Wall clock time and date at job start Mon Mar 30 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47846 * 2 1 4 4 C 1.53006 * 109.47337 * 239.99677 * 2 1 3 5 5 C 1.50700 * 109.47242 * 175.00043 * 4 2 1 6 6 H 1.07990 * 120.00068 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99545 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00296 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99644 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46947 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47217 * 300.00121 * 9 7 5 12 12 H 1.48500 * 109.47134 * 60.00210 * 9 7 5 13 13 O 1.42900 * 109.47119 * 120.00413 * 2 1 3 14 14 C 1.35908 * 116.99808 * 275.36152 * 13 2 1 15 15 C 1.38749 * 120.08994 * 185.35631 * 14 13 2 16 16 C 1.38003 * 119.87300 * 179.97438 * 15 14 13 17 17 C 1.38548 * 120.29188 * 0.02562 * 16 15 14 18 18 C 1.38257 * 119.93891 * 359.97438 * 17 16 15 19 19 C 1.38412 * 119.90401 * 359.74999 * 18 17 16 20 20 C 1.51378 * 109.75307 * 180.02562 * 18 17 16 21 21 H 1.09003 * 110.30223 * 223.88049 * 20 18 17 22 22 N 1.46897 * 110.30381 * 101.72938 * 20 18 17 23 23 C 1.54339 * 105.17454 * 342.80318 * 20 18 17 24 24 C 1.51391 * 130.32001 * 180.02562 * 17 16 15 25 25 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47232 * 300.00438 * 1 2 3 27 27 H 1.09005 * 109.46745 * 59.99735 * 1 2 3 28 28 H 1.09004 * 109.46374 * 55.00507 * 4 2 1 29 29 H 1.08999 * 109.47406 * 295.00393 * 4 2 1 30 30 H 0.97004 * 120.00163 * 359.97438 * 8 7 5 31 31 H 1.07989 * 120.06546 * 359.97438 * 15 14 13 32 32 H 1.08001 * 119.85362 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.91236 * 180.25307 * 19 18 17 34 34 H 1.00902 * 110.99645 * 64.24736 * 22 20 18 35 35 H 1.00901 * 111.00084 * 188.20227 * 22 20 18 36 36 H 1.09005 * 110.81895 * 268.14412 * 23 20 18 37 37 H 1.08998 * 110.82030 * 144.59305 * 23 20 18 38 38 H 1.09003 * 110.30405 * 316.10440 * 24 17 16 39 39 H 1.09006 * 110.30189 * 78.25269 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8362 -3.3004 9 14 6.0921 -1.0616 -2.4366 10 1 6.5869 -1.7606 -3.6498 11 1 6.4854 0.3691 -2.4951 12 1 6.6838 -1.6887 -1.2275 13 8 2.0063 -0.6737 1.1667 14 6 2.1052 0.0606 2.3060 15 6 2.6639 -0.4973 3.4470 16 6 2.7627 0.2526 4.6012 17 6 2.3059 1.5604 4.6262 18 6 1.7488 2.1185 3.4906 19 6 1.6536 1.3708 2.3297 20 6 1.3318 3.5459 3.7738 21 1 0.3451 3.7420 3.3542 22 7 2.3176 4.4842 3.2207 23 6 1.2912 3.6572 5.3126 24 6 2.3014 2.5751 5.7497 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2617 -2.1369 29 1 1.7516 -1.7716 -1.2056 30 1 2.6095 -1.9047 -3.2596 31 1 3.0207 -1.5164 3.4318 32 1 3.1972 -0.1822 5.4893 33 1 1.2222 1.8079 1.4413 34 1 2.3528 4.4201 2.2144 35 1 2.1229 5.4291 3.5163 36 1 0.2941 3.4321 5.6911 37 1 1.6167 4.6451 5.6383 38 1 1.9770 2.1083 6.6797 39 1 3.2935 3.0105 5.8701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690728979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:07 Heat of formation + Delta-G solvation = -50.949194 kcal Electronic energy + Delta-G solvation = -19495.916779 eV Core-core repulsion = 16594.771307 eV Total energy + Delta-G solvation = -2901.145472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55299 -39.87751 -36.82765 -35.64326 -33.53192 -33.03932 -31.54924 -29.16275 -29.00109 -26.67281 -25.25276 -24.26380 -22.28188 -21.51049 -21.35906 -19.05708 -18.71132 -17.23352 -16.90660 -16.62680 -16.21950 -15.78185 -15.71406 -15.28628 -14.95928 -14.83792 -14.46020 -14.39956 -14.07918 -13.48901 -13.24548 -13.16666 -12.92959 -12.66627 -12.55760 -12.37581 -12.31710 -12.09569 -11.97974 -11.76513 -11.48419 -11.39953 -10.69919 -10.59302 -9.94045 -9.59500 -8.88803 -8.72028 -6.40970 0.33823 0.49040 1.48716 1.56978 1.77158 2.36996 2.52924 2.75261 3.13587 3.39383 3.56085 3.77507 3.84907 3.98947 4.07368 4.12122 4.18832 4.25448 4.34988 4.43521 4.57969 4.65444 4.70495 4.81406 4.86704 4.94289 4.96710 5.01332 5.12101 5.17310 5.23071 5.27043 5.39125 5.44484 5.68727 5.89298 5.94238 6.12388 6.15654 6.50982 6.57172 6.65298 7.37154 8.69506 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.004972 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.470466 B = 5630.226909 C = 5829.178868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 H 0.060 0.940 4 C 0.012 3.988 5 C -0.607 4.607 6 H 0.039 0.961 7 C -0.035 4.035 8 N -0.935 5.935 9 Si 1.113 2.887 10 H -0.278 1.278 11 H -0.268 1.268 12 H -0.276 1.276 13 O -0.323 6.323 14 C 0.110 3.890 15 C -0.172 4.172 16 C -0.070 4.070 17 C -0.136 4.136 18 C -0.065 4.065 19 C -0.203 4.203 20 C 0.128 3.872 21 H 0.048 0.952 22 N -0.844 5.844 23 C -0.108 4.108 24 C -0.065 4.065 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.022 0.978 29 H -0.005 1.005 30 H 0.256 0.744 31 H 0.128 0.872 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.343 0.657 35 H 0.357 0.643 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 12.470 18.588 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.078 0.922 4 C -0.024 4.024 5 C -0.645 4.645 6 H 0.057 0.943 7 C -0.232 4.232 8 N -0.573 5.573 9 Si 0.935 3.065 10 H -0.203 1.203 11 H -0.193 1.193 12 H -0.201 1.201 13 O -0.237 6.237 14 C 0.064 3.936 15 C -0.191 4.191 16 C -0.088 4.088 17 C -0.137 4.137 18 C -0.066 4.066 19 C -0.222 4.222 20 C 0.017 3.983 21 H 0.066 0.934 22 N -0.377 5.377 23 C -0.145 4.145 24 C -0.102 4.102 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.013 0.987 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.055 11.458 18.077 21.783 hybrid contribution -2.317 0.441 -0.400 2.392 sum -6.372 11.898 17.677 22.240 Atomic orbital electron populations 1.22310 0.93980 1.02896 1.03176 1.22368 0.93886 0.95683 0.83445 0.92226 1.19277 0.96357 0.94861 0.91955 1.22256 0.93134 1.38328 1.10794 0.94252 1.27317 1.11242 0.92515 0.92122 1.70922 1.09736 1.41495 1.35121 0.82984 0.69322 0.77566 0.76664 1.20272 1.19316 1.20115 1.86175 1.81287 1.39208 1.17000 1.19343 0.95840 0.91176 0.87240 1.20572 1.04891 1.01796 0.91817 1.20654 0.98036 0.92933 0.97197 1.20858 1.00700 0.94791 0.97376 1.20522 0.97364 0.96045 0.92656 1.20792 1.07963 0.93895 0.99591 1.20813 0.93081 0.87489 0.96900 0.93378 1.58631 1.52973 1.10277 1.15782 1.22386 1.00056 1.00268 0.91803 1.20936 1.00483 0.93205 0.95527 0.92312 0.91170 0.89946 0.96031 0.98652 0.93424 0.85450 0.82956 0.86029 0.84476 0.82808 0.89416 0.88418 0.89213 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.80 9.17 71.98 0.66 -5.14 16 2 C 0.10 4.51 2.17 30.59 0.07 4.57 16 3 H 0.06 2.61 6.31 -2.39 -0.02 2.60 16 4 C 0.01 0.67 4.00 29.85 0.12 0.79 16 5 C -0.61 -36.38 8.88 25.60 0.23 -36.16 16 6 H 0.04 2.38 7.74 -2.92 -0.02 2.36 16 7 C -0.03 -2.07 5.46 84.66 0.46 -1.61 16 8 N -0.94 -59.14 13.65 21.45 0.29 -58.85 16 9 Si 1.11 52.57 29.90 68.60 2.05 54.62 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 O -0.32 -14.93 9.56 -92.52 -0.88 -15.82 16 14 C 0.11 4.31 6.59 22.48 0.15 4.46 16 15 C -0.17 -5.94 9.99 22.34 0.22 -5.72 16 16 C -0.07 -1.94 10.03 22.29 0.22 -1.72 16 17 C -0.14 -3.55 6.14 -19.57 -0.12 -3.67 16 18 C -0.07 -1.84 5.76 -19.60 -0.11 -1.96 16 19 C -0.20 -6.95 8.24 22.40 0.18 -6.76 16 20 C 0.13 2.63 3.99 44.84 0.18 2.81 16 21 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 22 N -0.84 -16.33 9.28 -169.00 -1.57 -17.90 16 23 C -0.11 -1.62 6.76 31.51 0.21 -1.40 16 24 C -0.06 -1.16 6.77 30.52 0.21 -0.95 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.07 2.15 6.90 -2.39 -0.02 2.13 16 27 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.02 1.17 8.01 -2.39 -0.02 1.15 16 29 H 0.00 -0.28 8.01 -2.39 -0.02 -0.30 16 30 H 0.26 16.27 7.22 -92.71 -0.67 15.60 16 31 H 0.13 4.28 8.06 -2.92 -0.02 4.26 16 32 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.12 4.06 5.42 -2.91 -0.02 4.04 16 34 H 0.34 7.04 9.07 -89.69 -0.81 6.23 16 35 H 0.36 4.76 8.91 -89.69 -0.80 3.96 16 36 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.10 1.11 7.97 -2.39 -0.02 1.09 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -71.85 318.19 2.12 -69.73 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.45 Total: 20.67 kcal Atomic # 6 Polarization: -55.13 SS G_CDS: 2.68 Total: -52.45 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.28 Total: -76.74 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.88 Total: -15.82 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 2.05 Total: 54.62 kcal Total: -71.85 2.12 -69.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690728979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.781 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds