Wall clock time and date at job start Mon Mar 30 2020 06:42:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35896 * 117.00039 * 2 1
4 4 C 1.38760 * 120.05834 * 359.97438 * 3 2 1
5 5 C 1.38117 * 119.94818 * 179.97438 * 4 3 2
6 6 C 1.38235 * 120.10263 * 359.97438 * 5 4 3
7 7 C 1.38485 * 120.05520 * 0.02562 * 6 5 4
8 8 C 1.38096 * 120.02349 * 359.74207 * 7 6 5
9 9 C 1.51192 * 108.25137 * 180.02562 * 7 6 5
10 10 N 1.48052 * 105.67162 * 342.48350 * 9 7 6
11 11 C 1.46905 * 110.99908 * 268.26039 * 10 9 7
12 12 C 1.53003 * 109.46849 * 184.88516 * 11 10 9
13 13 C 1.52997 * 109.46635 * 180.02562 * 12 11 10
14 14 C 1.50708 * 109.46884 * 180.02562 * 13 12 11
15 15 H 1.08000 * 119.99725 * 0.02562 * 14 13 12
16 16 C 1.37874 * 120.00044 * 180.02562 * 14 13 12
17 17 N 1.31515 * 120.00255 * 180.02562 * 16 14 13
18 18 Si 1.86802 * 120.00248 * 359.97438 * 16 14 13
19 19 H 1.48500 * 109.46955 * 90.00045 * 18 16 14
20 20 H 1.48488 * 109.47714 * 210.00163 * 18 16 14
21 21 H 1.48499 * 109.47017 * 330.00691 * 18 16 14
22 22 C 1.48051 * 103.89340 * 27.62465 * 10 9 7
23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.47187 * 300.00222 * 1 2 3
25 25 H 1.09001 * 109.46558 * 60.00270 * 1 2 3
26 26 H 1.07997 * 120.02474 * 359.97438 * 4 3 2
27 27 H 1.07995 * 119.95079 * 180.02562 * 5 4 3
28 28 H 1.08002 * 120.00443 * 180.25458 * 8 7 6
29 29 H 1.09001 * 110.20791 * 223.43448 * 9 7 6
30 30 H 1.08995 * 110.21369 * 101.53153 * 9 7 6
31 31 H 1.08998 * 109.46999 * 304.88791 * 11 10 9
32 32 H 1.09001 * 109.46936 * 64.89278 * 11 10 9
33 33 H 1.08998 * 109.47544 * 299.99941 * 12 11 10
34 34 H 1.09001 * 109.46730 * 60.00635 * 12 11 10
35 35 H 1.08996 * 109.47600 * 299.99737 * 13 12 11
36 36 H 1.08993 * 109.47398 * 60.00503 * 13 12 11
37 37 H 0.96999 * 120.00462 * 180.02562 * 17 16 14
38 38 H 1.08993 * 110.20763 * 213.32200 * 22 10 9
39 39 H 1.09000 * 110.20081 * 91.42512 * 22 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 1.2915 2.3754 -0.0005
5 6 1.9209 3.6048 0.0000
6 6 3.3013 3.6769 0.0016
7 6 4.0565 2.5161 0.0021
8 6 3.4311 1.2849 0.0065
9 6 5.5183 2.9022 0.0046
10 7 5.5585 4.3189 -0.4237
11 6 5.7216 4.4243 -1.8798
12 6 5.8808 5.8951 -2.2700
13 6 6.0501 6.0049 -3.7866
14 6 6.2075 7.4536 -4.1710
15 1 6.1891 8.2193 -3.4095
16 6 6.3750 7.8014 -5.4945
17 7 6.5129 9.0655 -5.8299
18 14 6.4075 6.4769 -6.8115
19 1 5.0282 6.2375 -7.3068
20 1 7.2679 6.9196 -7.9378
21 1 6.9520 5.2206 -6.2366
22 6 4.2470 4.8567 0.0036
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 -0.3632 0.5138 -0.8900
26 1 0.2129 2.3204 -0.0014
27 1 1.3337 4.5111 0.0000
28 1 4.0204 0.3798 0.0110
29 1 6.0731 2.2806 -0.6982
30 1 5.9331 2.8002 1.0073
31 1 6.6076 3.8688 -2.1873
32 1 4.8431 4.0102 -2.3747
33 1 4.9948 6.4506 -1.9625
34 1 6.7593 6.3092 -1.7751
35 1 6.9359 5.4494 -4.0946
36 1 5.1714 5.5909 -4.2812
37 1 6.6304 9.3103 -6.7611
38 1 3.9040 5.6154 -0.6998
39 1 4.3214 5.2780 1.0061
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000692906319.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:42:23
Heat of formation + Delta-G solvation = -6.617914 kcal
Electronic energy + Delta-G solvation = -18907.279444 eV
Core-core repulsion = 16008.056320 eV
Total energy + Delta-G solvation = -2899.223124 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.81470 -39.19625 -36.32419 -33.90441 -32.00267 -31.55597 -29.80906 -28.38472
-27.11399 -26.44559 -23.96154 -22.17818 -21.16293 -20.96936 -19.82051 -17.92972
-16.77271 -16.48266 -16.01058 -15.80956 -15.40197 -15.04815 -14.27599 -14.12059
-13.79687 -13.58270 -13.47987 -13.04876 -12.62239 -12.38700 -12.23360 -12.01854
-11.76643 -11.64195 -11.60370 -10.97083 -10.91733 -10.81533 -10.65891 -9.94048
-9.68755 -9.57601 -9.14770 -8.96398 -8.53510 -8.50848 -8.16055 -6.01391
-3.98999 1.14925 1.27261 2.97892 3.32554 3.39893 3.44061 3.55979
4.08338 4.38773 4.47857 4.63792 4.70421 4.82744 4.84441 5.01900
5.14484 5.17868 5.30224 5.32560 5.43285 5.49130 5.68849 5.71468
5.82733 5.89351 5.95346 6.06203 6.17121 6.18638 6.41813 6.52179
6.55530 6.59059 6.85862 7.02611 7.17414 7.18363 7.38060 7.48210
7.83048 8.57891 9.04238 9.61412 11.12194
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.026312 B = 0.003897 C = 0.003704
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1063.914422 B = 7183.064216 C = 7557.751884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.319 6.319
3 C 0.123 3.877
4 C -0.208 4.208
5 C -0.060 4.060
6 C -0.154 4.154
7 C -0.085 4.085
8 C -0.133 4.133
9 C 0.076 3.924
10 N -0.499 5.499
11 C 0.039 3.961
12 C -0.096 4.096
13 C -0.013 4.013
14 C -0.518 4.518
15 H 0.072 0.928
16 C 0.065 3.935
17 N -0.905 5.905
18 Si 0.880 3.120
19 H -0.278 1.278
20 H -0.288 1.288
21 H -0.266 1.266
22 C 0.076 3.924
23 H 0.099 0.901
24 H 0.055 0.945
25 H 0.055 0.945
26 H 0.129 0.871
27 H 0.126 0.874
28 H 0.129 0.871
29 H 0.082 0.918
30 H 0.098 0.902
31 H 0.073 0.927
32 H 0.033 0.967
33 H 0.053 0.947
34 H 0.063 0.937
35 H 0.016 0.984
36 H 0.008 0.992
37 H 0.262 0.738
38 H 0.089 0.911
39 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.842 -17.449 13.962 24.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.232 6.232
3 C 0.078 3.922
4 C -0.226 4.226
5 C -0.079 4.079
6 C -0.155 4.155
7 C -0.087 4.087
8 C -0.152 4.152
9 C -0.053 4.053
10 N -0.219 5.219
11 C -0.088 4.088
12 C -0.134 4.134
13 C -0.051 4.051
14 C -0.556 4.556
15 H 0.090 0.910
16 C -0.136 4.136
17 N -0.544 5.544
18 Si 0.707 3.293
19 H -0.204 1.204
20 H -0.214 1.214
21 H -0.190 1.190
22 C -0.052 4.052
23 H 0.117 0.883
24 H 0.073 0.927
25 H 0.074 0.926
26 H 0.146 0.854
27 H 0.144 0.856
28 H 0.147 0.853
29 H 0.100 0.900
30 H 0.116 0.884
31 H 0.091 0.909
32 H 0.052 0.948
33 H 0.071 0.929
34 H 0.082 0.918
35 H 0.034 0.966
36 H 0.027 0.973
37 H 0.072 0.928
38 H 0.108 0.892
39 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -10.233 -17.206 14.026 24.444
hybrid contribution -1.100 -0.948 -1.261 1.923
sum -11.333 -18.153 12.766 24.919
Atomic orbital electron populations
1.23046 0.78409 1.03836 1.01403 1.86045 1.21343 1.26924 1.88927
1.18833 0.92050 0.84114 0.97181 1.21124 0.99859 0.92110 1.09541
1.20294 0.93015 0.97197 0.97363 1.21218 0.94176 0.96869 1.03261
1.21042 0.97624 0.92627 0.97404 1.19612 0.91128 0.97477 1.06989
1.21829 0.90790 0.90187 1.02459 1.65240 1.29170 1.12155 1.15368
1.22587 1.00400 1.00180 0.85682 1.21464 1.01567 0.92015 0.98360
1.19550 0.96062 0.97901 0.91595 1.21148 1.49425 0.91325 0.93675
0.90986 1.25036 0.94681 0.95192 0.98657 1.69917 1.50490 1.16212
1.17805 0.86778 0.78211 0.82798 0.81501 1.20398 1.21395 1.19016
1.21801 0.86056 0.94923 1.02460 0.88298 0.92675 0.92614 0.85358
0.85625 0.85341 0.89990 0.88431 0.90851 0.94842 0.92852 0.91809
0.96605 0.97330 0.92789 0.89248 0.88857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 9.81 101.05 0.99 1.19 16
2 O -0.32 -3.50 10.50 -19.41 -0.20 -3.71 16
3 C 0.12 1.49 6.69 -39.21 -0.26 1.22 16
4 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16
5 C -0.06 -0.72 10.04 -39.63 -0.40 -1.11 16
6 C -0.15 -2.04 6.12 -104.29 -0.64 -2.68 16
7 C -0.09 -1.11 6.20 -104.34 -0.65 -1.76 16
8 C -0.13 -1.65 9.98 -39.46 -0.39 -2.04 16
9 C 0.08 0.94 6.65 -4.10 -0.03 0.91 16
10 N -0.50 -7.38 5.50 -234.90 -1.29 -8.67 16
11 C 0.04 0.66 4.63 -3.82 -0.02 0.64 16
12 C -0.10 -1.94 5.19 -26.73 -0.14 -2.08 16
13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16
14 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16
15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16
16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16
17 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16
18 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16
19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16
22 C 0.08 1.04 6.41 -4.10 -0.03 1.01 16
23 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16
25 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16
26 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16
27 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16
28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
29 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16
30 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16
31 H 0.07 1.20 7.97 -51.93 -0.41 0.78 16
32 H 0.03 0.58 7.99 -51.93 -0.42 0.17 16
33 H 0.05 1.07 6.53 -51.93 -0.34 0.73 16
34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
35 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16
36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16
37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
38 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16
39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
LS Contribution 315.82 15.07 4.76 4.76
Total: -1.00 -32.33 315.82 -8.99 -41.32
By element:
Atomic # 1 Polarization: 3.63 SS G_CDS: -5.90 Total: -2.27 kcal
Atomic # 6 Polarization: -18.86 SS G_CDS: -2.46 Total: -21.32 kcal
Atomic # 7 Polarization: -35.69 SS G_CDS: -0.52 Total: -36.21 kcal
Atomic # 8 Polarization: -3.50 SS G_CDS: -0.20 Total: -3.71 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -32.33 -8.99 -41.32 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692906319.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.702 kcal
(2) G-P(sol) polarization free energy of solvation -32.329 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds