Wall clock time and date at job start Mon Mar 30 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47094 * 2 1 4 4 C 1.53004 * 109.47072 * 119.99624 * 2 1 3 5 5 C 1.50699 * 109.47028 * 184.99910 * 4 2 1 6 6 H 1.08002 * 120.00176 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00132 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00092 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99701 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46885 * 90.00291 * 9 7 5 11 11 H 1.48505 * 109.47240 * 209.99798 * 9 7 5 12 12 H 1.48493 * 109.47245 * 330.00334 * 9 7 5 13 13 O 1.42901 * 109.47363 * 239.99873 * 2 1 3 14 14 C 1.35901 * 116.99825 * 84.92233 * 13 2 1 15 15 C 1.38750 * 120.08935 * 174.30977 * 14 13 2 16 16 C 1.38006 * 119.88030 * 179.75072 * 15 14 13 17 17 C 1.38549 * 120.28563 * 0.52504 * 16 15 14 18 18 C 1.38258 * 119.93928 * 359.72931 * 17 16 15 19 19 C 1.38413 * 119.90693 * 0.02562 * 18 17 16 20 20 C 1.51375 * 109.75677 * 179.97438 * 18 17 16 21 21 C 1.54348 * 105.17076 * 342.80888 * 20 18 17 22 22 C 1.51390 * 130.31692 * 179.73771 * 17 16 15 23 23 H 1.08994 * 110.30463 * 316.12177 * 22 17 16 24 24 N 1.46902 * 110.30357 * 78.27937 * 22 17 16 25 25 H 1.08991 * 109.47226 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46717 * 300.00387 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99877 * 1 2 3 28 28 H 1.08992 * 109.47068 * 304.99580 * 4 2 1 29 29 H 1.08997 * 109.46806 * 65.00223 * 4 2 1 30 30 H 0.96995 * 119.99590 * 179.97438 * 8 7 5 31 31 H 1.08008 * 120.05835 * 0.02562 * 15 14 13 32 32 H 1.07999 * 119.85691 * 180.25045 * 16 15 14 33 33 H 1.07991 * 119.91694 * 180.02562 * 19 18 17 34 34 H 1.09002 * 110.30330 * 101.72545 * 20 18 17 35 35 H 1.08994 * 110.30789 * 223.88259 * 20 18 17 36 36 H 1.09004 * 110.81710 * 268.13928 * 21 20 18 37 37 H 1.08995 * 110.82717 * 144.59881 * 21 20 18 38 38 H 1.00898 * 110.99656 * 298.54266 * 24 22 17 39 39 H 1.00898 * 111.00370 * 62.49901 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2305 -1.1934 2.3579 8 7 5.5412 -1.1010 2.4130 9 14 3.3015 -2.1084 3.6954 10 1 3.1700 -3.5384 3.3171 11 1 4.0454 -2.0018 4.9763 12 1 1.9509 -1.5126 3.8563 13 8 2.0064 -0.6737 -1.1667 14 6 2.1110 0.0622 -2.3045 15 6 2.6765 -0.4939 -3.4430 16 6 2.7759 0.2556 -4.5976 17 6 2.3233 1.5649 -4.6218 18 6 1.7643 2.1229 -3.4871 19 6 1.6586 1.3720 -2.3291 20 6 1.3527 3.5520 -3.7691 21 6 2.1130 3.9453 -5.0535 22 6 2.3246 2.5811 -5.7440 23 1 3.2811 2.5665 -6.2663 24 7 1.2267 2.3074 -6.6808 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6055 -0.2616 2.1369 29 1 1.7517 -1.7714 1.2057 30 1 6.0255 -1.5077 3.1484 31 1 3.0341 -1.5129 -3.4270 32 1 3.2124 -0.1789 -5.4847 33 1 1.2216 1.8076 -1.4428 34 1 0.2768 3.6103 -3.9338 35 1 1.6453 4.2000 -2.9430 36 1 3.0689 4.4097 -4.8110 37 1 1.5077 4.6045 -5.6757 38 1 1.3312 1.3976 -7.1043 39 1 0.3314 2.3927 -6.2235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695792192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:54 Heat of formation + Delta-G solvation = -46.505336 kcal Electronic energy + Delta-G solvation = -19403.443950 eV Core-core repulsion = 16502.491178 eV Total energy + Delta-G solvation = -2900.952772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58666 -39.93245 -36.70392 -35.24919 -33.71074 -33.32951 -30.96865 -29.87720 -29.37468 -26.68888 -25.10148 -24.03908 -22.04502 -21.65630 -21.15597 -19.02322 -18.67357 -17.55626 -16.98957 -16.46304 -16.33940 -16.05786 -15.51284 -15.14831 -14.91234 -14.60500 -14.36663 -14.22440 -13.99759 -13.79191 -13.49612 -13.28045 -12.98687 -12.74394 -12.63588 -12.48197 -12.14288 -11.85171 -11.81665 -11.75414 -11.60320 -11.36314 -11.20100 -10.79944 -9.84421 -9.75878 -8.91507 -8.31094 -6.35873 0.34473 0.43108 1.34560 1.36702 1.47887 2.33594 2.39676 2.74141 3.05106 3.41156 3.55955 3.84879 3.92096 4.00355 4.12181 4.14478 4.20826 4.31933 4.34567 4.38929 4.62354 4.66851 4.78056 4.87365 4.88737 4.96830 5.01167 5.06203 5.16320 5.18769 5.25453 5.27687 5.37386 5.44350 5.58370 5.61398 5.89844 6.20759 6.21521 6.56807 6.61938 6.71359 7.26877 8.86428 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033277 B = 0.004466 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.213176 B = 6267.823381 C = 6432.163225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.058 0.942 4 C -0.010 4.010 5 C -0.526 4.526 6 H 0.021 0.979 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.237 1.237 13 O -0.322 6.322 14 C 0.123 3.877 15 C -0.183 4.183 16 C -0.058 4.058 17 C -0.192 4.192 18 C -0.059 4.059 19 C -0.215 4.215 20 C -0.084 4.084 21 C -0.109 4.109 22 C 0.141 3.859 23 H 0.090 0.910 24 N -0.829 5.829 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.266 0.734 31 H 0.125 0.875 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.347 0.653 39 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 7.826 -14.662 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.564 4.564 6 H 0.039 0.961 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.161 1.161 13 O -0.236 6.236 14 C 0.077 3.923 15 C -0.202 4.202 16 C -0.076 4.076 17 C -0.194 4.194 18 C -0.059 4.059 19 C -0.234 4.234 20 C -0.121 4.121 21 C -0.147 4.147 22 C 0.029 3.971 23 H 0.108 0.892 24 N -0.357 5.357 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.160 0.840 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.076 8.235 -14.952 20.910 hybrid contribution 0.248 -1.491 1.720 2.290 sum -11.828 6.744 -13.232 18.986 Atomic orbital electron populations 1.22328 0.93218 1.03381 1.03493 1.22477 0.94363 0.95856 0.83370 0.92439 1.19701 0.94678 0.96905 0.93404 1.21274 0.92173 1.34684 1.08233 0.96053 1.26056 0.95656 0.96837 1.00833 1.70085 1.08724 1.46935 1.33625 0.85605 0.79950 0.79174 0.77589 1.19532 1.20785 1.16054 1.86171 1.81126 1.39125 1.17167 1.19366 0.94685 0.91103 0.87193 1.20566 1.05561 1.01873 0.92184 1.20609 0.97086 0.93013 0.96939 1.21676 1.03547 0.95795 0.98387 1.20725 0.95802 0.97093 0.92313 1.20880 1.08558 0.93876 1.00079 1.21202 1.01544 0.90227 0.99130 1.22373 1.01442 0.95964 0.94924 1.20810 0.96068 0.91459 0.88731 0.89192 1.59173 1.04994 1.37216 1.34290 0.91622 0.89227 0.91497 0.92791 0.95660 0.92472 0.85742 0.83473 0.85386 0.88570 0.90162 0.90151 0.88060 0.84047 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 9.17 71.98 0.66 -4.42 16 2 C 0.09 3.89 2.17 30.60 0.07 3.95 16 3 H 0.06 2.40 6.31 -2.39 -0.02 2.39 16 4 C -0.01 -0.46 3.75 29.85 0.11 -0.35 16 5 C -0.53 -31.42 9.43 25.60 0.24 -31.18 16 6 H 0.02 1.44 7.99 -2.91 -0.02 1.41 16 7 C 0.00 0.15 5.47 84.65 0.46 0.62 16 8 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 9 Si 0.95 44.47 27.47 68.60 1.88 46.36 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 13 O -0.32 -14.34 9.55 -92.43 -0.88 -15.22 16 14 C 0.12 4.74 6.60 22.48 0.15 4.89 16 15 C -0.18 -6.32 9.99 22.34 0.22 -6.09 16 16 C -0.06 -1.58 10.03 22.29 0.22 -1.36 16 17 C -0.19 -4.79 5.74 -19.57 -0.11 -4.90 16 18 C -0.06 -1.59 6.13 -19.60 -0.12 -1.71 16 19 C -0.22 -7.17 8.25 22.40 0.18 -6.98 16 20 C -0.08 -1.62 6.77 30.52 0.21 -1.41 16 21 C -0.11 -1.79 6.71 31.51 0.21 -1.58 16 22 C 0.14 2.62 4.01 44.85 0.18 2.80 16 23 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 24 N -0.83 -12.99 9.29 -168.95 -1.57 -14.56 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 1.83 6.91 -2.39 -0.02 1.81 16 28 H 0.05 2.37 7.20 -2.39 -0.02 2.36 16 29 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 30 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.13 4.10 5.42 -2.91 -0.02 4.09 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.35 8.08 -2.39 -0.02 1.33 16 38 H 0.35 4.92 9.06 -89.70 -0.81 4.11 16 39 H 0.34 5.07 8.97 -89.70 -0.80 4.27 16 Total: -1.00 -71.51 316.03 1.81 -69.70 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.61 Total: 22.57 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 2.69 Total: -47.73 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.27 Total: -75.68 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.88 Total: -15.22 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -71.51 1.81 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.197 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds