Wall clock time and date at job start Mon Mar 30 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35901 * 116.99751 * 2 1 4 4 C 1.38749 * 120.06298 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94760 * 179.97438 * 4 3 2 6 6 C 1.38224 * 120.10419 * 359.97438 * 5 4 3 7 7 C 1.38491 * 120.05747 * 0.02562 * 6 5 4 8 8 C 1.38102 * 120.01920 * 359.73322 * 7 6 5 9 9 C 1.51185 * 108.25393 * 179.97438 * 7 6 5 10 10 N 1.48046 * 105.67488 * 342.48319 * 9 7 6 11 11 C 1.46899 * 110.99881 * 268.26307 * 10 9 7 12 12 H 1.08998 * 109.47241 * 167.09652 * 11 10 9 13 13 C 1.53000 * 109.47294 * 47.09785 * 11 10 9 14 14 C 1.52998 * 109.47321 * 287.09753 * 11 10 9 15 15 C 1.50699 * 109.47218 * 294.76969 * 14 11 10 16 16 H 1.08004 * 119.99904 * 4.69274 * 15 14 11 17 17 C 1.37879 * 120.00659 * 184.69222 * 15 14 11 18 18 N 1.31519 * 119.99179 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00482 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47227 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46953 * 120.00106 * 19 17 15 22 22 H 1.48501 * 109.47299 * 240.00199 * 19 17 15 23 23 C 1.48046 * 103.89189 * 27.62431 * 10 9 7 24 24 H 1.09003 * 109.46947 * 59.99815 * 1 2 3 25 25 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47325 * 299.99995 * 1 2 3 27 27 H 1.07997 * 120.02254 * 359.95526 * 4 3 2 28 28 H 1.08001 * 119.94705 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.00528 * 180.25291 * 8 7 6 30 30 H 1.08998 * 110.20669 * 223.42987 * 9 7 6 31 31 H 1.09000 * 110.28032 * 101.57141 * 9 7 6 32 32 H 1.08998 * 109.47240 * 59.99745 * 13 11 10 33 33 H 1.08999 * 109.47083 * 180.02562 * 13 11 10 34 34 H 1.08998 * 109.46867 * 300.00095 * 13 11 10 35 35 H 1.08994 * 109.47072 * 54.77040 * 14 11 10 36 36 H 1.08997 * 109.47303 * 174.76976 * 14 11 10 37 37 H 0.97003 * 119.99450 * 179.97438 * 18 17 15 38 38 H 1.09002 * 110.21347 * 213.32214 * 23 10 9 39 39 H 1.09003 * 110.20438 * 91.42341 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3754 -0.0005 5 6 1.9210 3.6048 0.0000 6 6 3.3014 3.6769 0.0016 7 6 4.0566 2.5161 0.0021 8 6 3.4311 1.2848 0.0066 9 6 5.5184 2.9021 0.0033 10 7 5.5583 4.3185 -0.4256 11 6 5.7203 4.4232 -1.8819 12 1 5.5189 5.4469 -2.1973 13 6 4.7396 3.4742 -2.5737 14 6 7.1524 4.0442 -2.2643 15 6 8.1104 5.0547 -1.6880 16 1 7.7436 5.8407 -1.0445 17 6 9.4552 4.9758 -1.9820 18 7 9.9017 4.0189 -2.7659 19 14 10.6425 6.2287 -1.2681 20 1 9.8943 7.1952 -0.4247 21 1 11.6583 5.5316 -0.4389 22 1 11.3189 6.9551 -2.3727 23 6 4.2472 4.8566 0.0023 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2130 2.3204 -0.0017 28 1 1.3338 4.5112 -0.0008 29 1 4.0204 0.3797 0.0112 30 1 6.0726 2.2801 -0.6995 31 1 5.9352 2.8003 1.0053 32 1 3.7194 3.7441 -2.3013 33 1 4.8602 3.5515 -3.6542 34 1 4.9411 2.4504 -2.2583 35 1 7.3849 3.0559 -1.8679 36 1 7.2474 4.0317 -3.3501 37 1 10.8478 3.9635 -2.9731 38 1 3.9036 5.6150 -0.7012 39 1 4.3223 5.2783 1.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:08 Heat of formation + Delta-G solvation = 2.930452 kcal Electronic energy + Delta-G solvation = -19696.725940 eV Core-core repulsion = 16797.916865 eV Total energy + Delta-G solvation = -2898.809076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78616 -39.14639 -36.24163 -33.21841 -31.52935 -31.42697 -28.75351 -28.08337 -27.21855 -26.42798 -23.90446 -22.60397 -21.41897 -20.86665 -18.98904 -17.63544 -16.36703 -16.18129 -15.87884 -15.66551 -15.30297 -14.67807 -14.33585 -13.85513 -13.42889 -13.28717 -12.87952 -12.49686 -12.31129 -12.03489 -11.95341 -11.72512 -11.58949 -11.42439 -11.31156 -11.09094 -10.74044 -10.64122 -10.53956 -10.34153 -9.93150 -9.19565 -8.98581 -8.69782 -8.25211 -7.93051 -7.86878 -5.87324 -3.85403 1.38735 1.48034 3.15202 3.39805 3.47264 3.52912 3.78215 4.53941 4.58421 4.62497 4.81469 4.93461 4.94700 5.06003 5.23040 5.25063 5.41818 5.49649 5.63323 5.68163 5.78344 5.97396 6.05081 6.06454 6.07184 6.19006 6.26578 6.34493 6.36522 6.51039 6.63052 6.75536 6.79278 6.97836 7.37104 7.41192 7.53017 7.80278 7.96921 8.13094 8.59399 9.21321 9.76630 11.24680 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041970 B = 0.004410 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.975809 B = 6347.471246 C = 6562.432732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.067 4.067 6 C -0.152 4.152 7 C -0.069 4.069 8 C -0.136 4.136 9 C 0.076 3.924 10 N -0.471 5.471 11 C 0.073 3.927 12 H 0.073 0.927 13 C -0.182 4.182 14 C 0.031 3.969 15 C -0.492 4.492 16 H 0.062 0.938 17 C 0.050 3.950 18 N -0.904 5.904 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.288 1.288 23 C 0.077 3.923 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.023 0.977 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 -4.697 5.643 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.232 4.232 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.070 4.070 8 C -0.155 4.155 9 C -0.052 4.052 10 N -0.191 5.191 11 C -0.035 4.035 12 H 0.091 0.909 13 C -0.241 4.241 14 C -0.006 4.006 15 C -0.531 4.531 16 H 0.080 0.920 17 C -0.149 4.149 18 N -0.544 5.544 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.052 4.052 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.146 0.854 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.099 -4.616 5.786 19.554 hybrid contribution -0.345 0.228 -0.103 0.426 sum -18.444 -4.388 5.683 19.792 Atomic orbital electron populations 1.23007 0.78722 1.03633 1.01208 1.86052 1.21080 1.27108 1.89044 1.18817 0.92036 0.83954 0.97475 1.21028 0.99509 0.92191 1.10515 1.20207 0.93014 0.96862 0.98433 1.21273 0.93926 0.97271 1.02953 1.21220 0.98150 0.92360 0.95314 1.19652 0.91016 0.97708 1.07124 1.21825 0.89790 0.91071 1.02536 1.65354 1.26385 1.12123 1.15202 1.22211 0.98258 0.98277 0.84724 0.90903 1.22663 0.99295 1.00931 1.01176 1.19171 0.87916 0.96946 0.96535 1.21239 0.91579 1.12254 1.28001 0.91955 1.25022 0.98524 0.95821 0.95571 1.69981 1.14189 1.32822 1.37452 0.86564 0.81155 0.81641 0.78790 1.19736 1.21315 1.21421 1.21798 0.87150 0.94499 1.01735 0.92807 0.88462 0.92826 0.85747 0.86169 0.85400 0.89026 0.88896 0.93672 0.92888 0.92695 0.96673 0.95849 0.93370 0.90764 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.50 -19.43 -0.20 -4.18 16 3 C 0.12 1.66 6.69 -39.22 -0.26 1.40 16 4 C -0.21 -2.61 9.04 -39.44 -0.36 -2.97 16 5 C -0.07 -0.85 10.04 -39.63 -0.40 -1.25 16 6 C -0.15 -2.26 4.42 -104.29 -0.46 -2.72 16 7 C -0.07 -1.08 4.38 -104.34 -0.46 -1.53 16 8 C -0.14 -2.01 9.98 -39.46 -0.39 -2.40 16 9 C 0.08 1.33 5.95 -4.11 -0.02 1.31 16 10 N -0.47 -8.98 5.19 -226.93 -1.18 -10.16 16 11 C 0.07 1.51 2.16 -67.71 -0.15 1.36 16 12 H 0.07 1.52 7.88 -51.93 -0.41 1.11 16 13 C -0.18 -3.29 7.72 37.16 0.29 -3.01 16 14 C 0.03 0.80 4.45 -27.88 -0.12 0.68 16 15 C -0.49 -13.81 8.84 -34.44 -0.30 -14.12 16 16 H 0.06 1.74 7.74 -52.48 -0.41 1.34 16 17 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 18 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 19 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.08 1.20 6.37 -4.10 -0.03 1.17 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.09 1.73 5.44 -51.93 -0.28 1.45 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.04 0.76 6.08 -51.93 -0.32 0.44 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 1.00 5.78 -51.93 -0.30 0.70 16 35 H 0.02 0.41 6.62 -51.93 -0.34 0.06 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 1.10 7.64 -51.93 -0.40 0.71 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -31.18 309.09 -8.46 -39.63 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.68 Total: -0.91 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.77 Total: -19.51 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.44 Total: -36.74 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.20 Total: -4.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.18 -8.46 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.563 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds