Wall clock time and date at job start Mon Mar 30 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47846 * 2 1 4 4 C 1.53006 * 109.47337 * 239.99677 * 2 1 3 5 5 C 1.50700 * 109.47242 * 175.00043 * 4 2 1 6 6 H 1.07990 * 120.00068 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99545 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00296 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99644 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46947 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47217 * 300.00121 * 9 7 5 12 12 H 1.48500 * 109.47134 * 60.00210 * 9 7 5 13 13 O 1.42900 * 109.47119 * 120.00413 * 2 1 3 14 14 C 1.35908 * 116.99808 * 275.36152 * 13 2 1 15 15 C 1.38749 * 120.08994 * 185.35631 * 14 13 2 16 16 C 1.38003 * 119.87300 * 179.97438 * 15 14 13 17 17 C 1.38548 * 120.29188 * 0.02562 * 16 15 14 18 18 C 1.38257 * 119.93891 * 359.97438 * 17 16 15 19 19 C 1.38412 * 119.90401 * 359.74999 * 18 17 16 20 20 C 1.51378 * 109.75307 * 180.02562 * 18 17 16 21 21 H 1.09003 * 110.30223 * 223.88049 * 20 18 17 22 22 N 1.46897 * 110.30381 * 101.72938 * 20 18 17 23 23 C 1.54339 * 105.17454 * 342.80318 * 20 18 17 24 24 C 1.51391 * 130.32001 * 180.02562 * 17 16 15 25 25 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47232 * 300.00438 * 1 2 3 27 27 H 1.09005 * 109.46745 * 59.99735 * 1 2 3 28 28 H 1.09004 * 109.46374 * 55.00507 * 4 2 1 29 29 H 1.08999 * 109.47406 * 295.00393 * 4 2 1 30 30 H 0.97004 * 120.00163 * 359.97438 * 8 7 5 31 31 H 1.07989 * 120.06546 * 359.97438 * 15 14 13 32 32 H 1.08001 * 119.85362 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.91236 * 180.25307 * 19 18 17 34 34 H 1.00902 * 110.99645 * 64.24736 * 22 20 18 35 35 H 1.00901 * 111.00084 * 188.20227 * 22 20 18 36 36 H 1.09005 * 110.81895 * 268.14412 * 23 20 18 37 37 H 1.08998 * 110.82030 * 144.59305 * 23 20 18 38 38 H 1.09003 * 110.30405 * 316.10440 * 24 17 16 39 39 H 1.09006 * 110.30189 * 78.25269 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8362 -3.3004 9 14 6.0921 -1.0616 -2.4366 10 1 6.5869 -1.7606 -3.6498 11 1 6.4854 0.3691 -2.4951 12 1 6.6838 -1.6887 -1.2275 13 8 2.0063 -0.6737 1.1667 14 6 2.1052 0.0606 2.3060 15 6 2.6639 -0.4973 3.4470 16 6 2.7627 0.2526 4.6012 17 6 2.3059 1.5604 4.6262 18 6 1.7488 2.1185 3.4906 19 6 1.6536 1.3708 2.3297 20 6 1.3318 3.5459 3.7738 21 1 0.3451 3.7420 3.3542 22 7 2.3176 4.4842 3.2207 23 6 1.2912 3.6572 5.3126 24 6 2.3014 2.5751 5.7497 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2617 -2.1369 29 1 1.7516 -1.7716 -1.2056 30 1 2.6095 -1.9047 -3.2596 31 1 3.0207 -1.5164 3.4318 32 1 3.1972 -0.1822 5.4893 33 1 1.2222 1.8079 1.4413 34 1 2.3528 4.4201 2.2144 35 1 2.1229 5.4291 3.5163 36 1 0.2941 3.4321 5.6911 37 1 1.6167 4.6451 5.6383 38 1 1.9770 2.1083 6.6797 39 1 3.2935 3.0105 5.8701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690728979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:07 Heat of formation + Delta-G solvation = -30.280056 kcal Electronic energy + Delta-G solvation = -19495.020498 eV Core-core repulsion = 16594.771307 eV Total energy + Delta-G solvation = -2900.249191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31452 -38.53124 -35.58745 -33.68187 -32.31388 -31.48719 -30.36096 -28.00370 -27.11952 -25.68166 -23.35441 -22.77749 -20.99758 -20.34863 -20.01349 -17.32020 -16.87828 -16.13458 -15.79471 -15.63149 -14.76512 -14.56244 -14.00599 -13.69106 -13.66744 -13.55168 -13.10393 -12.86646 -12.59120 -12.02638 -11.79209 -11.68169 -11.54810 -11.39588 -11.24610 -11.09798 -11.01712 -10.64196 -10.42987 -10.13562 -9.99862 -9.66661 -8.89768 -8.58237 -8.55118 -8.33207 -7.57408 -6.35227 -4.03506 1.55740 1.74850 3.46971 3.49546 3.67757 3.84815 3.99520 4.36104 4.48940 4.56865 4.62039 4.97378 5.08682 5.21862 5.33156 5.42760 5.49254 5.52333 5.61346 5.63097 5.67716 5.71231 5.80324 5.89978 6.00119 6.02874 6.17215 6.25948 6.44705 6.53329 6.59545 6.72929 6.85032 6.98664 7.03418 7.21540 7.29296 7.33758 8.08558 8.20230 8.47088 8.88238 9.66423 11.05550 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.004972 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.470466 B = 5630.226909 C = 5829.178868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.012 3.988 5 C -0.594 4.594 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 1.068 2.932 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.287 1.287 13 O -0.290 6.290 14 C 0.149 3.851 15 C -0.155 4.155 16 C -0.072 4.072 17 C -0.137 4.137 18 C -0.056 4.056 19 C -0.195 4.195 20 C 0.130 3.870 21 H 0.041 0.959 22 N -0.837 5.837 23 C -0.115 4.115 24 C -0.066 4.066 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.267 0.733 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.346 0.654 35 H 0.340 0.660 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 10.450 16.163 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.025 4.025 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.187 4.187 8 N -0.550 5.550 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.214 1.214 13 O -0.203 6.203 14 C 0.101 3.899 15 C -0.174 4.174 16 C -0.090 4.090 17 C -0.138 4.138 18 C -0.057 4.057 19 C -0.215 4.215 20 C 0.019 3.981 21 H 0.059 0.941 22 N -0.368 5.368 23 C -0.152 4.152 24 C -0.103 4.103 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.236 9.410 15.624 18.725 hybrid contribution -2.243 1.031 0.245 2.481 sum -6.479 10.441 15.870 20.071 Atomic orbital electron populations 1.22431 0.97100 1.02591 1.01469 1.22635 0.91548 0.96987 0.84957 0.91944 1.19373 0.97721 0.95829 0.89533 1.21935 0.91344 1.38701 1.11196 0.93216 1.25816 1.06939 0.93391 0.92601 1.70802 1.10216 1.39934 1.34080 0.83556 0.74388 0.76302 0.76145 1.20761 1.21461 1.21356 1.86276 1.80004 1.37949 1.16026 1.19016 0.93191 0.89979 0.87668 1.20358 1.04411 1.01328 0.91278 1.20312 0.98780 0.92727 0.97216 1.20288 1.02662 0.94571 0.96305 1.20047 0.98057 0.94230 0.93338 1.20738 1.07725 0.94430 0.98578 1.20719 0.92800 0.89432 0.95157 0.94092 1.58651 1.53064 1.09213 1.15882 1.22333 0.99512 0.99597 0.93808 1.20827 0.99703 0.93778 0.95954 0.91926 0.93153 0.91507 0.95459 0.96227 0.92250 0.85187 0.86062 0.85846 0.84111 0.84681 0.90883 0.90490 0.91498 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.17 37.15 0.34 -2.75 16 2 C 0.09 2.02 2.17 -26.73 -0.06 1.96 16 3 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16 4 C 0.01 0.31 4.00 -27.88 -0.11 0.20 16 5 C -0.59 -17.25 8.88 -34.44 -0.31 -17.55 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 8 N -0.91 -28.22 13.65 55.43 0.76 -27.46 16 9 Si 1.07 26.02 29.90 -169.99 -5.08 20.94 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 O -0.29 -6.43 9.56 -19.45 -0.19 -6.62 16 14 C 0.15 2.85 6.59 -39.26 -0.26 2.59 16 15 C -0.15 -2.65 9.99 -39.48 -0.39 -3.05 16 16 C -0.07 -1.06 10.03 -39.55 -0.40 -1.45 16 17 C -0.14 -1.96 6.14 -104.16 -0.64 -2.60 16 18 C -0.06 -0.84 5.76 -104.22 -0.60 -1.44 16 19 C -0.20 -3.35 8.24 -39.38 -0.32 -3.67 16 20 C 0.13 1.51 3.99 -67.83 -0.27 1.24 16 21 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 22 N -0.84 -9.13 9.28 -4.77 -0.04 -9.17 16 23 C -0.11 -1.10 6.76 -25.32 -0.17 -1.28 16 24 C -0.07 -0.72 6.77 -26.84 -0.18 -0.90 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.78 6.90 -51.93 -0.36 0.42 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.71 8.01 -51.93 -0.42 0.29 16 29 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16 30 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 31 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.12 2.04 5.42 -52.49 -0.28 1.76 16 34 H 0.35 3.81 9.07 -39.29 -0.36 3.46 16 35 H 0.34 2.78 8.91 -39.29 -0.35 2.43 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.62 7.97 -51.93 -0.41 0.21 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 318.19 15.07 4.79 4.79 Total: -1.00 -32.43 318.19 -9.03 -41.46 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.80 Total: 4.37 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -3.47 Total: -28.32 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.71 Total: -36.63 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.19 Total: -6.62 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.43 -9.03 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690728979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.179 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds