Wall clock time and date at job start Mon Mar 30 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46896 * 2 1 4 4 C 1.52999 * 109.47548 * 239.99795 * 2 1 3 5 5 C 1.50697 * 109.47297 * 174.28841 * 4 2 1 6 6 H 1.07996 * 120.00063 * 355.29850 * 5 4 2 7 7 C 1.37883 * 119.99978 * 175.30021 * 5 4 2 8 8 N 1.31509 * 119.99634 * 0.02562 * 7 5 4 9 9 Si 1.86789 * 119.99991 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47380 * 270.00244 * 9 7 5 11 11 H 1.48501 * 109.47485 * 30.00283 * 9 7 5 12 12 H 1.48501 * 109.47490 * 149.99975 * 9 7 5 13 13 N 1.46903 * 109.47172 * 119.99819 * 2 1 3 14 14 C 1.46421 * 110.99914 * 94.08873 * 13 2 1 15 15 C 1.53391 * 108.66294 * 287.75166 * 14 13 2 16 16 C 1.53050 * 107.91204 * 291.72731 * 15 14 13 17 17 H 1.09000 * 109.43916 * 287.26785 * 16 15 14 18 18 O 1.42894 * 109.43955 * 167.37534 * 16 15 14 19 19 C 1.50801 * 109.64966 * 47.32148 * 16 15 14 20 20 C 1.38618 * 118.12292 * 164.56394 * 19 16 15 21 21 C 1.38050 * 120.48963 * 179.63845 * 20 19 16 22 22 C 1.38315 * 119.88927 * 0.02562 * 21 20 19 23 23 C 1.37815 * 119.95208 * 0.13263 * 22 21 20 24 24 C 1.38378 * 122.01637 * 344.43312 * 19 16 15 25 25 H 1.09000 * 109.47475 * 309.50575 * 1 2 3 26 26 H 1.08999 * 109.47006 * 69.50670 * 1 2 3 27 27 H 1.09004 * 109.47000 * 189.50636 * 1 2 3 28 28 H 1.08999 * 109.46798 * 54.28571 * 4 2 1 29 29 H 1.09002 * 109.47100 * 294.29039 * 4 2 1 30 30 H 0.97001 * 120.00492 * 359.97438 * 8 7 5 31 31 H 1.09002 * 109.60347 * 47.50595 * 14 13 2 32 32 H 1.09007 * 109.60522 * 167.99500 * 14 13 2 33 33 H 1.08997 * 109.77122 * 172.12736 * 15 14 13 34 34 H 1.08994 * 109.77010 * 51.32925 * 15 14 13 35 35 H 0.96700 * 113.99865 * 179.82072 * 18 16 15 36 36 H 1.08002 * 119.74786 * 359.62294 * 20 19 16 37 37 H 1.07999 * 120.05216 * 180.02562 * 21 20 19 38 38 H 1.07995 * 120.02277 * 180.14481 * 22 21 20 39 39 H 1.07992 * 119.78888 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5404 -0.6000 -1.3219 6 1 4.0693 0.0009 -0.5969 7 6 4.2379 -1.2561 -2.3139 8 7 3.5937 -1.9873 -3.1970 9 14 6.0974 -1.1052 -2.4045 10 1 6.4590 0.0533 -3.2603 11 1 6.6447 -0.9016 -1.0390 12 1 6.6672 -2.3471 -2.9859 13 7 2.0197 -0.6925 1.1995 14 6 2.2865 -2.1044 0.9181 15 6 0.9471 -2.8336 0.7527 16 6 0.2555 -2.8628 2.1177 17 1 0.7664 -3.5728 2.7681 18 8 -1.1059 -3.2646 1.9525 19 6 0.3017 -1.4896 2.7391 20 6 -0.5400 -1.2279 3.8090 21 6 -0.5326 0.0102 4.4195 22 6 0.3194 0.9991 3.9622 23 6 1.1568 0.7474 2.8969 24 6 1.1530 -0.5025 2.2748 25 1 -0.3634 0.6537 0.7929 26 1 -0.3633 0.3598 -0.9626 27 1 -0.3633 -1.0136 0.1697 28 1 1.5956 -0.2699 -2.1362 29 1 1.7627 -1.7742 -1.1995 30 1 2.6279 -2.0654 -3.1502 31 1 2.8660 -2.1909 -0.0011 32 1 2.8424 -2.5438 1.7464 33 1 1.1221 -3.8520 0.4061 34 1 0.3236 -2.3009 0.0347 35 1 -1.6061 -3.3081 2.7789 36 1 -1.2067 -1.9984 4.1673 37 1 -1.1911 0.2063 5.2528 38 1 0.3286 1.9677 4.4397 39 1 1.8213 1.5213 2.5423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695796454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:15 Heat of formation + Delta-G solvation = -9.144124 kcal Electronic energy + Delta-G solvation = -20734.719692 eV Core-core repulsion = 17835.387024 eV Total energy + Delta-G solvation = -2899.332669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87840 -37.38701 -36.78722 -33.49642 -32.21741 -30.87571 -30.14347 -28.84584 -27.05700 -24.22591 -23.17680 -22.61353 -22.01742 -20.03063 -18.97295 -17.77134 -16.83928 -16.16864 -16.02434 -15.66992 -14.55069 -14.20771 -13.92895 -13.66848 -13.51571 -13.20594 -12.74240 -12.66571 -12.27826 -12.08148 -11.98260 -11.65955 -11.50880 -11.18211 -11.10178 -10.90072 -10.66497 -10.32641 -10.10278 -9.99191 -9.84782 -9.43711 -8.89667 -8.61205 -8.55111 -8.34816 -7.35522 -6.36540 -4.05347 1.49806 1.59133 3.44984 3.47877 3.64028 3.86035 4.27193 4.51903 4.55652 4.80507 4.93041 5.12874 5.18314 5.33244 5.40000 5.51149 5.64627 5.69859 5.77362 5.81536 5.89727 5.92942 5.97139 6.17831 6.24678 6.40965 6.47464 6.50969 6.59037 6.67584 6.75999 6.78598 6.89180 7.04846 7.22822 7.37711 7.65166 7.71515 7.99376 8.20233 8.50452 8.87281 9.63699 11.02879 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.006538 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.701092 B = 4281.669476 C = 4697.512410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.103 3.897 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.588 4.588 6 H 0.057 0.943 7 C 0.015 3.985 8 N -0.913 5.913 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.484 5.484 14 C 0.043 3.957 15 C -0.159 4.159 16 C 0.150 3.850 17 H 0.061 0.939 18 O -0.558 6.558 19 C -0.164 4.164 20 C -0.101 4.101 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.130 4.130 24 C 0.153 3.847 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.268 0.732 31 H 0.143 0.857 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.369 0.631 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 1.158 13.440 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.002 4.002 3 H 0.092 0.908 4 C -0.041 4.041 5 C -0.626 4.626 6 H 0.075 0.925 7 C -0.189 4.189 8 N -0.550 5.550 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.199 5.199 14 C -0.083 4.083 15 C -0.198 4.198 16 C 0.091 3.909 17 H 0.078 0.922 18 O -0.364 6.364 19 C -0.167 4.167 20 C -0.120 4.120 21 C -0.170 4.170 22 C -0.124 4.124 23 C -0.150 4.150 24 C 0.054 3.946 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.217 0.783 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.684 0.859 12.001 13.307 hybrid contribution -2.265 0.291 1.461 2.711 sum -7.949 1.150 13.462 15.676 Atomic orbital electron populations 1.22850 0.98255 1.02420 1.01329 1.21785 0.90876 0.98495 0.89054 0.90843 1.19775 0.97551 0.95801 0.90948 1.22003 0.91370 1.33457 1.15818 0.92508 1.25809 1.06740 0.93627 0.92741 1.70773 1.10680 1.38015 1.35506 0.83542 0.74614 0.76416 0.75739 1.21605 1.21344 1.21167 1.58700 1.41866 1.14392 1.04897 1.22689 0.95362 0.84585 1.05701 1.22542 0.98783 1.02889 0.95565 1.20682 0.82565 0.90367 0.97259 0.92167 1.86601 1.23227 1.90626 1.35933 1.20631 0.98158 0.98308 0.99646 1.20738 0.98546 0.97115 0.95552 1.20854 1.01064 0.93765 1.01283 1.20938 0.96021 0.98855 0.96548 1.21103 1.00378 0.96856 0.96630 1.18697 0.89621 0.92974 0.93260 0.93311 0.92574 0.91367 0.97005 0.95530 0.92145 0.83957 0.91932 0.90715 0.89009 0.78345 0.87015 0.86608 0.86341 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 7.85 37.16 0.29 -3.23 16 2 C 0.10 2.11 2.53 -67.71 -0.17 1.94 16 3 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 4 C 0.00 -0.09 3.16 -27.88 -0.09 -0.18 16 5 C -0.59 -15.69 7.12 -34.44 -0.25 -15.94 16 6 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 8 N -0.91 -26.84 13.65 55.43 0.76 -26.09 16 9 Si 1.07 24.82 29.90 -169.99 -5.08 19.74 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.48 -9.49 4.57 -163.73 -0.75 -10.24 16 14 C 0.04 0.85 5.17 -3.88 -0.02 0.83 16 15 C -0.16 -2.85 4.63 -26.50 -0.12 -2.97 16 16 C 0.15 2.31 3.48 -27.81 -0.10 2.22 16 17 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 18 O -0.56 -8.11 13.19 -35.23 -0.46 -8.57 16 19 C -0.16 -2.57 4.97 -104.38 -0.52 -3.09 16 20 C -0.10 -1.32 9.22 -39.51 -0.36 -1.69 16 21 C -0.15 -1.87 10.05 -39.62 -0.40 -2.27 16 22 C -0.10 -1.38 10.04 -39.71 -0.40 -1.78 16 23 C -0.13 -2.04 8.87 -39.22 -0.35 -2.39 16 24 C 0.15 2.65 3.43 -83.85 -0.29 2.36 16 25 H 0.05 0.85 6.79 -51.93 -0.35 0.50 16 26 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.07 1.29 4.26 -51.93 -0.22 1.07 16 28 H 0.01 0.30 8.10 -51.93 -0.42 -0.12 16 29 H 0.03 0.65 4.47 -51.93 -0.23 0.42 16 30 H 0.27 7.85 7.19 -40.82 -0.29 7.56 16 31 H 0.14 3.28 4.29 -51.93 -0.22 3.06 16 32 H 0.06 1.15 8.11 -51.92 -0.42 0.73 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.79 3.93 -51.93 -0.20 1.59 16 35 H 0.37 3.72 7.49 45.56 0.34 4.06 16 36 H 0.11 1.13 6.78 -52.49 -0.36 0.77 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -29.64 294.44 -8.51 -38.15 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.54 Total: 8.44 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.86 Total: -25.87 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.01 Total: -36.32 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.46 Total: -8.57 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.64 -8.51 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695796454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.009 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds