Wall clock time and date at job start Mon Mar 30 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00193 * 2 1 4 4 H 1.09001 * 110.26809 * 35.62195 * 3 2 1 5 5 C 1.54337 * 110.30742 * 157.80426 * 3 2 1 6 6 C 1.54341 * 102.39837 * 92.54942 * 5 3 2 7 7 C 1.51396 * 105.17330 * 26.37714 * 6 5 3 8 8 C 1.38541 * 130.32260 * 162.77522 * 7 6 5 9 9 C 1.38010 * 120.28766 * 179.97438 * 8 7 6 10 10 C 1.38744 * 119.88026 * 0.02562 * 9 8 7 11 11 O 1.35898 * 120.09182 * 179.97438 * 10 9 8 12 12 C 1.42902 * 117.00159 * 0.02562 * 11 10 9 13 13 C 1.53004 * 109.46994 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46637 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47093 * 60.00328 * 18 16 14 20 20 H 1.48495 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47239 * 300.00048 * 18 16 14 22 22 C 1.38598 * 119.81574 * 0.25139 * 10 9 8 23 23 C 1.38258 * 109.73695 * 342.79475 * 7 6 5 24 24 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46767 * 299.99565 * 1 2 3 26 26 H 1.09002 * 109.47275 * 59.99679 * 1 2 3 27 27 H 1.00903 * 111.00315 * 123.95483 * 2 1 3 28 28 H 1.08996 * 110.82345 * 210.78003 * 5 3 2 29 29 H 1.09004 * 110.81612 * 334.12868 * 5 3 2 30 30 H 1.09002 * 110.30576 * 267.45259 * 6 5 3 31 31 H 1.08998 * 110.30042 * 145.29831 * 6 5 3 32 32 H 1.07996 * 119.85613 * 0.02575 * 8 7 6 33 33 H 1.07998 * 120.05519 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.46759 * 60.00039 * 12 11 10 35 35 H 1.08997 * 109.46947 * 299.99525 * 12 11 10 36 36 H 1.08992 * 109.47421 * 60.00152 * 13 12 11 37 37 H 1.08997 * 109.46955 * 299.99605 * 13 12 11 38 38 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 39 39 H 1.08002 * 119.91435 * 179.72322 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3548 2.0218 0.5956 5 6 3.4386 1.3911 0.5468 6 6 4.2820 1.2579 -0.7389 7 6 3.4158 1.8281 -1.8419 8 6 3.7526 2.2560 -3.1158 9 6 2.7815 2.7468 -3.9647 10 6 1.4620 2.8128 -3.5409 11 8 0.5024 3.2958 -4.3731 12 6 0.9226 3.7182 -5.6720 13 6 -0.2869 4.2266 -6.4591 14 6 0.1562 4.6714 -7.8290 15 1 1.1957 4.5947 -8.1118 16 6 -0.7665 5.1706 -8.7237 17 7 -2.0333 5.2590 -8.3814 18 14 -0.2171 5.7227 -10.4216 19 1 0.3959 4.5770 -11.1404 20 1 -1.3911 6.2160 -11.1856 21 1 0.7805 6.8146 -10.2884 22 6 1.1263 2.3900 -2.2644 23 6 2.1017 1.8933 -1.4171 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8306 -0.5261 0.7814 28 1 3.6487 2.3338 1.0520 29 1 3.6109 0.5480 1.2159 30 1 4.5059 0.2098 -0.9375 31 1 5.2042 1.8317 -0.6474 32 1 4.7795 2.2044 -3.4463 33 1 3.0483 3.0790 -4.9572 34 1 1.3718 2.8770 -6.1999 35 1 1.6555 4.5190 -5.5741 36 1 -0.7365 5.0676 -5.9314 37 1 -1.0195 3.4255 -6.5569 38 1 -2.6823 5.6106 -9.0107 39 1 0.1004 2.4448 -1.9312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690747077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:19 Heat of formation + Delta-G solvation = -43.111080 kcal Electronic energy + Delta-G solvation = -18848.365239 eV Core-core repulsion = 15947.559653 eV Total energy + Delta-G solvation = -2900.805586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48331 -39.82442 -36.96901 -35.50510 -34.41799 -32.52379 -31.67366 -29.31930 -27.99174 -26.78596 -25.07283 -24.01839 -22.99017 -21.72103 -21.20039 -19.02262 -18.04447 -17.17096 -17.00927 -16.73358 -16.55313 -16.21048 -16.05911 -15.69442 -14.55671 -14.46033 -14.34635 -14.27792 -14.19157 -13.74080 -13.09560 -13.05940 -12.85401 -12.79850 -12.67410 -12.49291 -12.33640 -12.02962 -11.80002 -11.74211 -11.56341 -11.39724 -11.38536 -10.62695 -9.86566 -9.41063 -8.92491 -8.27783 -6.42046 0.34722 0.49285 1.40152 1.44538 1.52523 2.24128 2.48064 2.72501 3.06423 3.37337 3.57831 3.63017 3.93279 4.06420 4.19435 4.24384 4.24741 4.36744 4.45082 4.47512 4.53620 4.58253 4.70379 4.71725 4.84024 4.98793 5.02338 5.05848 5.23822 5.26370 5.30558 5.37254 5.44154 5.46945 5.66441 5.69946 5.88661 5.97827 6.05956 6.54518 6.55516 6.72365 7.28172 8.85298 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.003546 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.257141 B = 7894.861670 C = 8476.684490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.689 5.689 3 C 0.124 3.876 4 H 0.054 0.946 5 C -0.112 4.112 6 C -0.065 4.065 7 C -0.135 4.135 8 C -0.072 4.072 9 C -0.217 4.217 10 C 0.104 3.896 11 O -0.343 6.343 12 C 0.085 3.915 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.071 0.929 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.155 4.155 23 C -0.056 4.056 24 H 0.080 0.920 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.358 0.642 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.059 0.941 35 H 0.060 0.940 36 H -0.002 1.002 37 H -0.003 1.003 38 H 0.267 0.733 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.316 -9.647 19.354 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.322 5.322 3 C 0.015 3.985 4 H 0.072 0.928 5 C -0.149 4.149 6 C -0.102 4.102 7 C -0.136 4.136 8 C -0.089 4.089 9 C -0.236 4.236 10 C 0.059 3.941 11 O -0.257 6.257 12 C 0.011 3.989 13 C -0.008 4.008 14 C -0.586 4.586 15 H 0.089 0.911 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.174 4.174 23 C -0.057 4.057 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.179 0.821 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.977 -9.657 18.669 24.702 hybrid contribution -0.767 0.803 -0.527 1.229 sum 12.210 -8.854 18.142 23.593 Atomic orbital electron populations 1.22251 0.87512 1.02530 1.00091 1.60193 1.08172 1.12934 1.50948 1.21010 0.97808 0.89537 0.90179 0.92784 1.22510 0.91032 1.04279 0.97098 1.20956 0.97422 1.01323 0.90508 1.20872 0.95592 1.01388 0.95702 1.20667 0.99583 0.96354 0.92339 1.21365 0.92242 1.07812 1.02147 1.19275 0.88555 0.95331 0.90947 1.86066 1.35920 1.77226 1.26535 1.22863 0.98854 0.97967 0.79229 1.18956 0.92777 0.95060 0.94015 1.21376 0.95466 1.43320 0.98481 0.91063 1.26067 0.94699 0.95277 1.03643 1.70119 1.02929 1.46213 1.37791 0.85314 0.77892 0.79092 0.77629 1.18791 1.20698 1.18755 1.19910 1.00126 1.05591 0.91814 1.20463 0.93043 0.95690 0.96493 0.90174 0.94757 0.93796 0.82066 0.89291 0.87687 0.89500 0.89247 0.83436 0.85145 0.92324 0.92160 0.98356 0.98460 0.92393 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.53 127.69 1.34 1.81 16 2 N -0.69 -12.38 6.68 -515.00 -3.44 -15.82 16 3 C 0.12 2.38 3.19 44.84 0.14 2.53 16 4 H 0.05 1.03 7.86 -2.39 -0.02 1.02 16 5 C -0.11 -1.41 6.74 31.50 0.21 -1.20 16 6 C -0.07 -1.02 6.77 30.52 0.21 -0.81 16 7 C -0.13 -3.31 6.14 -19.57 -0.12 -3.43 16 8 C -0.07 -1.90 10.03 22.29 0.22 -1.68 16 9 C -0.22 -7.20 9.04 22.34 0.20 -7.00 16 10 C 0.10 4.00 6.68 22.48 0.15 4.15 16 11 O -0.34 -15.61 10.14 -92.40 -0.94 -16.55 16 12 C 0.09 3.93 4.68 71.98 0.34 4.26 16 13 C 0.03 1.65 5.34 29.85 0.16 1.81 16 14 C -0.55 -31.67 9.11 25.60 0.23 -31.43 16 15 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 16 C 0.00 0.10 5.46 84.66 0.46 0.56 16 17 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 18 Si 0.98 44.00 29.54 68.60 2.03 46.03 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 C -0.16 -5.28 9.51 22.40 0.21 -5.07 16 23 C -0.06 -1.53 5.65 -19.60 -0.11 -1.64 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.03 0.53 8.07 -2.39 -0.02 0.52 16 26 H 0.04 1.04 7.11 -2.39 -0.02 1.02 16 27 H 0.36 4.28 8.18 -89.69 -0.73 3.55 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.79 7.58 -2.38 -0.02 0.77 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.13 4.22 6.31 -2.91 -0.02 4.20 16 34 H 0.06 2.55 7.67 -2.39 -0.02 2.54 16 35 H 0.06 2.61 7.66 -2.39 -0.02 2.59 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.20 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.11 3.87 7.58 -2.91 -0.02 3.85 16 Total: -1.00 -69.88 320.81 1.89 -67.98 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.30 Total: 12.78 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.66 Total: -37.14 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -3.16 Total: -73.11 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.94 Total: -16.55 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.88 1.89 -67.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690747077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.873 kcal (2) G-P(sol) polarization free energy of solvation -69.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds