Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38760 * 120.05834 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94818 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.10263 * 359.97438 * 5 4 3 7 7 C 1.38485 * 120.05520 * 0.02562 * 6 5 4 8 8 C 1.38096 * 120.02349 * 359.74207 * 7 6 5 9 9 C 1.51192 * 108.25137 * 180.02562 * 7 6 5 10 10 N 1.48052 * 105.67162 * 342.48350 * 9 7 6 11 11 C 1.46905 * 110.99908 * 268.26039 * 10 9 7 12 12 C 1.53003 * 109.46849 * 184.88516 * 11 10 9 13 13 C 1.52997 * 109.46635 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46884 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99725 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00044 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00255 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00248 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46955 * 90.00045 * 18 16 14 20 20 H 1.48488 * 109.47714 * 210.00163 * 18 16 14 21 21 H 1.48499 * 109.47017 * 330.00691 * 18 16 14 22 22 C 1.48051 * 103.89340 * 27.62465 * 10 9 7 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 26 26 H 1.07997 * 120.02474 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.95079 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.00443 * 180.25458 * 8 7 6 29 29 H 1.09001 * 110.20791 * 223.43448 * 9 7 6 30 30 H 1.08995 * 110.21369 * 101.53153 * 9 7 6 31 31 H 1.08998 * 109.46999 * 304.88791 * 11 10 9 32 32 H 1.09001 * 109.46936 * 64.89278 * 11 10 9 33 33 H 1.08998 * 109.47544 * 299.99941 * 12 11 10 34 34 H 1.09001 * 109.46730 * 60.00635 * 12 11 10 35 35 H 1.08996 * 109.47600 * 299.99737 * 13 12 11 36 36 H 1.08993 * 109.47398 * 60.00503 * 13 12 11 37 37 H 0.96999 * 120.00462 * 180.02562 * 17 16 14 38 38 H 1.08993 * 110.20763 * 213.32200 * 22 10 9 39 39 H 1.09000 * 110.20081 * 91.42512 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3754 -0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3013 3.6769 0.0016 7 6 4.0565 2.5161 0.0021 8 6 3.4311 1.2849 0.0065 9 6 5.5183 2.9022 0.0046 10 7 5.5585 4.3189 -0.4237 11 6 5.7216 4.4243 -1.8798 12 6 5.8808 5.8951 -2.2700 13 6 6.0501 6.0049 -3.7866 14 6 6.2075 7.4536 -4.1710 15 1 6.1891 8.2193 -3.4095 16 6 6.3750 7.8014 -5.4945 17 7 6.5129 9.0655 -5.8299 18 14 6.4075 6.4769 -6.8115 19 1 5.0282 6.2375 -7.3068 20 1 7.2679 6.9196 -7.9378 21 1 6.9520 5.2206 -6.2366 22 6 4.2470 4.8567 0.0036 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2129 2.3204 -0.0014 27 1 1.3337 4.5111 0.0000 28 1 4.0204 0.3798 0.0110 29 1 6.0731 2.2806 -0.6982 30 1 5.9331 2.8002 1.0073 31 1 6.6076 3.8688 -2.1873 32 1 4.8431 4.0102 -2.3747 33 1 4.9948 6.4506 -1.9625 34 1 6.7593 6.3092 -1.7751 35 1 6.9359 5.4494 -4.0946 36 1 5.1714 5.5909 -4.2812 37 1 6.6304 9.3103 -6.7611 38 1 3.9040 5.6154 -0.6998 39 1 4.3214 5.2780 1.0061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692906319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = -6.617914 kcal Electronic energy + Delta-G solvation = -18907.279444 eV Core-core repulsion = 16008.056320 eV Total energy + Delta-G solvation = -2899.223124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81470 -39.19625 -36.32419 -33.90441 -32.00267 -31.55597 -29.80906 -28.38472 -27.11399 -26.44559 -23.96154 -22.17818 -21.16293 -20.96936 -19.82051 -17.92972 -16.77271 -16.48266 -16.01058 -15.80956 -15.40197 -15.04815 -14.27599 -14.12059 -13.79687 -13.58270 -13.47987 -13.04876 -12.62239 -12.38700 -12.23360 -12.01854 -11.76643 -11.64195 -11.60370 -10.97083 -10.91733 -10.81533 -10.65891 -9.94048 -9.68755 -9.57601 -9.14770 -8.96398 -8.53510 -8.50848 -8.16055 -6.01391 -3.98999 1.14925 1.27261 2.97892 3.32554 3.39893 3.44061 3.55979 4.08338 4.38773 4.47857 4.63792 4.70421 4.82744 4.84441 5.01900 5.14484 5.17868 5.30224 5.32560 5.43285 5.49130 5.68849 5.71468 5.82733 5.89351 5.95346 6.06203 6.17121 6.18638 6.41813 6.52179 6.55530 6.59059 6.85862 7.02611 7.17414 7.18363 7.38060 7.48210 7.83048 8.57891 9.04238 9.61412 11.12194 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026312 B = 0.003897 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.914422 B = 7183.064216 C = 7557.751884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.208 4.208 5 C -0.060 4.060 6 C -0.154 4.154 7 C -0.085 4.085 8 C -0.133 4.133 9 C 0.076 3.924 10 N -0.499 5.499 11 C 0.039 3.961 12 C -0.096 4.096 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.076 3.924 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.016 0.984 36 H 0.008 0.992 37 H 0.262 0.738 38 H 0.089 0.911 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.842 -17.449 13.962 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.078 3.922 4 C -0.226 4.226 5 C -0.079 4.079 6 C -0.155 4.155 7 C -0.087 4.087 8 C -0.152 4.152 9 C -0.053 4.053 10 N -0.219 5.219 11 C -0.088 4.088 12 C -0.134 4.134 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.052 4.052 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.233 -17.206 14.026 24.444 hybrid contribution -1.100 -0.948 -1.261 1.923 sum -11.333 -18.153 12.766 24.919 Atomic orbital electron populations 1.23046 0.78409 1.03836 1.01403 1.86045 1.21343 1.26924 1.88927 1.18833 0.92050 0.84114 0.97181 1.21124 0.99859 0.92110 1.09541 1.20294 0.93015 0.97197 0.97363 1.21218 0.94176 0.96869 1.03261 1.21042 0.97624 0.92627 0.97404 1.19612 0.91128 0.97477 1.06989 1.21829 0.90790 0.90187 1.02459 1.65240 1.29170 1.12155 1.15368 1.22587 1.00400 1.00180 0.85682 1.21464 1.01567 0.92015 0.98360 1.19550 0.96062 0.97901 0.91595 1.21148 1.49425 0.91325 0.93675 0.90986 1.25036 0.94681 0.95192 0.98657 1.69917 1.50490 1.16212 1.17805 0.86778 0.78211 0.82798 0.81501 1.20398 1.21395 1.19016 1.21801 0.86056 0.94923 1.02460 0.88298 0.92675 0.92614 0.85358 0.85625 0.85341 0.89990 0.88431 0.90851 0.94842 0.92852 0.91809 0.96605 0.97330 0.92789 0.89248 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.50 10.50 -19.41 -0.20 -3.71 16 3 C 0.12 1.49 6.69 -39.21 -0.26 1.22 16 4 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16 5 C -0.06 -0.72 10.04 -39.63 -0.40 -1.11 16 6 C -0.15 -2.04 6.12 -104.29 -0.64 -2.68 16 7 C -0.09 -1.11 6.20 -104.34 -0.65 -1.76 16 8 C -0.13 -1.65 9.98 -39.46 -0.39 -2.04 16 9 C 0.08 0.94 6.65 -4.10 -0.03 0.91 16 10 N -0.50 -7.38 5.50 -234.90 -1.29 -8.67 16 11 C 0.04 0.66 4.63 -3.82 -0.02 0.64 16 12 C -0.10 -1.94 5.19 -26.73 -0.14 -2.08 16 13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 14 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 18 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 C 0.08 1.04 6.41 -4.10 -0.03 1.01 16 23 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 25 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 27 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.20 7.97 -51.93 -0.41 0.78 16 32 H 0.03 0.58 7.99 -51.93 -0.42 0.17 16 33 H 0.05 1.07 6.53 -51.93 -0.34 0.73 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -32.33 315.82 -8.99 -41.32 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.90 Total: -2.27 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.46 Total: -21.32 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.52 Total: -36.21 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.20 Total: -3.71 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.33 -8.99 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.702 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds