Wall clock time and date at job start Mon Mar 30 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 C 1.52998 * 109.46938 * 240.00014 * 2 1 3 5 5 C 1.50703 * 109.46706 * 177.41679 * 4 2 1 6 6 H 1.08003 * 120.00284 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00047 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00149 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46936 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47300 * 120.00176 * 9 7 5 12 12 H 1.48507 * 109.47184 * 240.00350 * 9 7 5 13 13 N 1.46894 * 109.46999 * 120.00126 * 2 1 3 14 14 C 1.46431 * 110.99909 * 263.99911 * 13 2 1 15 15 C 1.53373 * 108.66515 * 72.19280 * 14 13 2 16 16 C 1.53046 * 107.93426 * 68.23210 * 15 14 13 17 17 H 1.08996 * 109.43655 * 72.71259 * 16 15 14 18 18 O 1.42900 * 109.44165 * 192.63860 * 16 15 14 19 19 C 1.50802 * 109.65252 * 312.69466 * 16 15 14 20 20 C 1.38620 * 118.11853 * 195.75216 * 19 16 15 21 21 C 1.38051 * 120.48212 * 180.70704 * 20 19 16 22 22 C 1.38317 * 119.88838 * 359.40396 * 21 20 19 23 23 C 1.37805 * 119.95527 * 0.14554 * 22 21 20 24 24 C 1.38374 * 122.01727 * 15.66315 * 19 16 15 25 25 H 1.08996 * 109.47179 * 64.50098 * 1 2 3 26 26 H 1.09007 * 109.47039 * 184.49167 * 1 2 3 27 27 H 1.08999 * 109.47435 * 304.49426 * 1 2 3 28 28 H 1.08998 * 109.47306 * 297.41634 * 4 2 1 29 29 H 1.08998 * 109.47501 * 57.41697 * 4 2 1 30 30 H 0.96996 * 120.00348 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.60475 * 191.95084 * 14 13 2 32 32 H 1.09002 * 109.60444 * 312.43688 * 14 13 2 33 33 H 1.09005 * 109.77146 * 187.84409 * 15 14 13 34 34 H 1.09005 * 109.76900 * 308.57141 * 15 14 13 35 35 H 0.96695 * 113.99996 * 180.02562 * 18 16 15 36 36 H 1.07999 * 119.76263 * 0.43357 * 20 19 16 37 37 H 1.07998 * 120.05834 * 179.68106 * 21 20 19 38 38 H 1.08005 * 120.02406 * 180.17064 * 22 21 20 39 39 H 1.07998 * 119.79353 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5457 -0.6660 -1.2816 6 1 4.0849 -0.1668 -0.4901 7 6 4.2349 -1.2537 -2.3212 8 7 3.5783 -1.8620 -3.2848 9 14 6.1012 -1.1858 -2.3610 10 1 6.5952 -0.4489 -1.1701 11 1 6.6471 -2.5668 -2.3508 12 1 6.5450 -0.4872 -3.5940 13 7 2.0197 -0.6925 1.1994 14 6 2.3293 0.2614 2.2664 15 6 1.0133 0.8125 2.8292 16 6 0.2993 -0.3270 3.5599 17 1 0.8183 -0.5400 4.4945 18 8 -1.0477 0.0585 3.8410 19 6 0.2978 -1.5621 2.6947 20 6 -0.5737 -2.5888 3.0232 21 6 -0.6054 -3.7473 2.2731 22 6 0.2287 -3.8825 1.1781 23 6 1.0912 -2.8623 0.8400 24 6 1.1315 -1.6904 1.5978 25 1 -0.3633 0.4424 -0.9275 26 1 -0.3633 -1.0246 0.0805 27 1 -0.3634 0.5820 0.8470 28 1 1.7150 -1.7614 -1.2264 29 1 1.6394 -0.2349 -2.1386 30 1 4.0631 -2.2751 -4.0163 31 1 2.8831 -0.2429 3.0583 32 1 2.9261 1.0797 1.8635 33 1 1.2217 1.6242 3.5263 34 1 0.3882 1.1779 2.0144 35 1 -1.5614 -0.6169 4.3047 36 1 -1.2296 -2.4834 3.8746 37 1 -1.2835 -4.5450 2.5382 38 1 0.2038 -4.7869 0.5881 39 1 1.7411 -2.9705 -0.0158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695796443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:11 Heat of formation + Delta-G solvation = -32.463287 kcal Electronic energy + Delta-G solvation = -20604.177741 eV Core-core repulsion = 17703.833878 eV Total energy + Delta-G solvation = -2900.343863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.01293 -38.29554 -37.86868 -35.34145 -33.73787 -31.93586 -31.25193 -30.15858 -29.29044 -25.53327 -25.01705 -24.00715 -22.99524 -21.79501 -20.15245 -18.79945 -18.27694 -17.24692 -17.06146 -16.89692 -16.39137 -16.00179 -15.26177 -15.25906 -14.66516 -14.43618 -14.17704 -13.80312 -13.62060 -13.44626 -13.37028 -13.15336 -12.94978 -12.78404 -12.60662 -12.48413 -12.29170 -11.98894 -11.90183 -11.47650 -11.10840 -11.04511 -10.94839 -10.47230 -10.00496 -9.63006 -8.60241 -8.09927 -6.14692 0.45704 0.55951 1.39974 1.41148 1.53452 2.46400 2.79867 2.98272 3.25317 3.41832 3.72406 3.82071 3.94720 4.10133 4.23370 4.28724 4.30169 4.45406 4.45784 4.52846 4.66709 4.73735 4.76621 4.84938 4.91192 4.97893 5.10070 5.18227 5.22456 5.35485 5.48536 5.50062 5.55807 5.70547 5.77594 5.91560 6.04755 6.28047 6.44276 6.72088 6.82403 6.98698 7.50574 9.02279 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.006741 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.306890 B = 4152.685972 C = 4649.330257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H 0.071 0.929 4 C 0.032 3.968 5 C -0.497 4.497 6 H 0.058 0.942 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.502 5.502 14 C 0.059 3.941 15 C -0.156 4.156 16 C 0.160 3.840 17 H 0.082 0.918 18 O -0.568 6.568 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.141 4.141 22 C -0.114 4.114 23 C -0.149 4.149 24 C 0.135 3.865 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.007 0.993 29 H -0.011 1.011 30 H 0.258 0.742 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.391 0.609 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.128 0.872 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 0.664 16.187 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 H 0.089 0.911 4 C -0.005 4.005 5 C -0.535 4.535 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.781 3.219 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.218 5.218 14 C -0.068 4.068 15 C -0.195 4.195 16 C 0.101 3.899 17 H 0.099 0.901 18 O -0.376 6.376 19 C -0.177 4.177 20 C -0.118 4.118 21 C -0.159 4.159 22 C -0.133 4.133 23 C -0.169 4.169 24 C 0.038 3.962 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.025 0.975 29 H 0.007 0.993 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.241 0.759 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.165 0.961 15.594 17.629 hybrid contribution 0.410 -0.495 -0.498 0.813 sum -7.755 0.466 15.096 16.978 Atomic orbital electron populations 1.22623 0.96573 1.01817 1.01965 1.21667 0.92265 0.96372 0.89568 0.91121 1.19199 0.95309 0.95048 0.90963 1.21480 0.92823 1.33204 1.06026 0.92382 1.25832 1.02789 0.95740 0.95687 1.70103 1.36876 1.38804 1.12397 0.85542 0.80797 0.77550 0.77991 1.18810 1.21129 1.20797 1.58461 1.43044 1.13849 1.06421 1.22307 0.96320 0.94988 0.93169 1.22392 0.97244 0.98257 1.01569 1.20487 0.83611 0.90155 0.95606 0.90053 1.86526 1.23739 1.46323 1.81050 1.20801 0.98097 0.98888 0.99904 1.21150 0.97930 0.92465 1.00301 1.21267 1.00200 0.98948 0.95470 1.21222 0.95834 0.98303 0.97939 1.21404 1.00881 0.93892 1.00726 1.18490 0.90999 0.92424 0.94322 0.92695 0.93235 0.90956 0.97523 0.99318 0.93327 0.89787 0.89475 0.88522 0.90868 0.75856 0.82902 0.83207 0.85371 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.35 7.98 71.98 0.57 -5.78 16 2 C 0.11 4.45 1.96 44.92 0.09 4.53 16 3 H 0.07 2.89 7.44 -2.39 -0.02 2.87 16 4 C 0.03 1.70 4.43 29.85 0.13 1.83 16 5 C -0.50 -28.30 8.78 25.60 0.22 -28.08 16 6 H 0.06 3.23 7.73 -2.91 -0.02 3.21 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 8 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 9 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 10 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 N -0.50 -19.40 4.03 -671.98 -2.71 -22.11 16 14 C 0.06 1.80 5.73 86.52 0.50 2.30 16 15 C -0.16 -4.00 5.43 30.73 0.17 -3.83 16 16 C 0.16 3.77 3.59 29.90 0.11 3.88 16 17 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 18 O -0.57 -12.19 13.19 -148.98 -1.97 -14.16 16 19 C -0.17 -4.91 5.22 -19.71 -0.10 -5.01 16 20 C -0.10 -2.31 9.22 22.32 0.21 -2.10 16 21 C -0.14 -3.42 10.05 22.24 0.22 -3.20 16 22 C -0.11 -3.58 10.03 22.19 0.22 -3.36 16 23 C -0.15 -5.85 8.02 22.50 0.18 -5.67 16 24 C 0.13 4.86 3.25 38.30 0.12 4.98 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.93 5.93 -2.38 -0.01 1.91 16 27 H 0.07 2.40 5.13 -2.39 -0.01 2.39 16 28 H 0.01 0.38 5.30 -2.39 -0.01 0.36 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.08 2.35 8.11 -2.39 -0.02 2.33 16 32 H 0.09 2.60 7.72 -2.39 -0.02 2.58 16 33 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.07 2.12 4.65 -2.38 -0.01 2.11 16 35 H 0.39 4.99 7.47 -74.06 -0.55 4.44 16 36 H 0.15 2.17 6.76 -2.91 -0.02 2.15 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.10 4.76 5.96 -2.91 -0.02 4.74 16 Total: -1.00 -69.07 299.72 1.25 -67.82 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.51 Total: 17.85 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 3.11 Total: -39.30 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.42 Total: -79.97 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.97 Total: -14.16 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.07 1.25 -67.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695796443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.354 kcal (2) G-P(sol) polarization free energy of solvation -69.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds