Wall clock time and date at job start Mon Mar 30 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38760 * 120.05834 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94818 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.10263 * 359.97438 * 5 4 3 7 7 C 1.38485 * 120.05520 * 0.02562 * 6 5 4 8 8 C 1.38096 * 120.02349 * 359.74207 * 7 6 5 9 9 C 1.51192 * 108.25137 * 180.02562 * 7 6 5 10 10 N 1.48052 * 105.67162 * 342.48350 * 9 7 6 11 11 C 1.46905 * 110.99908 * 268.26039 * 10 9 7 12 12 C 1.53003 * 109.46849 * 184.88516 * 11 10 9 13 13 C 1.52997 * 109.46635 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46884 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99725 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00044 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00255 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00248 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46955 * 90.00045 * 18 16 14 20 20 H 1.48488 * 109.47714 * 210.00163 * 18 16 14 21 21 H 1.48499 * 109.47017 * 330.00691 * 18 16 14 22 22 C 1.48051 * 103.89340 * 27.62465 * 10 9 7 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 26 26 H 1.07997 * 120.02474 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.95079 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.00443 * 180.25458 * 8 7 6 29 29 H 1.09001 * 110.20791 * 223.43448 * 9 7 6 30 30 H 1.08995 * 110.21369 * 101.53153 * 9 7 6 31 31 H 1.08998 * 109.46999 * 304.88791 * 11 10 9 32 32 H 1.09001 * 109.46936 * 64.89278 * 11 10 9 33 33 H 1.08998 * 109.47544 * 299.99941 * 12 11 10 34 34 H 1.09001 * 109.46730 * 60.00635 * 12 11 10 35 35 H 1.08996 * 109.47600 * 299.99737 * 13 12 11 36 36 H 1.08993 * 109.47398 * 60.00503 * 13 12 11 37 37 H 0.96999 * 120.00462 * 180.02562 * 17 16 14 38 38 H 1.08993 * 110.20763 * 213.32200 * 22 10 9 39 39 H 1.09000 * 110.20081 * 91.42512 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3754 -0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3013 3.6769 0.0016 7 6 4.0565 2.5161 0.0021 8 6 3.4311 1.2849 0.0065 9 6 5.5183 2.9022 0.0046 10 7 5.5585 4.3189 -0.4237 11 6 5.7216 4.4243 -1.8798 12 6 5.8808 5.8951 -2.2700 13 6 6.0501 6.0049 -3.7866 14 6 6.2075 7.4536 -4.1710 15 1 6.1891 8.2193 -3.4095 16 6 6.3750 7.8014 -5.4945 17 7 6.5129 9.0655 -5.8299 18 14 6.4075 6.4769 -6.8115 19 1 5.0282 6.2375 -7.3068 20 1 7.2679 6.9196 -7.9378 21 1 6.9520 5.2206 -6.2366 22 6 4.2470 4.8567 0.0036 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2129 2.3204 -0.0014 27 1 1.3337 4.5111 0.0000 28 1 4.0204 0.3798 0.0110 29 1 6.0731 2.2806 -0.6982 30 1 5.9331 2.8002 1.0073 31 1 6.6076 3.8688 -2.1873 32 1 4.8431 4.0102 -2.3747 33 1 4.9948 6.4506 -1.9625 34 1 6.7593 6.3092 -1.7751 35 1 6.9359 5.4494 -4.0946 36 1 5.1714 5.5909 -4.2812 37 1 6.6304 9.3103 -6.7611 38 1 3.9040 5.6154 -0.6998 39 1 4.3214 5.2780 1.0061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692906319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:22 Heat of formation + Delta-G solvation = -27.571343 kcal Electronic energy + Delta-G solvation = -18908.188053 eV Core-core repulsion = 16008.056320 eV Total energy + Delta-G solvation = -2900.131733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74141 -40.08097 -37.40081 -35.69843 -33.86132 -32.51854 -31.10312 -29.20256 -28.58612 -27.31940 -25.43792 -23.35928 -22.45932 -21.99136 -21.34286 -18.90395 -18.72986 -17.46572 -16.85468 -16.73284 -16.50823 -16.39576 -15.89941 -15.39315 -15.07856 -14.71837 -14.47688 -14.26982 -14.10678 -13.72038 -13.42268 -13.19887 -12.98250 -12.74430 -12.69602 -12.60328 -12.35562 -11.82358 -11.80749 -11.68415 -11.50097 -11.42868 -11.22080 -10.76156 -9.88121 -9.67193 -9.06213 -8.29171 -6.33285 0.25631 0.36012 1.35489 1.37539 1.49862 2.26629 2.36394 2.65809 2.95641 3.06017 3.48065 3.71902 3.87125 4.05931 4.19365 4.22085 4.23976 4.37620 4.40164 4.40362 4.56198 4.64748 4.70912 4.71209 4.80715 4.86739 4.88875 4.92829 5.02887 5.10900 5.18393 5.31079 5.45235 5.52927 5.60147 5.66239 5.67598 5.85541 5.99973 6.30076 6.39698 6.74839 7.31262 8.87851 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026312 B = 0.003897 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.914422 B = 7183.064216 C = 7557.751884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.207 4.207 5 C -0.067 4.067 6 C -0.173 4.173 7 C -0.093 4.093 8 C -0.145 4.145 9 C 0.077 3.923 10 N -0.508 5.508 11 C 0.053 3.947 12 C -0.087 4.087 13 C -0.009 4.009 14 C -0.532 4.532 15 H 0.031 0.969 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.246 1.246 22 C 0.077 3.923 23 H 0.120 0.880 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.015 0.985 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 -20.094 13.998 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.072 3.928 4 C -0.226 4.226 5 C -0.086 4.086 6 C -0.175 4.175 7 C -0.095 4.095 8 C -0.164 4.164 9 C -0.050 4.050 10 N -0.228 5.228 11 C -0.075 4.075 12 C -0.125 4.125 13 C -0.047 4.047 14 C -0.570 4.570 15 H 0.049 0.951 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.775 3.225 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.169 1.169 22 C -0.051 4.051 23 H 0.138 0.862 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.171 0.829 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.185 -19.866 14.089 26.800 hybrid contribution -0.884 -0.083 -1.179 1.476 sum -12.069 -19.949 12.910 26.651 Atomic orbital electron populations 1.23356 0.76339 1.05649 1.02258 1.86032 1.23526 1.26477 1.88699 1.19014 0.92231 0.84856 0.96716 1.21402 1.01169 0.91453 1.08572 1.20559 0.92775 0.98282 0.96956 1.21272 0.94860 0.96615 1.04756 1.21097 0.97738 0.92816 0.97851 1.19803 0.91751 0.97665 1.07196 1.21886 0.90959 0.88690 1.03484 1.65205 1.29950 1.14025 1.13636 1.22309 1.00596 0.97279 0.87287 1.21273 1.00830 0.94698 0.95675 1.19484 0.96336 0.94591 0.94318 1.21502 1.49240 0.93131 0.93137 0.95077 1.26044 0.94149 0.97767 1.01445 1.70072 1.51856 1.18749 1.18669 0.85634 0.78857 0.80005 0.78019 1.19255 1.20819 1.16916 1.21770 0.85915 0.94910 1.02533 0.86173 0.91505 0.91987 0.82903 0.84169 0.84340 0.89120 0.86800 0.89962 0.95264 0.93448 0.92855 0.96005 0.96704 0.92482 0.90754 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.63 10.50 -92.39 -0.97 -7.60 16 3 C 0.12 2.61 6.69 22.51 0.15 2.76 16 4 C -0.21 -4.18 9.04 22.37 0.20 -3.98 16 5 C -0.07 -1.50 10.04 22.24 0.22 -1.28 16 6 C -0.17 -4.41 6.12 -19.65 -0.12 -4.53 16 7 C -0.09 -2.29 6.20 -19.68 -0.12 -2.41 16 8 C -0.15 -3.37 9.98 22.35 0.22 -3.14 16 9 C 0.08 1.79 6.65 85.49 0.57 2.36 16 10 N -0.51 -14.42 5.50 -897.08 -4.93 -19.36 16 11 C 0.05 1.73 4.63 86.30 0.40 2.13 16 12 C -0.09 -3.51 5.19 30.59 0.16 -3.35 16 13 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 14 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 15 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 16 C 0.00 0.14 5.47 84.65 0.46 0.61 16 17 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 18 Si 0.95 45.05 27.47 68.60 1.88 46.93 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 22 C 0.08 2.05 6.41 85.49 0.55 2.60 16 23 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 25 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 26 H 0.15 2.19 6.30 -2.91 -0.02 2.17 16 27 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.09 1.93 7.69 -2.39 -0.02 1.91 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16 32 H 0.03 0.97 7.99 -2.39 -0.02 0.95 16 33 H 0.05 1.94 6.53 -2.39 -0.02 1.92 16 34 H 0.05 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 36 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.07 2.18 6.17 -2.39 -0.01 2.17 16 39 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -69.97 315.82 1.43 -68.54 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.97 Total: 10.66 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 4.18 Total: -38.55 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -4.63 Total: -79.99 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.97 Total: -7.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -69.97 1.43 -68.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.972 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds