727
0.97216 1.20288 1.02662 0.94571 0.96305 1.20047 0.98057 0.94230
0.93338 1.20738 1.07725 0.94430 0.98578 1.20719 0.92800 0.89432
0.95157 0.94092 1.58651 1.53064 1.09213 1.15882 1.22333 0.99512
0.99597 0.93808 1.20827 0.99703 0.93778 0.95954 0.91926 0.93153
0.91507 0.95459 0.96227 0.92250 0.85187 0.86062 0.85846 0.84111
0.84681 0.90883 0.90490 0.91498 0.90454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.09 9.17 37.15 0.34 -2.75 16
2 C 0.09 2.02 2.17 -26.73 -0.06 1.96 16
3 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16
4 C 0.01 0.31 4.00 -27.88 -0.11 0.20 16
5 C -0.59 -17.25 8.88 -34.44 -0.31 -17.55 16
6 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16
7 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16
8 N -0.91 -28.22 13.65 55.43 0.76 -27.46 16
9 Si 1.07 26.02 29.90 -169.99 -5.08 20.94 16
10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
13 O -0.29 -6.43 9.56 -19.45 -0.19 -6.62 16
14 C 0.15 2.85 6.59 -39.26 -0.26 2.59 16
15 C -0.15 -2.65 9.99 -39.48 -0.39 -3.05 16
16 C -0.07 -1.06 10.03 -39.55 -0.40 -1.45 16
17 C -0.14 -1.96 6.14 -104.16 -0.64 -2.60 16
18 C -0.06 -0.84 5.76 -104.22 -0.60 -1.44 16
19 C -0.20 -3.35 8.24 -39.38 -0.32 -3.67 16
20 C 0.13 1.51 3.99 -67.83 -0.27 1.24 16
21 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
22 N -0.84 -9.13 9.28 -4.77 -0.04 -9.17 16
23 C -0.11 -1.10 6.76 -25.32 -0.17 -1.28 16
24 C -0.07 -0.72 6.77 -26.84 -0.18 -0.90 16
25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
26 H 0.05 0.78 6.90 -51.93 -0.36 0.42 16
27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
28 H 0.03 0.71 8.01 -51.93 -0.42 0.29 16
29 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16
30 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16
31 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16
32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16
33 H 0.12 2.04 5.42 -52.49 -0.28 1.76 16
34 H 0.35 3.81 9.07 -39.29 -0.36 3.46 16
35 H 0.34 2.78 8.91 -39.29 -0.35 2.43 16
36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
37 H 0.08 0.62 7.97 -51.93 -0.41 0.21 16
38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 318.19 15.07 4.79 4.79
Total: -1.00 -32.43 318.19 -9.03 -41.46
By element:
Atomic # 1 Polarization: 10.17 SS G_CDS: -5.80 Total: 4.37 kcal
Atomic # 6 Polarization: -24.85 SS G_CDS: -3.47 Total: -28.32 kcal
Atomic # 7 Polarization: -37.34 SS G_CDS: 0.71 Total: -36.63 kcal
Atomic # 8 Polarization: -6.43 SS G_CDS: -0.19 Total: -6.62 kcal
Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -32.43 -9.03 -41.46 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000690728979.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.179 kcal
(2) G-P(sol) polarization free energy of solvation -32.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds