Wall clock time and date at job start Mon Mar 30 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00193 * 2 1 4 4 H 1.09001 * 110.26809 * 35.62195 * 3 2 1 5 5 C 1.54337 * 110.30742 * 157.80426 * 3 2 1 6 6 C 1.54341 * 102.39837 * 92.54942 * 5 3 2 7 7 C 1.51396 * 105.17330 * 26.37714 * 6 5 3 8 8 C 1.38541 * 130.32260 * 162.77522 * 7 6 5 9 9 C 1.38010 * 120.28766 * 179.97438 * 8 7 6 10 10 C 1.38744 * 119.88026 * 0.02562 * 9 8 7 11 11 O 1.35898 * 120.09182 * 179.97438 * 10 9 8 12 12 C 1.42902 * 117.00159 * 0.02562 * 11 10 9 13 13 C 1.53004 * 109.46994 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46637 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47093 * 60.00328 * 18 16 14 20 20 H 1.48495 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47239 * 300.00048 * 18 16 14 22 22 C 1.38598 * 119.81574 * 0.25139 * 10 9 8 23 23 C 1.38258 * 109.73695 * 342.79475 * 7 6 5 24 24 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46767 * 299.99565 * 1 2 3 26 26 H 1.09002 * 109.47275 * 59.99679 * 1 2 3 27 27 H 1.00903 * 111.00315 * 123.95483 * 2 1 3 28 28 H 1.08996 * 110.82345 * 210.78003 * 5 3 2 29 29 H 1.09004 * 110.81612 * 334.12868 * 5 3 2 30 30 H 1.09002 * 110.30576 * 267.45259 * 6 5 3 31 31 H 1.08998 * 110.30042 * 145.29831 * 6 5 3 32 32 H 1.07996 * 119.85613 * 0.02575 * 8 7 6 33 33 H 1.07998 * 120.05519 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.46759 * 60.00039 * 12 11 10 35 35 H 1.08997 * 109.46947 * 299.99525 * 12 11 10 36 36 H 1.08992 * 109.47421 * 60.00152 * 13 12 11 37 37 H 1.08997 * 109.46955 * 299.99605 * 13 12 11 38 38 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 39 39 H 1.08002 * 119.91435 * 179.72322 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3548 2.0218 0.5956 5 6 3.4386 1.3911 0.5468 6 6 4.2820 1.2579 -0.7389 7 6 3.4158 1.8281 -1.8419 8 6 3.7526 2.2560 -3.1158 9 6 2.7815 2.7468 -3.9647 10 6 1.4620 2.8128 -3.5409 11 8 0.5024 3.2958 -4.3731 12 6 0.9226 3.7182 -5.6720 13 6 -0.2869 4.2266 -6.4591 14 6 0.1562 4.6714 -7.8290 15 1 1.1957 4.5947 -8.1118 16 6 -0.7665 5.1706 -8.7237 17 7 -2.0333 5.2590 -8.3814 18 14 -0.2171 5.7227 -10.4216 19 1 0.3959 4.5770 -11.1404 20 1 -1.3911 6.2160 -11.1856 21 1 0.7805 6.8146 -10.2884 22 6 1.1263 2.3900 -2.2644 23 6 2.1017 1.8933 -1.4171 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8306 -0.5261 0.7814 28 1 3.6487 2.3338 1.0520 29 1 3.6109 0.5480 1.2159 30 1 4.5059 0.2098 -0.9375 31 1 5.2042 1.8317 -0.6474 32 1 4.7795 2.2044 -3.4463 33 1 3.0483 3.0790 -4.9572 34 1 1.3718 2.8770 -6.1999 35 1 1.6555 4.5190 -5.5741 36 1 -0.7365 5.0676 -5.9314 37 1 -1.0195 3.4255 -6.5569 38 1 -2.6823 5.6106 -9.0107 39 1 0.1004 2.4448 -1.9312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690747077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:19 Heat of formation + Delta-G solvation = -23.675233 kcal Electronic energy + Delta-G solvation = -18847.522437 eV Core-core repulsion = 15947.559653 eV Total energy + Delta-G solvation = -2899.962785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33731 -38.49564 -35.87348 -33.72539 -33.15619 -31.02684 -30.03170 -28.24566 -26.92972 -24.98694 -24.09871 -22.79560 -21.27626 -20.79657 -19.85986 -17.42186 -16.18105 -16.02763 -15.89793 -15.40030 -15.21572 -14.97662 -14.59838 -14.43387 -13.66521 -13.49969 -13.06408 -12.62658 -12.46235 -12.30828 -12.04913 -11.97861 -11.74290 -11.41701 -11.12637 -11.07065 -11.01957 -10.69942 -10.69402 -10.35473 -9.76981 -9.64131 -9.29948 -8.75872 -8.55144 -8.43189 -7.64566 -6.09123 -4.13805 1.52744 1.71443 3.29663 3.33864 3.35700 3.76052 3.87214 4.21819 4.40489 4.41504 4.55626 4.90613 5.04294 5.13715 5.23702 5.26253 5.27157 5.38283 5.45895 5.56098 5.59154 5.62088 5.79241 5.83583 5.91637 5.96795 6.06468 6.11290 6.31886 6.51118 6.60477 6.75738 6.77401 6.84079 7.00054 7.18356 7.52520 7.65834 7.83373 8.10007 8.25455 8.91596 9.50362 11.02453 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.003546 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.257141 B = 7894.861670 C = 8476.684490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.681 5.681 3 C 0.125 3.875 4 H 0.053 0.947 5 C -0.121 4.121 6 C -0.067 4.067 7 C -0.139 4.139 8 C -0.069 4.069 9 C -0.207 4.207 10 C 0.144 3.856 11 O -0.316 6.316 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.142 4.142 23 C -0.048 4.048 24 H 0.068 0.932 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.341 0.659 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -8.790 18.268 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.312 5.312 3 C 0.016 3.984 4 H 0.071 0.929 5 C -0.158 4.158 6 C -0.104 4.104 7 C -0.140 4.140 8 C -0.087 4.087 9 C -0.226 4.226 10 C 0.097 3.903 11 O -0.230 6.230 12 C -0.008 4.008 13 C -0.011 4.011 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.161 4.161 23 C -0.049 4.049 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.093 -8.779 17.548 22.065 hybrid contribution 0.117 0.615 -0.340 0.712 sum 10.210 -8.165 17.208 21.611 Atomic orbital electron populations 1.22287 0.87398 1.01966 1.00810 1.60292 1.08073 1.13085 1.49789 1.20935 0.95781 0.89276 0.92398 0.92900 1.22459 0.93677 1.02333 0.97366 1.20832 0.97142 1.00807 0.91588 1.20274 0.95072 1.03378 0.95279 1.20322 0.98762 0.97366 0.92290 1.21255 0.92546 1.07223 1.01561 1.18963 0.88090 0.92792 0.90413 1.86157 1.34245 1.75923 1.26633 1.23321 1.01288 0.97503 0.78723 1.19115 0.91594 0.97097 0.93340 1.20945 0.94636 1.43138 0.97830 0.92403 1.24991 0.94812 0.95521 0.98838 1.69968 1.01466 1.45370 1.35992 0.86543 0.78098 0.79102 0.83603 1.20077 1.21121 1.20087 1.19754 0.99525 1.04967 0.91900 1.19971 0.93211 0.96720 0.94995 0.91369 0.96010 0.91120 0.84048 0.90470 0.90491 0.90480 0.91341 0.86416 0.85073 0.93149 0.93157 0.95417 0.95422 0.92655 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.53 60.06 0.63 0.87 16 2 N -0.68 -6.87 6.68 -114.13 -0.76 -7.64 16 3 C 0.13 1.34 3.19 -67.83 -0.22 1.13 16 4 H 0.05 0.55 7.86 -51.93 -0.41 0.15 16 5 C -0.12 -1.01 6.74 -25.33 -0.17 -1.18 16 6 C -0.07 -0.66 6.77 -26.84 -0.18 -0.84 16 7 C -0.14 -1.87 6.14 -104.16 -0.64 -2.51 16 8 C -0.07 -0.98 10.03 -39.55 -0.40 -1.38 16 9 C -0.21 -3.42 9.04 -39.48 -0.36 -3.78 16 10 C 0.14 2.66 6.68 -39.26 -0.26 2.39 16 11 O -0.32 -6.76 10.14 -19.42 -0.20 -6.96 16 12 C 0.07 1.45 4.68 37.16 0.17 1.62 16 13 C 0.03 0.68 5.34 -27.88 -0.15 0.54 16 14 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.14 -2.33 9.51 -39.38 -0.37 -2.71 16 23 C -0.05 -0.68 5.65 -104.21 -0.59 -1.27 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.18 8.07 -51.93 -0.42 -0.24 16 26 H 0.07 0.81 7.11 -51.93 -0.37 0.44 16 27 H 0.34 2.60 8.18 -39.29 -0.32 2.28 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.49 7.58 -51.93 -0.39 0.10 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 2.11 6.31 -52.49 -0.33 1.77 16 34 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 35 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 1.89 7.58 -52.49 -0.40 1.50 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -31.05 320.81 -9.29 -40.33 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.94 Total: -0.35 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -2.94 Total: -20.66 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.03 Total: -33.59 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.20 Total: -6.96 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.05 -9.29 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690747077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.659 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds