Wall clock time and date at job start Mon Mar 30 2020 06:21:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.46678 * 2 1
4 4 C 1.52998 * 109.46938 * 240.00014 * 2 1 3
5 5 C 1.50703 * 109.46706 * 177.41679 * 4 2 1
6 6 H 1.08003 * 120.00284 * 0.02562 * 5 4 2
7 7 C 1.37880 * 120.00047 * 179.97438 * 5 4 2
8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 4
9 9 Si 1.86795 * 120.00149 * 180.02562 * 7 5 4
10 10 H 1.48499 * 109.46936 * 359.97438 * 9 7 5
11 11 H 1.48502 * 109.47300 * 120.00176 * 9 7 5
12 12 H 1.48507 * 109.47184 * 240.00350 * 9 7 5
13 13 N 1.46894 * 109.46999 * 120.00126 * 2 1 3
14 14 C 1.46431 * 110.99909 * 263.99911 * 13 2 1
15 15 C 1.53373 * 108.66515 * 72.19280 * 14 13 2
16 16 C 1.53046 * 107.93426 * 68.23210 * 15 14 13
17 17 H 1.08996 * 109.43655 * 72.71259 * 16 15 14
18 18 O 1.42900 * 109.44165 * 192.63860 * 16 15 14
19 19 C 1.50802 * 109.65252 * 312.69466 * 16 15 14
20 20 C 1.38620 * 118.11853 * 195.75216 * 19 16 15
21 21 C 1.38051 * 120.48212 * 180.70704 * 20 19 16
22 22 C 1.38317 * 119.88838 * 359.40396 * 21 20 19
23 23 C 1.37805 * 119.95527 * 0.14554 * 22 21 20
24 24 C 1.38374 * 122.01727 * 15.66315 * 19 16 15
25 25 H 1.08996 * 109.47179 * 64.50098 * 1 2 3
26 26 H 1.09007 * 109.47039 * 184.49167 * 1 2 3
27 27 H 1.08999 * 109.47435 * 304.49426 * 1 2 3
28 28 H 1.08998 * 109.47306 * 297.41634 * 4 2 1
29 29 H 1.08998 * 109.47501 * 57.41697 * 4 2 1
30 30 H 0.96996 * 120.00348 * 179.97438 * 8 7 5
31 31 H 1.09001 * 109.60475 * 191.95084 * 14 13 2
32 32 H 1.09002 * 109.60444 * 312.43688 * 14 13 2
33 33 H 1.09005 * 109.77146 * 187.84409 * 15 14 13
34 34 H 1.09005 * 109.76900 * 308.57141 * 15 14 13
35 35 H 0.96695 * 113.99996 * 180.02562 * 18 16 15
36 36 H 1.07999 * 119.76263 * 0.43357 * 20 19 16
37 37 H 1.07998 * 120.05834 * 179.68106 * 21 20 19
38 38 H 1.08005 * 120.02406 * 180.17064 * 22 21 20
39 39 H 1.07998 * 119.79353 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5457 -0.6660 -1.2816
6 1 4.0849 -0.1668 -0.4901
7 6 4.2349 -1.2537 -2.3212
8 7 3.5783 -1.8620 -3.2848
9 14 6.1012 -1.1858 -2.3610
10 1 6.5952 -0.4489 -1.1701
11 1 6.6471 -2.5668 -2.3508
12 1 6.5450 -0.4872 -3.5940
13 7 2.0197 -0.6925 1.1994
14 6 2.3293 0.2614 2.2664
15 6 1.0133 0.8125 2.8292
16 6 0.2993 -0.3270 3.5599
17 1 0.8183 -0.5400 4.4945
18 8 -1.0477 0.0585 3.8410
19 6 0.2978 -1.5621 2.6947
20 6 -0.5737 -2.5888 3.0232
21 6 -0.6054 -3.7473 2.2731
22 6 0.2287 -3.8825 1.1781
23 6 1.0912 -2.8623 0.8400
24 6 1.1315 -1.6904 1.5978
25 1 -0.3633 0.4424 -0.9275
26 1 -0.3633 -1.0246 0.0805
27 1 -0.3634 0.5820 0.8470
28 1 1.7150 -1.7614 -1.2264
29 1 1.6394 -0.2349 -2.1386
30 1 4.0631 -2.2751 -4.0163
31 1 2.8831 -0.2429 3.0583
32 1 2.9261 1.0797 1.8635
33 1 1.2217 1.6242 3.5263
34 1 0.3882 1.1779 2.0144
35 1 -1.5614 -0.6169 4.3047
36 1 -1.2296 -2.4834 3.8746
37 1 -1.2835 -4.5450 2.5382
38 1 0.2038 -4.7869 0.5881
39 1 1.7411 -2.9705 -0.0158
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695796443.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:21:11
Heat of formation + Delta-G solvation = -32.463287 kcal
Electronic energy + Delta-G solvation = -20604.177741 eV
Core-core repulsion = 17703.833878 eV
Total energy + Delta-G solvation = -2900.343863 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.01293 -38.29554 -37.86868 -35.34145 -33.73787 -31.93586 -31.25193 -30.15858
-29.29044 -25.53327 -25.01705 -24.00715 -22.99524 -21.79501 -20.15245 -18.79945
-18.27694 -17.24692 -17.06146 -16.89692 -16.39137 -16.00179 -15.26177 -15.25906
-14.66516 -14.43618 -14.17704 -13.80312 -13.62060 -13.44626 -13.37028 -13.15336
-12.94978 -12.78404 -12.60662 -12.48413 -12.29170 -11.98894 -11.90183 -11.47650
-11.10840 -11.04511 -10.94839 -10.47230 -10.00496 -9.63006 -8.60241 -8.09927
-6.14692 0.45704 0.55951 1.39974 1.41148 1.53452 2.46400 2.79867
2.98272 3.25317 3.41832 3.72406 3.82071 3.94720 4.10133 4.23370
4.28724 4.30169 4.45406 4.45784 4.52846 4.66709 4.73735 4.76621
4.84938 4.91192 4.97893 5.10070 5.18227 5.22456 5.35485 5.48536
5.50062 5.55807 5.70547 5.77594 5.91560 6.04755 6.28047 6.44276
6.72088 6.82403 6.98698 7.50574 9.02279
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.024701 B = 0.006741 C = 0.006021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1133.306890 B = 4152.685972 C = 4649.330257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.107 3.893
3 H 0.071 0.929
4 C 0.032 3.968
5 C -0.497 4.497
6 H 0.058 0.942
7 C -0.005 4.005
8 N -0.940 5.940
9 Si 0.955 3.045
10 H -0.264 1.264
11 H -0.285 1.285
12 H -0.282 1.282
13 N -0.502 5.502
14 C 0.059 3.941
15 C -0.156 4.156
16 C 0.160 3.840
17 H 0.082 0.918
18 O -0.568 6.568
19 C -0.174 4.174
20 C -0.100 4.100
21 C -0.141 4.141
22 C -0.114 4.114
23 C -0.149 4.149
24 C 0.135 3.865
25 H 0.054 0.946
26 H 0.049 0.951
27 H 0.072 0.928
28 H 0.007 0.993
29 H -0.011 1.011
30 H 0.258 0.742
31 H 0.084 0.916
32 H 0.087 0.913
33 H 0.096 0.904
34 H 0.073 0.927
35 H 0.391 0.609
36 H 0.153 0.847
37 H 0.150 0.850
38 H 0.128 0.872
39 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.865 0.664 16.187 18.467
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.001 3.999
3 H 0.089 0.911
4 C -0.005 4.005
5 C -0.535 4.535
6 H 0.076 0.924
7 C -0.200 4.200
8 N -0.582 5.582
9 Si 0.781 3.219
10 H -0.188 1.188
11 H -0.211 1.211
12 H -0.208 1.208
13 N -0.218 5.218
14 C -0.068 4.068
15 C -0.195 4.195
16 C 0.101 3.899
17 H 0.099 0.901
18 O -0.376 6.376
19 C -0.177 4.177
20 C -0.118 4.118
21 C -0.159 4.159
22 C -0.133 4.133
23 C -0.169 4.169
24 C 0.038 3.962
25 H 0.073 0.927
26 H 0.068 0.932
27 H 0.090 0.910
28 H 0.025 0.975
29 H 0.007 0.993
30 H 0.067 0.933
31 H 0.102 0.898
32 H 0.105 0.895
33 H 0.115 0.885
34 H 0.091 0.909
35 H 0.241 0.759
36 H 0.171 0.829
37 H 0.168 0.832
38 H 0.146 0.854
39 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -8.165 0.961 15.594 17.629
hybrid contribution 0.410 -0.495 -0.498 0.813
sum -7.755 0.466 15.096 16.978
Atomic orbital electron populations
1.22623 0.96573 1.01817 1.01965 1.21667 0.92265 0.96372 0.89568
0.91121 1.19199 0.95309 0.95048 0.90963 1.21480 0.92823 1.33204
1.06026 0.92382 1.25832 1.02789 0.95740 0.95687 1.70103 1.36876
1.38804 1.12397 0.85542 0.80797 0.77550 0.77991 1.18810 1.21129
1.20797 1.58461 1.43044 1.13849 1.06421 1.22307 0.96320 0.94988
0.93169 1.22392 0.97244 0.98257 1.01569 1.20487 0.83611 0.90155
0.95606 0.90053 1.86526 1.23739 1.46323 1.81050 1.20801 0.98097
0.98888 0.99904 1.21150 0.97930 0.92465 1.00301 1.21267 1.00200
0.98948 0.95470 1.21222 0.95834 0.98303 0.97939 1.21404 1.00881
0.93892 1.00726 1.18490 0.90999 0.92424 0.94322 0.92695 0.93235
0.90956 0.97523 0.99318 0.93327 0.89787 0.89475 0.88522 0.90868
0.75856 0.82902 0.83207 0.85371 0.88278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -6.35 7.98 71.98 0.57 -5.78 16
2 C 0.11 4.45 1.96 44.92 0.09 4.53 16
3 H 0.07 2.89 7.44 -2.39 -0.02 2.87 16
4 C 0.03 1.70 4.43 29.85 0.13 1.83 16
5 C -0.50 -28.30 8.78 25.60 0.22 -28.08 16
6 H 0.06 3.23 7.73 -2.91 -0.02 3.21 16
7 C 0.00 -0.27 5.46 84.65 0.46 0.20 16
8 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16
9 Si 0.95 45.74 29.54 68.60 2.03 47.76 16
10 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16
11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16
12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
13 N -0.50 -19.40 4.03 -671.98 -2.71 -22.11 16
14 C 0.06 1.80 5.73 86.52 0.50 2.30 16
15 C -0.16 -4.00 5.43 30.73 0.17 -3.83 16
16 C 0.16 3.77 3.59 29.90 0.11 3.88 16
17 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
18 O -0.57 -12.19 13.19 -148.98 -1.97 -14.16 16
19 C -0.17 -4.91 5.22 -19.71 -0.10 -5.01 16
20 C -0.10 -2.31 9.22 22.32 0.21 -2.10 16
21 C -0.14 -3.42 10.05 22.24 0.22 -3.20 16
22 C -0.11 -3.58 10.03 22.19 0.22 -3.36 16
23 C -0.15 -5.85 8.02 22.50 0.18 -5.67 16
24 C 0.13 4.86 3.25 38.30 0.12 4.98 16
25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
26 H 0.05 1.93 5.93 -2.38 -0.01 1.91 16
27 H 0.07 2.40 5.13 -2.39 -0.01 2.39 16
28 H 0.01 0.38 5.30 -2.39 -0.01 0.36 16
29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16
30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16
31 H 0.08 2.35 8.11 -2.39 -0.02 2.33 16
32 H 0.09 2.60 7.72 -2.39 -0.02 2.58 16
33 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16
34 H 0.07 2.12 4.65 -2.38 -0.01 2.11 16
35 H 0.39 4.99 7.47 -74.06 -0.55 4.44 16
36 H 0.15 2.17 6.76 -2.91 -0.02 2.15 16
37 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16
38 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16
39 H 0.10 4.76 5.96 -2.91 -0.02 4.74 16
Total: -1.00 -69.07 299.72 1.25 -67.82
By element:
Atomic # 1 Polarization: 17.34 SS G_CDS: 0.51 Total: 17.85 kcal
Atomic # 6 Polarization: -42.40 SS G_CDS: 3.11 Total: -39.30 kcal
Atomic # 7 Polarization: -77.55 SS G_CDS: -2.42 Total: -79.97 kcal
Atomic # 8 Polarization: -12.19 SS G_CDS: -1.97 Total: -14.16 kcal
Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal
Total: -69.07 1.25 -67.82 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695796443.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.354 kcal
(2) G-P(sol) polarization free energy of solvation -69.067 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds