Wall clock time and date at job start Mon Mar 30 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46821 * 2 1 4 4 C 1.52996 * 109.47470 * 120.00439 * 2 1 3 5 5 C 1.50701 * 109.47291 * 182.43999 * 4 2 1 6 6 H 1.08002 * 119.99932 * 355.90270 * 5 4 2 7 7 C 1.37882 * 119.99868 * 175.90141 * 5 4 2 8 8 N 1.31512 * 119.99569 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46795 * 89.99766 * 9 7 5 11 11 H 1.48493 * 109.47272 * 210.00055 * 9 7 5 12 12 H 1.48506 * 109.47056 * 330.00129 * 9 7 5 13 13 N 1.46902 * 109.47059 * 240.00391 * 2 1 3 14 14 C 1.46419 * 111.00206 * 297.81347 * 13 2 1 15 15 C 1.53372 * 108.67208 * 178.92006 * 14 13 2 16 16 C 1.53045 * 107.93593 * 291.79532 * 15 14 13 17 17 H 1.08996 * 109.44137 * 167.40095 * 16 15 14 18 18 O 1.42898 * 109.44091 * 287.29301 * 16 15 14 19 19 C 1.50804 * 109.65119 * 47.34532 * 16 15 14 20 20 C 1.38615 * 118.12368 * 164.56171 * 19 16 15 21 21 C 1.38052 * 120.48591 * 179.39141 * 20 19 16 22 22 C 1.38315 * 119.88885 * 0.25734 * 21 20 19 23 23 C 1.37810 * 119.94990 * 359.61706 * 22 21 20 24 24 C 1.38375 * 122.01328 * 344.19505 * 19 16 15 25 25 H 1.09007 * 109.46852 * 186.03007 * 1 2 3 26 26 H 1.08998 * 109.47373 * 306.02682 * 1 2 3 27 27 H 1.08997 * 109.47091 * 66.03671 * 1 2 3 28 28 H 1.09003 * 109.47074 * 302.44002 * 4 2 1 29 29 H 1.08998 * 109.47408 * 62.43690 * 4 2 1 30 30 H 0.97004 * 119.99809 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.60440 * 298.67960 * 14 13 2 32 32 H 1.09000 * 109.60196 * 59.16237 * 14 13 2 33 33 H 1.08998 * 109.76770 * 51.41297 * 15 14 13 34 34 H 1.09008 * 109.77002 * 172.13378 * 15 14 13 35 35 H 0.96698 * 113.99847 * 180.18846 * 18 16 15 36 36 H 1.07999 * 119.75619 * 359.40603 * 20 19 16 37 37 H 1.07999 * 120.05686 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.02144 * 179.88134 * 22 21 20 39 39 H 1.08003 * 119.78484 * 180.25913 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5459 -0.6691 1.2797 6 1 4.0878 -0.2298 0.4552 7 6 4.2316 -1.1822 2.3603 8 7 5.5457 -1.1362 2.3871 9 14 3.2943 -1.9413 3.7866 10 1 3.1014 -3.3922 3.5358 11 1 4.0657 -1.7541 5.0415 12 1 1.9704 -1.2811 3.9162 13 7 2.0196 -0.6924 -1.1995 14 6 1.5932 -2.0931 -1.2077 15 6 2.1085 -2.7558 -2.4913 16 6 1.3553 -2.1419 -3.6737 17 1 1.8485 -2.4239 -4.6039 18 8 0.0106 -2.6253 -3.6836 19 6 1.3476 -0.6394 -3.5451 20 6 1.0083 0.1101 -4.6608 21 6 0.9735 1.4886 -4.5943 22 6 1.2840 2.1295 -3.4086 23 6 1.6196 1.3909 -2.2946 24 6 1.6589 -0.0032 -2.3564 25 1 -0.3633 -1.0221 0.1080 26 1 -0.3634 0.6044 0.8311 27 1 -0.3633 0.4174 -0.9391 28 1 1.6415 -0.2334 2.1386 29 1 1.7129 -1.7608 1.2275 30 1 6.0282 -1.4975 3.1471 31 1 2.0069 -2.6064 -0.3396 32 1 0.5048 -2.1442 -1.1813 33 1 3.1772 -2.5703 -2.5985 34 1 1.9229 -3.8292 -2.4522 35 1 -0.5264 -2.2793 -4.4096 36 1 0.7693 -0.3880 -5.5887 37 1 0.7087 2.0658 -5.4678 38 1 1.2593 3.2079 -3.3547 39 1 1.8575 1.8940 -1.3690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695796458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:17 Heat of formation + Delta-G solvation = -15.356588 kcal Electronic energy + Delta-G solvation = -20426.817261 eV Core-core repulsion = 17527.215200 eV Total energy + Delta-G solvation = -2899.602061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61123 -37.17732 -36.83386 -33.47302 -32.38258 -30.93172 -30.07558 -28.64587 -27.87344 -24.50452 -23.13232 -22.99527 -21.91246 -19.62458 -18.85936 -17.33198 -16.84155 -16.65779 -15.77547 -14.92710 -14.81561 -14.49334 -14.14735 -13.75555 -13.52855 -13.28041 -12.88779 -12.58577 -12.42011 -12.13046 -11.94233 -11.83449 -11.65778 -11.41602 -11.17087 -11.03416 -10.76537 -10.41773 -10.04257 -9.84731 -9.72295 -9.65344 -9.28961 -9.12316 -8.62340 -8.50476 -7.14775 -5.98859 -3.95321 1.56136 1.72676 3.30369 3.38797 3.40114 3.90399 4.25255 4.46887 4.51093 4.80698 4.94572 5.16672 5.20460 5.29896 5.33796 5.52971 5.58759 5.62094 5.73585 5.74829 5.81708 5.90512 5.94485 6.13927 6.18894 6.26951 6.35233 6.47101 6.50818 6.56995 6.62528 6.65380 6.79216 7.04362 7.08645 7.26060 7.63844 7.67040 7.80861 7.86760 8.61620 9.13338 9.63020 11.14625 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.006492 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.267949 B = 4311.980368 C = 4695.537825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.095 3.905 3 H 0.088 0.912 4 C -0.013 4.013 5 C -0.502 4.502 6 H 0.080 0.920 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.871 3.129 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.463 5.463 14 C 0.059 3.941 15 C -0.116 4.116 16 C 0.152 3.848 17 H 0.060 0.940 18 O -0.561 6.561 19 C -0.184 4.184 20 C -0.085 4.085 21 C -0.173 4.173 22 C -0.086 4.086 23 C -0.170 4.170 24 C 0.171 3.829 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.261 0.739 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.372 0.628 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 1.372 -12.633 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.010 4.010 3 H 0.105 0.895 4 C -0.050 4.050 5 C -0.540 4.540 6 H 0.098 0.902 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.699 3.301 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.172 5.172 14 C -0.067 4.067 15 C -0.154 4.154 16 C 0.094 3.906 17 H 0.078 0.922 18 O -0.366 6.366 19 C -0.188 4.188 20 C -0.104 4.104 21 C -0.193 4.193 22 C -0.105 4.105 23 C -0.191 4.191 24 C 0.068 3.932 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.218 0.782 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.381 0.915 -11.829 15.765 hybrid contribution -1.076 -0.026 0.241 1.103 sum -11.458 0.889 -11.589 16.321 Atomic orbital electron populations 1.22532 0.98129 1.01952 1.01579 1.21913 0.90851 0.98958 0.89257 0.89452 1.19805 0.98247 0.95199 0.91742 1.21053 0.88900 1.38753 1.05291 0.90164 1.25012 0.94671 0.95842 0.97993 1.69912 1.06329 1.46975 1.31065 0.86917 0.80453 0.80020 0.82693 1.20431 1.21473 1.19170 1.57890 1.55268 1.03101 1.00929 1.22155 0.98515 0.86938 0.99043 1.21794 1.00200 1.00213 0.93151 1.20576 0.83064 0.88335 0.98620 0.92222 1.86570 1.23405 1.71848 1.54793 1.20022 1.08448 0.96169 0.94152 1.20806 0.98709 0.94092 0.96803 1.20784 1.06200 0.94296 0.98008 1.20912 0.97618 0.99310 0.92665 1.21281 1.05390 0.92599 0.99854 1.18812 0.90820 0.92501 0.91026 0.92636 0.92033 0.93036 0.95582 0.96666 0.92911 0.88304 0.93145 0.89205 0.90197 0.78177 0.86927 0.86816 0.86476 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.46 37.16 0.31 -2.72 16 2 C 0.10 1.86 1.91 -67.71 -0.13 1.73 16 3 H 0.09 1.73 5.82 -51.93 -0.30 1.43 16 4 C -0.01 -0.29 3.20 -27.88 -0.09 -0.38 16 5 C -0.50 -13.88 9.35 -34.44 -0.32 -14.20 16 6 H 0.08 2.45 7.93 -52.49 -0.42 2.04 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 9 Si 0.87 21.39 27.55 -169.99 -4.68 16.71 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.26 6.43 56.52 0.36 -5.90 16 13 N -0.46 -8.92 4.13 -163.76 -0.68 -9.60 16 14 C 0.06 1.07 4.68 -3.89 -0.02 1.05 16 15 C -0.12 -1.82 5.86 -26.52 -0.16 -1.98 16 16 C 0.15 2.13 3.46 -27.81 -0.10 2.03 16 17 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 18 O -0.56 -7.43 12.95 -35.23 -0.46 -7.89 16 19 C -0.18 -2.79 5.35 -104.38 -0.56 -3.35 16 20 C -0.09 -1.10 9.52 -39.51 -0.38 -1.47 16 21 C -0.17 -2.19 10.05 -39.62 -0.40 -2.59 16 22 C -0.09 -1.18 10.04 -39.71 -0.40 -1.58 16 23 C -0.17 -2.76 8.24 -39.23 -0.32 -3.09 16 24 C 0.17 2.97 4.82 -83.85 -0.40 2.57 16 25 H 0.05 0.91 6.76 -51.92 -0.35 0.56 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.82 6.62 -51.93 -0.34 0.48 16 28 H 0.03 0.60 6.91 -51.93 -0.36 0.24 16 29 H 0.02 0.35 5.90 -51.93 -0.31 0.04 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.10 1.96 6.28 -51.93 -0.33 1.63 16 32 H 0.05 0.89 6.11 -51.93 -0.32 0.58 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 35 H 0.37 3.44 8.98 45.56 0.41 3.85 16 36 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.12 5.80 -52.48 -0.30 1.82 16 LS Contribution 301.78 15.07 4.55 4.55 Total: -1.00 -31.23 301.78 -8.30 -39.53 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.75 Total: 5.85 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -3.05 Total: -22.20 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.10 Total: -36.55 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.46 Total: -7.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.68 Total: 16.71 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.23 -8.30 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695796458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.171 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds