Wall clock time and date at job start Mon Mar 30 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35901 * 116.99751 * 2 1 4 4 C 1.38749 * 120.06298 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94760 * 179.97438 * 4 3 2 6 6 C 1.38224 * 120.10419 * 359.97438 * 5 4 3 7 7 C 1.38491 * 120.05747 * 0.02562 * 6 5 4 8 8 C 1.38102 * 120.01920 * 359.73322 * 7 6 5 9 9 C 1.51185 * 108.25393 * 179.97438 * 7 6 5 10 10 N 1.48046 * 105.67488 * 342.48319 * 9 7 6 11 11 C 1.46899 * 110.99881 * 268.26307 * 10 9 7 12 12 H 1.08998 * 109.47241 * 167.09652 * 11 10 9 13 13 C 1.53000 * 109.47294 * 47.09785 * 11 10 9 14 14 C 1.52998 * 109.47321 * 287.09753 * 11 10 9 15 15 C 1.50699 * 109.47218 * 294.76969 * 14 11 10 16 16 H 1.08004 * 119.99904 * 4.69274 * 15 14 11 17 17 C 1.37879 * 120.00659 * 184.69222 * 15 14 11 18 18 N 1.31519 * 119.99179 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00482 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47227 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46953 * 120.00106 * 19 17 15 22 22 H 1.48501 * 109.47299 * 240.00199 * 19 17 15 23 23 C 1.48046 * 103.89189 * 27.62431 * 10 9 7 24 24 H 1.09003 * 109.46947 * 59.99815 * 1 2 3 25 25 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47325 * 299.99995 * 1 2 3 27 27 H 1.07997 * 120.02254 * 359.95526 * 4 3 2 28 28 H 1.08001 * 119.94705 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.00528 * 180.25291 * 8 7 6 30 30 H 1.08998 * 110.20669 * 223.42987 * 9 7 6 31 31 H 1.09000 * 110.28032 * 101.57141 * 9 7 6 32 32 H 1.08998 * 109.47240 * 59.99745 * 13 11 10 33 33 H 1.08999 * 109.47083 * 180.02562 * 13 11 10 34 34 H 1.08998 * 109.46867 * 300.00095 * 13 11 10 35 35 H 1.08994 * 109.47072 * 54.77040 * 14 11 10 36 36 H 1.08997 * 109.47303 * 174.76976 * 14 11 10 37 37 H 0.97003 * 119.99450 * 179.97438 * 18 17 15 38 38 H 1.09002 * 110.21347 * 213.32214 * 23 10 9 39 39 H 1.09003 * 110.20438 * 91.42341 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3754 -0.0005 5 6 1.9210 3.6048 0.0000 6 6 3.3014 3.6769 0.0016 7 6 4.0566 2.5161 0.0021 8 6 3.4311 1.2848 0.0066 9 6 5.5184 2.9021 0.0033 10 7 5.5583 4.3185 -0.4256 11 6 5.7203 4.4232 -1.8819 12 1 5.5189 5.4469 -2.1973 13 6 4.7396 3.4742 -2.5737 14 6 7.1524 4.0442 -2.2643 15 6 8.1104 5.0547 -1.6880 16 1 7.7436 5.8407 -1.0445 17 6 9.4552 4.9758 -1.9820 18 7 9.9017 4.0189 -2.7659 19 14 10.6425 6.2287 -1.2681 20 1 9.8943 7.1952 -0.4247 21 1 11.6583 5.5316 -0.4389 22 1 11.3189 6.9551 -2.3727 23 6 4.2472 4.8566 0.0023 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2130 2.3204 -0.0017 28 1 1.3338 4.5112 -0.0008 29 1 4.0204 0.3797 0.0112 30 1 6.0726 2.2801 -0.6995 31 1 5.9352 2.8003 1.0053 32 1 3.7194 3.7441 -2.3013 33 1 4.8602 3.5515 -3.6542 34 1 4.9411 2.4504 -2.2583 35 1 7.3849 3.0559 -1.8679 36 1 7.2474 4.0317 -3.3501 37 1 10.8478 3.9635 -2.9731 38 1 3.9036 5.6150 -0.7012 39 1 4.3223 5.2783 1.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:07 Heat of formation + Delta-G solvation = -16.864527 kcal Electronic energy + Delta-G solvation = -19697.584315 eV Core-core repulsion = 16797.916865 eV Total energy + Delta-G solvation = -2899.667450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.95885 -40.19852 -37.47483 -35.13266 -33.24445 -32.51647 -29.95763 -29.21219 -29.05188 -27.39091 -25.43935 -24.36380 -22.62132 -21.90652 -20.56020 -18.64386 -18.33643 -17.55768 -16.95298 -16.67930 -16.55325 -16.35649 -15.68438 -15.24487 -14.56465 -14.30224 -14.22207 -13.99294 -13.91566 -13.47398 -13.21751 -13.12928 -12.98800 -12.85015 -12.62748 -12.60511 -12.43683 -12.32873 -11.91783 -11.62139 -11.58713 -11.08939 -11.03153 -10.48353 -9.78543 -9.35691 -8.96102 -8.09176 -6.14597 0.32905 0.42956 1.43316 1.44349 1.57827 2.31574 2.49075 2.72567 3.12928 3.27796 3.56271 3.80638 3.93762 4.11234 4.24770 4.28099 4.31180 4.41515 4.45192 4.53408 4.57037 4.65430 4.72259 4.74698 4.84707 4.92345 4.97151 5.07918 5.13645 5.18661 5.26880 5.36941 5.46799 5.60618 5.70564 5.74781 5.89430 6.09994 6.26382 6.46144 6.46913 6.99985 7.51760 9.03274 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041970 B = 0.004410 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.975809 B = 6347.471246 C = 6562.432732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.119 3.881 4 C -0.205 4.205 5 C -0.061 4.061 6 C -0.162 4.162 7 C -0.081 4.081 8 C -0.154 4.154 9 C 0.079 3.921 10 N -0.495 5.495 11 C 0.086 3.914 12 H 0.071 0.929 13 C -0.167 4.167 14 C 0.038 3.962 15 C -0.502 4.502 16 H 0.062 0.938 17 C -0.007 4.007 18 N -0.941 5.941 19 Si 0.960 3.040 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.080 3.920 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.047 0.953 35 H -0.009 1.009 36 H -0.005 1.005 37 H 0.259 0.741 38 H 0.083 0.917 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.369 -3.765 6.600 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.074 3.926 4 C -0.224 4.224 5 C -0.079 4.079 6 C -0.164 4.164 7 C -0.083 4.083 8 C -0.173 4.173 9 C -0.050 4.050 10 N -0.215 5.215 11 C -0.023 4.023 12 H 0.089 0.911 13 C -0.226 4.226 14 C 0.001 3.999 15 C -0.540 4.540 16 H 0.080 0.920 17 C -0.203 4.203 18 N -0.584 5.584 19 Si 0.785 3.215 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.048 4.048 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.168 0.832 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.009 0.991 36 H 0.013 0.987 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.653 -3.685 6.752 22.039 hybrid contribution 0.341 -0.159 -0.378 0.533 sum -20.313 -3.844 6.374 21.634 Atomic orbital electron populations 1.23357 0.76248 1.05560 1.02390 1.86039 1.23648 1.26690 1.88775 1.18916 0.91703 0.85095 0.96861 1.21392 1.01115 0.91221 1.08639 1.20544 0.92156 0.98367 0.96843 1.21224 0.94826 0.96065 1.04238 1.20941 0.96772 0.93324 0.97227 1.19733 0.92162 0.97311 1.08095 1.21670 0.91427 0.90201 1.01662 1.65237 1.29285 1.13159 1.13824 1.21857 0.95535 0.98466 0.86399 0.91056 1.22492 0.99521 0.99863 1.00695 1.19012 0.91180 0.95350 0.94391 1.21559 0.92323 1.12465 1.27681 0.91991 1.25900 1.00521 0.97836 0.95998 1.70114 1.14643 1.34714 1.38881 0.85472 0.78684 0.79167 0.78136 1.18693 1.20994 1.20798 1.21792 0.85670 0.94941 1.02398 0.91687 0.86430 0.91395 0.82460 0.83167 0.85826 0.91606 0.88944 0.91770 0.92996 0.93445 0.99069 0.98694 0.93268 0.89820 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.70 10.50 -92.43 -0.97 -8.67 16 3 C 0.12 3.02 6.69 22.51 0.15 3.17 16 4 C -0.21 -4.25 9.04 22.36 0.20 -4.05 16 5 C -0.06 -1.34 10.04 22.24 0.22 -1.11 16 6 C -0.16 -4.48 4.42 -19.65 -0.09 -4.57 16 7 C -0.08 -2.51 4.38 -19.68 -0.09 -2.60 16 8 C -0.15 -4.50 9.98 22.35 0.22 -4.28 16 9 C 0.08 2.85 5.95 85.49 0.51 3.36 16 10 N -0.49 -19.02 5.19 -871.88 -4.53 -23.55 16 11 C 0.09 3.59 2.16 44.92 0.10 3.69 16 12 H 0.07 2.97 7.88 -2.39 -0.02 2.96 16 13 C -0.17 -6.07 7.72 71.98 0.56 -5.51 16 14 C 0.04 2.01 4.45 29.85 0.13 2.15 16 15 C -0.50 -28.81 8.84 25.60 0.23 -28.59 16 16 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 17 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 18 N -0.94 -58.48 13.29 21.45 0.28 -58.19 16 19 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 20 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 23 C 0.08 2.38 6.37 85.50 0.54 2.92 16 24 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 25 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 27 H 0.16 2.19 6.30 -2.91 -0.02 2.17 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.07 2.67 5.44 -2.39 -0.01 2.66 16 31 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.06 2.08 6.08 -2.39 -0.01 2.06 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.78 5.78 -2.39 -0.01 1.77 16 35 H -0.01 -0.51 6.62 -2.39 -0.02 -0.53 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.08 2.31 7.64 -2.39 -0.02 2.29 16 39 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -68.23 309.09 2.11 -66.11 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.03 Total: 10.52 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 4.27 Total: -34.01 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -4.24 Total: -81.74 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.97 Total: -8.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -68.23 2.11 -66.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.250 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds