Wall clock time and date at job start Mon Mar 30 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47094 * 2 1 4 4 C 1.53004 * 109.47072 * 119.99624 * 2 1 3 5 5 C 1.50699 * 109.47028 * 184.99910 * 4 2 1 6 6 H 1.08002 * 120.00176 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00132 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00092 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99701 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46885 * 90.00291 * 9 7 5 11 11 H 1.48505 * 109.47240 * 209.99798 * 9 7 5 12 12 H 1.48493 * 109.47245 * 330.00334 * 9 7 5 13 13 O 1.42901 * 109.47363 * 239.99873 * 2 1 3 14 14 C 1.35901 * 116.99825 * 84.92233 * 13 2 1 15 15 C 1.38750 * 120.08935 * 174.30977 * 14 13 2 16 16 C 1.38006 * 119.88030 * 179.75072 * 15 14 13 17 17 C 1.38549 * 120.28563 * 0.52504 * 16 15 14 18 18 C 1.38258 * 119.93928 * 359.72931 * 17 16 15 19 19 C 1.38413 * 119.90693 * 0.02562 * 18 17 16 20 20 C 1.51375 * 109.75677 * 179.97438 * 18 17 16 21 21 C 1.54348 * 105.17076 * 342.80888 * 20 18 17 22 22 C 1.51390 * 130.31692 * 179.73771 * 17 16 15 23 23 H 1.08994 * 110.30463 * 316.12177 * 22 17 16 24 24 N 1.46902 * 110.30357 * 78.27937 * 22 17 16 25 25 H 1.08991 * 109.47226 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46717 * 300.00387 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99877 * 1 2 3 28 28 H 1.08992 * 109.47068 * 304.99580 * 4 2 1 29 29 H 1.08997 * 109.46806 * 65.00223 * 4 2 1 30 30 H 0.96995 * 119.99590 * 179.97438 * 8 7 5 31 31 H 1.08008 * 120.05835 * 0.02562 * 15 14 13 32 32 H 1.07999 * 119.85691 * 180.25045 * 16 15 14 33 33 H 1.07991 * 119.91694 * 180.02562 * 19 18 17 34 34 H 1.09002 * 110.30330 * 101.72545 * 20 18 17 35 35 H 1.08994 * 110.30789 * 223.88259 * 20 18 17 36 36 H 1.09004 * 110.81710 * 268.13928 * 21 20 18 37 37 H 1.08995 * 110.82717 * 144.59881 * 21 20 18 38 38 H 1.00898 * 110.99656 * 298.54266 * 24 22 17 39 39 H 1.00898 * 111.00370 * 62.49901 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2305 -1.1934 2.3579 8 7 5.5412 -1.1010 2.4130 9 14 3.3015 -2.1084 3.6954 10 1 3.1700 -3.5384 3.3171 11 1 4.0454 -2.0018 4.9763 12 1 1.9509 -1.5126 3.8563 13 8 2.0064 -0.6737 -1.1667 14 6 2.1110 0.0622 -2.3045 15 6 2.6765 -0.4939 -3.4430 16 6 2.7759 0.2556 -4.5976 17 6 2.3233 1.5649 -4.6218 18 6 1.7643 2.1229 -3.4871 19 6 1.6586 1.3720 -2.3291 20 6 1.3527 3.5520 -3.7691 21 6 2.1130 3.9453 -5.0535 22 6 2.3246 2.5811 -5.7440 23 1 3.2811 2.5665 -6.2663 24 7 1.2267 2.3074 -6.6808 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6055 -0.2616 2.1369 29 1 1.7517 -1.7714 1.2057 30 1 6.0255 -1.5077 3.1484 31 1 3.0341 -1.5129 -3.4270 32 1 3.2124 -0.1789 -5.4847 33 1 1.2216 1.8076 -1.4428 34 1 0.2768 3.6103 -3.9338 35 1 1.6453 4.2000 -2.9430 36 1 3.0689 4.4097 -4.8110 37 1 1.5077 4.6045 -5.6757 38 1 1.3312 1.3976 -7.1043 39 1 0.3314 2.3927 -6.2235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695792192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:54 Heat of formation + Delta-G solvation = -25.821025 kcal Electronic energy + Delta-G solvation = -19402.547011 eV Core-core repulsion = 16502.491178 eV Total energy + Delta-G solvation = -2900.055833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40324 -38.64632 -35.51159 -33.36495 -32.56897 -31.68283 -29.87711 -28.30959 -28.02638 -25.75212 -23.48757 -22.53533 -20.78686 -20.53247 -19.84268 -17.38696 -16.76612 -16.54903 -15.93157 -15.20618 -14.74964 -14.68260 -14.25515 -13.86741 -13.59971 -13.45316 -13.07976 -12.76087 -12.55557 -12.24075 -11.94703 -11.86282 -11.78653 -11.65375 -11.41074 -11.02392 -10.95529 -10.67113 -10.55296 -10.10487 -9.87863 -9.61370 -9.25901 -8.97406 -8.61150 -8.56763 -7.66533 -6.05838 -4.04191 1.53899 1.64779 3.28532 3.35637 3.36737 3.78173 3.96594 4.38456 4.41860 4.44572 4.70209 5.03981 5.07199 5.17383 5.22611 5.28129 5.44595 5.53980 5.56597 5.62497 5.68934 5.78326 5.79504 5.88327 5.95570 6.03684 6.10801 6.23400 6.37043 6.46166 6.52458 6.67673 6.75089 6.93436 6.98282 7.05574 7.18630 7.27580 7.69509 8.05907 8.49526 8.98910 9.54487 11.07706 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033277 B = 0.004466 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.213176 B = 6267.823381 C = 6432.163225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.095 3.905 3 H 0.068 0.932 4 C -0.011 4.011 5 C -0.516 4.516 6 H 0.073 0.927 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.879 3.121 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.289 6.289 14 C 0.160 3.840 15 C -0.162 4.162 16 C -0.061 4.061 17 C -0.198 4.198 18 C -0.052 4.052 19 C -0.205 4.205 20 C -0.086 4.086 21 C -0.115 4.115 22 C 0.137 3.863 23 H 0.084 0.916 24 N -0.835 5.835 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.341 0.659 39 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 6.926 -13.890 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.039 3.961 3 H 0.086 0.914 4 C -0.048 4.048 5 C -0.554 4.554 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.706 3.294 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.191 1.191 13 O -0.201 6.201 14 C 0.112 3.888 15 C -0.180 4.180 16 C -0.079 4.079 17 C -0.200 4.200 18 C -0.053 4.053 19 C -0.224 4.224 20 C -0.123 4.123 21 C -0.153 4.153 22 C 0.026 3.974 23 H 0.103 0.897 24 N -0.362 5.362 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.758 7.319 -14.151 18.683 hybrid contribution -0.557 -1.286 1.652 2.167 sum -10.316 6.033 -12.498 17.292 Atomic orbital electron populations 1.22445 0.96905 1.02639 1.01741 1.22587 0.91631 0.97239 0.84639 0.91391 1.19736 0.98186 0.96204 0.90649 1.21003 0.89325 1.35470 1.09604 0.90927 1.24995 0.94741 0.95795 0.97817 1.69913 1.06511 1.45278 1.32269 0.86804 0.80312 0.80725 0.81580 1.20184 1.21299 1.19101 1.86268 1.79853 1.37825 1.16159 1.19044 0.92337 0.89893 0.87519 1.20369 1.04765 1.01487 0.91415 1.20312 0.97808 0.92727 0.97076 1.21192 1.05498 0.95792 0.97540 1.20274 0.96547 0.95422 0.93014 1.20792 1.08194 0.94396 0.98989 1.21104 1.00259 0.92604 0.98373 1.22348 1.01067 0.96300 0.95556 1.20756 0.95228 0.91963 0.89467 0.89741 1.59167 1.05191 1.36744 1.35089 0.91908 0.91331 0.92954 0.94503 0.95777 0.92695 0.85148 0.86249 0.85450 0.90433 0.90528 0.90452 0.89862 0.84700 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 9.17 37.16 0.34 -2.52 16 2 C 0.09 1.91 2.17 -26.73 -0.06 1.85 16 3 H 0.07 1.37 6.31 -51.93 -0.33 1.04 16 4 C -0.01 -0.25 3.75 -27.88 -0.10 -0.36 16 5 C -0.52 -14.82 9.43 -34.44 -0.32 -15.14 16 6 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 O -0.29 -6.13 9.55 -19.43 -0.19 -6.32 16 14 C 0.16 2.96 6.60 -39.26 -0.26 2.70 16 15 C -0.16 -2.69 9.99 -39.48 -0.39 -3.08 16 16 C -0.06 -0.84 10.03 -39.55 -0.40 -1.24 16 17 C -0.20 -2.63 5.74 -104.16 -0.60 -3.23 16 18 C -0.05 -0.73 6.13 -104.22 -0.64 -1.37 16 19 C -0.20 -3.37 8.25 -39.38 -0.32 -3.70 16 20 C -0.09 -0.94 6.77 -26.85 -0.18 -1.12 16 21 C -0.11 -1.12 6.71 -25.31 -0.17 -1.29 16 22 C 0.14 1.47 4.01 -67.81 -0.27 1.19 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 24 N -0.83 -7.83 9.29 -4.75 -0.04 -7.87 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.75 6.91 -51.93 -0.36 0.39 16 28 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 29 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.13 2.01 5.42 -52.49 -0.28 1.73 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.34 2.91 9.06 -39.29 -0.36 2.56 16 39 H 0.34 3.05 8.97 -39.29 -0.35 2.70 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -31.45 316.03 -8.68 -40.13 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.83 Total: 5.03 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -3.48 Total: -25.43 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.73 Total: -35.07 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.19 Total: -6.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.45 -8.68 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.304 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds