Wall clock time and date at job start Mon Mar 30 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 C 1.52998 * 109.46938 * 240.00014 * 2 1 3 5 5 C 1.50703 * 109.46706 * 177.41679 * 4 2 1 6 6 H 1.08003 * 120.00284 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00047 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00149 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46936 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47300 * 120.00176 * 9 7 5 12 12 H 1.48507 * 109.47184 * 240.00350 * 9 7 5 13 13 N 1.46894 * 109.46999 * 120.00126 * 2 1 3 14 14 C 1.46431 * 110.99909 * 263.99911 * 13 2 1 15 15 C 1.53373 * 108.66515 * 72.19280 * 14 13 2 16 16 C 1.53046 * 107.93426 * 68.23210 * 15 14 13 17 17 H 1.08996 * 109.43655 * 72.71259 * 16 15 14 18 18 O 1.42900 * 109.44165 * 192.63860 * 16 15 14 19 19 C 1.50802 * 109.65252 * 312.69466 * 16 15 14 20 20 C 1.38620 * 118.11853 * 195.75216 * 19 16 15 21 21 C 1.38051 * 120.48212 * 180.70704 * 20 19 16 22 22 C 1.38317 * 119.88838 * 359.40396 * 21 20 19 23 23 C 1.37805 * 119.95527 * 0.14554 * 22 21 20 24 24 C 1.38374 * 122.01727 * 15.66315 * 19 16 15 25 25 H 1.08996 * 109.47179 * 64.50098 * 1 2 3 26 26 H 1.09007 * 109.47039 * 184.49167 * 1 2 3 27 27 H 1.08999 * 109.47435 * 304.49426 * 1 2 3 28 28 H 1.08998 * 109.47306 * 297.41634 * 4 2 1 29 29 H 1.08998 * 109.47501 * 57.41697 * 4 2 1 30 30 H 0.96996 * 120.00348 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.60475 * 191.95084 * 14 13 2 32 32 H 1.09002 * 109.60444 * 312.43688 * 14 13 2 33 33 H 1.09005 * 109.77146 * 187.84409 * 15 14 13 34 34 H 1.09005 * 109.76900 * 308.57141 * 15 14 13 35 35 H 0.96695 * 113.99996 * 180.02562 * 18 16 15 36 36 H 1.07999 * 119.76263 * 0.43357 * 20 19 16 37 37 H 1.07998 * 120.05834 * 179.68106 * 21 20 19 38 38 H 1.08005 * 120.02406 * 180.17064 * 22 21 20 39 39 H 1.07998 * 119.79353 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5457 -0.6660 -1.2816 6 1 4.0849 -0.1668 -0.4901 7 6 4.2349 -1.2537 -2.3212 8 7 3.5783 -1.8620 -3.2848 9 14 6.1012 -1.1858 -2.3610 10 1 6.5952 -0.4489 -1.1701 11 1 6.6471 -2.5668 -2.3508 12 1 6.5450 -0.4872 -3.5940 13 7 2.0197 -0.6925 1.1994 14 6 2.3293 0.2614 2.2664 15 6 1.0133 0.8125 2.8292 16 6 0.2993 -0.3270 3.5599 17 1 0.8183 -0.5400 4.4945 18 8 -1.0477 0.0585 3.8410 19 6 0.2978 -1.5621 2.6947 20 6 -0.5737 -2.5888 3.0232 21 6 -0.6054 -3.7473 2.2731 22 6 0.2287 -3.8825 1.1781 23 6 1.0912 -2.8623 0.8400 24 6 1.1315 -1.6904 1.5978 25 1 -0.3633 0.4424 -0.9275 26 1 -0.3633 -1.0246 0.0805 27 1 -0.3634 0.5820 0.8470 28 1 1.7150 -1.7614 -1.2264 29 1 1.6394 -0.2349 -2.1386 30 1 4.0631 -2.2751 -4.0163 31 1 2.8831 -0.2429 3.0583 32 1 2.9261 1.0797 1.8635 33 1 1.2217 1.6242 3.5263 34 1 0.3882 1.1779 2.0144 35 1 -1.5614 -0.6169 4.3047 36 1 -1.2296 -2.4834 3.8746 37 1 -1.2835 -4.5450 2.5382 38 1 0.2038 -4.7869 0.5881 39 1 1.7411 -2.9705 -0.0158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695796443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:11 Heat of formation + Delta-G solvation = -12.067233 kcal Electronic energy + Delta-G solvation = -20603.293302 eV Core-core repulsion = 17703.833878 eV Total energy + Delta-G solvation = -2899.459424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75121 -37.02177 -36.78399 -33.56269 -32.05558 -30.55462 -30.07110 -28.90567 -27.36467 -24.21845 -23.25153 -22.77982 -21.59311 -20.41883 -18.84688 -17.65036 -16.26358 -16.10905 -15.76151 -15.46707 -14.68656 -14.45476 -14.08573 -13.97920 -13.32285 -13.01128 -12.72227 -12.42160 -12.20526 -12.04983 -11.83898 -11.63747 -11.42940 -11.34229 -11.11516 -10.90155 -10.63519 -10.52668 -10.26455 -9.93199 -9.86216 -9.41242 -8.97906 -8.64472 -8.44278 -8.26141 -7.27219 -5.91069 -3.89209 1.65523 1.77695 3.36303 3.44103 3.48455 4.00638 4.20073 4.49365 4.54362 4.81820 4.92202 5.08458 5.19345 5.41204 5.46136 5.49619 5.55806 5.70370 5.77595 5.79785 5.89931 5.97733 6.04378 6.10461 6.20329 6.32649 6.36192 6.51996 6.64725 6.75189 6.84453 6.93313 6.97659 7.20160 7.50071 7.58393 7.73195 7.93434 8.01864 8.10009 8.54177 9.15628 9.72401 11.20683 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.006741 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.306890 B = 4152.685972 C = 4649.330257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.094 3.906 3 H 0.071 0.929 4 C 0.026 3.974 5 C -0.491 4.491 6 H 0.058 0.942 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.478 5.478 14 C 0.061 3.939 15 C -0.162 4.162 16 C 0.155 3.845 17 H 0.060 0.940 18 O -0.560 6.560 19 C -0.173 4.173 20 C -0.107 4.107 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.117 4.117 24 C 0.155 3.845 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.020 0.980 30 H 0.257 0.743 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.372 0.628 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 0.377 13.144 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.011 4.011 3 H 0.089 0.911 4 C -0.011 4.011 5 C -0.530 4.530 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.193 5.193 14 C -0.067 4.067 15 C -0.200 4.200 16 C 0.096 3.904 17 H 0.077 0.923 18 O -0.366 6.366 19 C -0.176 4.176 20 C -0.126 4.126 21 C -0.167 4.167 22 C -0.126 4.126 23 C -0.136 4.136 24 C 0.058 3.942 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.220 0.780 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.276 0.675 12.524 14.500 hybrid contribution 0.210 -0.343 0.406 0.572 sum -7.066 0.332 12.930 14.738 Atomic orbital electron populations 1.22788 0.98101 1.02238 1.01317 1.22038 0.91135 0.97308 0.90579 0.91085 1.19344 0.96308 0.95928 0.89496 1.21162 0.91475 1.33965 1.06376 0.92370 1.24986 0.97960 0.95913 0.95908 1.69968 1.35022 1.37637 1.11629 0.86597 0.86535 0.77554 0.77642 1.19863 1.21288 1.21392 1.58675 1.41901 1.12816 1.05867 1.22255 0.95084 0.95536 0.93843 1.22486 0.98599 0.97347 1.01597 1.20526 0.82907 0.91567 0.95357 0.92251 1.86548 1.24037 1.45340 1.80697 1.20520 0.98806 0.97371 1.00924 1.20634 0.98636 0.93630 0.99663 1.20870 1.01025 0.97835 0.97014 1.21042 0.95966 0.98753 0.96802 1.21629 0.99494 0.91625 1.00889 1.18451 0.89698 0.93114 0.92967 0.92455 0.92162 0.92832 0.95446 0.96225 0.93326 0.90772 0.89306 0.90860 0.89275 0.78008 0.87273 0.86764 0.86235 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 7.98 37.16 0.30 -3.10 16 2 C 0.09 1.89 1.96 -67.71 -0.13 1.76 16 3 H 0.07 1.41 7.44 -51.93 -0.39 1.03 16 4 C 0.03 0.65 4.43 -27.88 -0.12 0.53 16 5 C -0.49 -13.44 8.78 -34.44 -0.30 -13.74 16 6 H 0.06 1.58 7.73 -52.48 -0.41 1.17 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.48 -9.09 4.03 -163.75 -0.66 -9.75 16 14 C 0.06 0.96 5.73 -3.89 -0.02 0.93 16 15 C -0.16 -2.28 5.43 -26.51 -0.14 -2.42 16 16 C 0.16 2.12 3.59 -27.81 -0.10 2.02 16 17 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 18 O -0.56 -7.28 13.19 -35.23 -0.46 -7.75 16 19 C -0.17 -2.66 5.22 -104.38 -0.55 -3.21 16 20 C -0.11 -1.45 9.22 -39.51 -0.36 -1.81 16 21 C -0.15 -2.04 10.05 -39.62 -0.40 -2.44 16 22 C -0.11 -1.68 10.03 -39.71 -0.40 -2.08 16 23 C -0.12 -2.19 8.02 -39.23 -0.31 -2.50 16 24 C 0.16 2.80 3.25 -83.85 -0.27 2.53 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.15 5.93 -51.92 -0.31 0.84 16 27 H 0.05 0.91 5.13 -51.93 -0.27 0.65 16 28 H 0.03 0.72 5.30 -51.93 -0.28 0.44 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.07 1.10 8.11 -51.93 -0.42 0.67 16 32 H 0.09 1.35 7.72 -51.93 -0.40 0.95 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.38 4.65 -51.93 -0.24 1.14 16 35 H 0.37 3.39 7.47 45.56 0.34 3.73 16 36 H 0.11 1.12 6.76 -52.49 -0.35 0.77 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 39 H 0.15 3.17 5.96 -52.49 -0.31 2.86 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -30.59 299.72 -8.52 -39.11 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.70 Total: 5.31 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.92 Total: -22.17 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.08 Total: -35.77 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.46 Total: -7.75 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.59 -8.52 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695796443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.041 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds