Wall clock time and date at job start Mon Mar 30 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46821 * 2 1 4 4 C 1.52996 * 109.47470 * 120.00439 * 2 1 3 5 5 C 1.50701 * 109.47291 * 182.43999 * 4 2 1 6 6 H 1.08002 * 119.99932 * 355.90270 * 5 4 2 7 7 C 1.37882 * 119.99868 * 175.90141 * 5 4 2 8 8 N 1.31512 * 119.99569 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46795 * 89.99766 * 9 7 5 11 11 H 1.48493 * 109.47272 * 210.00055 * 9 7 5 12 12 H 1.48506 * 109.47056 * 330.00129 * 9 7 5 13 13 N 1.46902 * 109.47059 * 240.00391 * 2 1 3 14 14 C 1.46419 * 111.00206 * 297.81347 * 13 2 1 15 15 C 1.53372 * 108.67208 * 178.92006 * 14 13 2 16 16 C 1.53045 * 107.93593 * 291.79532 * 15 14 13 17 17 H 1.08996 * 109.44137 * 167.40095 * 16 15 14 18 18 O 1.42898 * 109.44091 * 287.29301 * 16 15 14 19 19 C 1.50804 * 109.65119 * 47.34532 * 16 15 14 20 20 C 1.38615 * 118.12368 * 164.56171 * 19 16 15 21 21 C 1.38052 * 120.48591 * 179.39141 * 20 19 16 22 22 C 1.38315 * 119.88885 * 0.25734 * 21 20 19 23 23 C 1.37810 * 119.94990 * 359.61706 * 22 21 20 24 24 C 1.38375 * 122.01328 * 344.19505 * 19 16 15 25 25 H 1.09007 * 109.46852 * 186.03007 * 1 2 3 26 26 H 1.08998 * 109.47373 * 306.02682 * 1 2 3 27 27 H 1.08997 * 109.47091 * 66.03671 * 1 2 3 28 28 H 1.09003 * 109.47074 * 302.44002 * 4 2 1 29 29 H 1.08998 * 109.47408 * 62.43690 * 4 2 1 30 30 H 0.97004 * 119.99809 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.60440 * 298.67960 * 14 13 2 32 32 H 1.09000 * 109.60196 * 59.16237 * 14 13 2 33 33 H 1.08998 * 109.76770 * 51.41297 * 15 14 13 34 34 H 1.09008 * 109.77002 * 172.13378 * 15 14 13 35 35 H 0.96698 * 113.99847 * 180.18846 * 18 16 15 36 36 H 1.07999 * 119.75619 * 359.40603 * 20 19 16 37 37 H 1.07999 * 120.05686 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.02144 * 179.88134 * 22 21 20 39 39 H 1.08003 * 119.78484 * 180.25913 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5459 -0.6691 1.2797 6 1 4.0878 -0.2298 0.4552 7 6 4.2316 -1.1822 2.3603 8 7 5.5457 -1.1362 2.3871 9 14 3.2943 -1.9413 3.7866 10 1 3.1014 -3.3922 3.5358 11 1 4.0657 -1.7541 5.0415 12 1 1.9704 -1.2811 3.9162 13 7 2.0196 -0.6924 -1.1995 14 6 1.5932 -2.0931 -1.2077 15 6 2.1085 -2.7558 -2.4913 16 6 1.3553 -2.1419 -3.6737 17 1 1.8485 -2.4239 -4.6039 18 8 0.0106 -2.6253 -3.6836 19 6 1.3476 -0.6394 -3.5451 20 6 1.0083 0.1101 -4.6608 21 6 0.9735 1.4886 -4.5943 22 6 1.2840 2.1295 -3.4086 23 6 1.6196 1.3909 -2.2946 24 6 1.6589 -0.0032 -2.3564 25 1 -0.3633 -1.0221 0.1080 26 1 -0.3634 0.6044 0.8311 27 1 -0.3633 0.4174 -0.9391 28 1 1.6415 -0.2334 2.1386 29 1 1.7129 -1.7608 1.2275 30 1 6.0282 -1.4975 3.1471 31 1 2.0069 -2.6064 -0.3396 32 1 0.5048 -2.1442 -1.1813 33 1 3.1772 -2.5703 -2.5985 34 1 1.9229 -3.8292 -2.4522 35 1 -0.5264 -2.2793 -4.4096 36 1 0.7693 -0.3880 -5.5887 37 1 0.7087 2.0658 -5.4678 38 1 1.2593 3.2079 -3.3547 39 1 1.8575 1.8940 -1.3690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695796458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:16 Heat of formation + Delta-G solvation = -36.969518 kcal Electronic energy + Delta-G solvation = -20427.754468 eV Core-core repulsion = 17527.215200 eV Total energy + Delta-G solvation = -2900.539268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84560 -38.46662 -37.89782 -35.17092 -34.05285 -32.36943 -31.22977 -29.94294 -29.57411 -25.79194 -24.83702 -24.16071 -23.32957 -20.92600 -20.21234 -18.82999 -18.44423 -18.00481 -17.05810 -16.37897 -16.19586 -15.93817 -15.47822 -14.94840 -14.86596 -14.51591 -14.49043 -14.09856 -14.08433 -13.56965 -13.34440 -13.10649 -13.06370 -12.72926 -12.62014 -12.39445 -12.22645 -11.78496 -11.71535 -11.53465 -11.43072 -11.16125 -10.81645 -10.70672 -10.56280 -9.70440 -8.41987 -8.21646 -6.22796 0.47335 0.60574 1.35417 1.36928 1.47480 2.38287 2.74199 3.00550 3.14934 3.46520 3.68409 3.83728 3.94569 4.04482 4.20614 4.24790 4.31062 4.41440 4.48197 4.50261 4.59664 4.64930 4.79348 4.84633 4.93487 4.95450 4.99548 5.08990 5.14354 5.20024 5.23321 5.43129 5.45093 5.59433 5.68469 5.71456 6.03174 6.27610 6.41841 6.58040 6.86033 6.87480 7.38815 8.95384 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.006492 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.267949 B = 4311.980368 C = 4695.537825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 H 0.075 0.925 4 C -0.008 4.008 5 C -0.498 4.498 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.245 1.245 13 N -0.489 5.489 14 C 0.063 3.937 15 C -0.117 4.117 16 C 0.161 3.839 17 H 0.085 0.915 18 O -0.570 6.570 19 C -0.193 4.193 20 C -0.080 4.080 21 C -0.166 4.166 22 C -0.088 4.088 23 C -0.193 4.193 24 C 0.140 3.860 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.021 0.979 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.391 0.609 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 1.318 -14.377 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 H 0.093 0.907 4 C -0.045 4.045 5 C -0.536 4.536 6 H 0.052 0.948 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.169 1.169 13 N -0.199 5.199 14 C -0.062 4.062 15 C -0.155 4.155 16 C 0.102 3.898 17 H 0.102 0.898 18 O -0.378 6.378 19 C -0.197 4.197 20 C -0.099 4.099 21 C -0.185 4.185 22 C -0.107 4.107 23 C -0.214 4.214 24 C 0.039 3.961 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.241 0.759 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.053 0.880 -13.611 18.879 hybrid contribution -0.230 0.079 0.622 0.668 sum -13.284 0.959 -12.989 18.604 Atomic orbital electron populations 1.22358 0.95546 1.02296 1.02495 1.21709 0.92811 0.97775 0.88385 0.90724 1.19718 0.94914 0.96011 0.93889 1.21235 0.91415 1.37374 1.03623 0.94754 1.25935 0.95499 0.96641 1.01292 1.70081 1.08390 1.48895 1.32300 0.85785 0.79734 0.79373 0.78501 1.19559 1.21361 1.16885 1.57870 1.56878 1.03570 1.01613 1.22043 0.98394 0.86682 0.99128 1.21773 0.99549 1.00951 0.93214 1.20455 0.83532 0.87425 0.98378 0.89778 1.86527 1.23192 1.71947 1.56148 1.20298 1.08244 0.97088 0.94036 1.21218 0.97075 0.94325 0.97259 1.21235 1.04193 0.94623 0.98421 1.21222 0.96677 1.00474 0.92322 1.21310 1.06994 0.92589 1.00476 1.18998 0.93067 0.92960 0.91114 0.92535 0.90719 0.92342 0.95165 0.96130 0.92896 0.91220 0.92889 0.90886 0.88950 0.75936 0.83206 0.83416 0.84284 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 8.46 71.98 0.61 -4.84 16 2 C 0.10 3.95 1.91 44.91 0.09 4.04 16 3 H 0.07 3.12 5.82 -2.39 -0.01 3.10 16 4 C -0.01 -0.37 3.20 29.85 0.10 -0.27 16 5 C -0.50 -28.81 9.35 25.60 0.24 -28.57 16 6 H 0.03 2.25 7.93 -2.91 -0.02 2.22 16 7 C 0.00 0.11 5.47 84.66 0.46 0.58 16 8 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 9 Si 0.94 44.67 27.55 68.60 1.89 46.56 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.25 -10.69 6.43 99.48 0.64 -10.05 16 13 N -0.49 -19.44 4.13 -672.00 -2.78 -22.22 16 14 C 0.06 2.33 4.68 86.52 0.40 2.74 16 15 C -0.12 -3.67 5.86 30.73 0.18 -3.49 16 16 C 0.16 4.13 3.46 29.90 0.10 4.23 16 17 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 18 O -0.57 -13.41 12.95 -148.98 -1.93 -15.34 16 19 C -0.19 -5.46 5.35 -19.71 -0.11 -5.57 16 20 C -0.08 -1.75 9.52 22.32 0.21 -1.54 16 21 C -0.17 -3.53 10.05 22.24 0.22 -3.30 16 22 C -0.09 -2.24 10.04 22.19 0.22 -2.01 16 23 C -0.19 -6.25 8.24 22.50 0.19 -6.07 16 24 C 0.14 4.84 4.82 38.30 0.18 5.03 16 25 H 0.06 1.80 6.76 -2.38 -0.02 1.78 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 1.81 6.62 -2.39 -0.02 1.79 16 28 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 29 H 0.02 0.94 5.90 -2.39 -0.01 0.93 16 30 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 31 H 0.07 2.88 6.28 -2.38 -0.01 2.87 16 32 H 0.05 1.87 6.11 -2.39 -0.01 1.86 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.39 5.70 8.98 -74.06 -0.66 5.03 16 36 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.11 3.90 5.80 -2.91 -0.02 3.89 16 Total: -1.00 -70.50 301.78 0.91 -69.58 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.32 Total: 21.20 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 3.10 Total: -39.05 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.48 Total: -82.95 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.93 Total: -15.34 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.89 Total: 46.56 kcal Total: -70.50 0.91 -69.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695796458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.614 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds