Wall clock time and date at job start Mon Mar 30 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99881 * 2 1 4 4 C 1.38758 * 120.05560 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94013 * 180.02562 * 4 3 2 6 6 C 1.38223 * 120.10478 * 0.02562 * 5 4 3 7 7 C 1.38489 * 120.06023 * 359.97438 * 6 5 4 8 8 C 1.38092 * 120.02112 * 0.02562 * 7 6 5 9 9 C 1.51189 * 108.25247 * 180.02562 * 7 6 5 10 10 N 1.48053 * 105.67605 * 342.49349 * 9 7 6 11 11 C 1.46897 * 111.00402 * 146.98620 * 10 9 7 12 12 H 1.09003 * 109.47088 * 301.93976 * 11 10 9 13 13 C 1.53003 * 109.46874 * 61.93295 * 11 10 9 14 14 C 1.52992 * 109.47217 * 181.93889 * 11 10 9 15 15 C 1.50706 * 109.47227 * 174.54036 * 14 11 10 16 16 H 1.07999 * 119.99813 * 3.70423 * 15 14 11 17 17 C 1.37876 * 120.00347 * 183.71331 * 15 14 11 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46692 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.46854 * 119.99793 * 19 17 15 22 22 H 1.48497 * 109.47025 * 239.99950 * 19 17 15 23 23 C 1.48049 * 103.88957 * 27.62230 * 10 9 7 24 24 H 1.08991 * 109.47251 * 300.00397 * 1 2 3 25 25 H 1.09004 * 109.47100 * 60.00170 * 1 2 3 26 26 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 27 27 H 1.07990 * 120.02969 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.94388 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.00927 * 179.97438 * 8 7 6 30 30 H 1.08996 * 110.21054 * 223.44026 * 9 7 6 31 31 H 1.09003 * 110.27282 * 101.57475 * 9 7 6 32 32 H 1.09006 * 109.46775 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47385 * 300.00162 * 13 11 10 34 34 H 1.09003 * 109.46707 * 60.00448 * 13 11 10 35 35 H 1.09004 * 109.47157 * 294.53246 * 14 11 10 36 36 H 1.08993 * 109.47492 * 54.53479 * 14 11 10 37 37 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.20963 * 91.42388 * 23 10 9 39 39 H 1.09006 * 110.20619 * 213.31912 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3013 3.6769 -0.0016 7 6 4.0566 2.5161 -0.0011 8 6 3.4312 1.2849 -0.0005 9 6 5.5183 2.9023 -0.0012 10 7 5.5579 4.3186 -0.4306 11 6 6.6606 5.0363 0.2226 12 1 6.5448 4.9732 1.3046 13 6 7.9929 4.4041 -0.1853 14 6 6.6396 6.5043 -0.2078 15 6 7.6849 7.2688 0.5630 16 1 8.3425 6.7482 1.2433 17 6 7.8016 8.6329 0.3998 18 7 7.0010 9.2668 -0.4289 19 14 9.0968 9.5806 1.3557 20 1 9.8632 8.6424 2.2144 21 1 10.0210 10.2508 0.4061 22 1 8.4352 10.6019 2.2068 23 6 4.2470 4.8567 -0.0019 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2129 2.3204 -0.0005 28 1 1.3336 4.5112 -0.0019 29 1 4.0204 0.3798 -0.0005 30 1 6.0721 2.2801 -0.7042 31 1 5.9358 2.8009 1.0006 32 1 8.8112 4.9364 0.2998 33 1 8.0079 3.3583 0.1214 34 1 8.1088 4.4673 -1.2673 35 1 6.8522 6.5732 -1.2747 36 1 5.6562 6.9283 -0.0051 37 1 7.0832 10.2264 -0.5441 38 1 4.3227 5.2787 1.0002 39 1 3.9029 5.6150 -0.7054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:10 Heat of formation + Delta-G solvation = -5.585936 kcal Electronic energy + Delta-G solvation = -19135.857446 eV Core-core repulsion = 16236.679072 eV Total energy + Delta-G solvation = -2899.178374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54686 -38.98232 -36.45909 -33.54416 -31.83048 -31.44770 -28.75816 -28.38172 -27.05786 -26.11995 -24.04336 -22.74791 -21.24696 -20.81038 -19.20346 -17.74239 -16.70076 -16.16797 -15.88160 -15.52705 -14.95750 -14.80086 -14.33906 -13.79982 -13.55804 -13.37811 -13.05792 -12.73006 -12.43831 -12.34544 -11.98872 -11.84227 -11.45351 -11.31464 -11.10674 -10.95855 -10.86783 -10.77943 -10.57896 -10.37245 -9.96976 -9.23534 -9.11538 -8.84361 -8.35729 -8.25084 -7.68370 -5.99981 -4.01864 1.33028 1.45189 3.10356 3.30803 3.38568 3.41983 3.74323 4.38595 4.53885 4.62514 4.76807 4.83233 4.93130 4.95861 5.19791 5.23187 5.36126 5.38710 5.57220 5.71717 5.82939 5.91214 5.98063 6.05502 6.11607 6.15480 6.29233 6.32991 6.39929 6.61295 6.70732 6.71334 6.86668 7.07526 7.32240 7.36727 7.47583 7.73103 7.85510 8.06060 8.42405 9.04539 9.61584 11.11446 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.045737 B = 0.003780 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.051850 B = 7406.423467 C = 7818.885048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.208 4.208 5 C -0.064 4.064 6 C -0.128 4.128 7 C -0.061 4.061 8 C -0.134 4.134 9 C 0.075 3.925 10 N -0.498 5.498 11 C 0.074 3.926 12 H 0.033 0.967 13 C -0.130 4.130 14 C 0.033 3.967 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.083 3.917 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.020 0.980 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 -15.864 1.294 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.227 4.227 5 C -0.083 4.083 6 C -0.129 4.129 7 C -0.061 4.061 8 C -0.154 4.154 9 C -0.053 4.053 10 N -0.222 5.222 11 C -0.033 4.033 12 H 0.051 0.949 13 C -0.188 4.188 14 C -0.005 4.005 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.044 4.044 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.347 -15.807 0.650 19.469 hybrid contribution 0.222 0.721 1.368 1.562 sum -11.126 -15.086 2.017 18.853 Atomic orbital electron populations 1.23017 0.78602 1.03666 1.01343 1.86038 1.21179 1.27028 1.89096 1.18768 0.91966 0.84018 0.97728 1.21066 0.99677 0.92050 1.09909 1.20268 0.92971 0.97159 0.97860 1.20760 0.93692 0.96265 1.02136 1.20491 0.96544 0.92437 0.96669 1.19572 0.91096 0.97411 1.07273 1.21668 0.91141 0.92531 0.99953 1.65417 1.02330 1.00333 1.54166 1.22165 0.89008 0.97316 0.94834 0.94872 1.21736 0.97292 0.97844 1.01933 1.19131 0.97382 0.86682 0.97269 1.21230 1.17290 0.92392 1.24689 0.92551 1.24991 0.96080 0.97838 0.95435 1.69978 1.38052 1.08852 1.36338 0.86565 0.81718 0.80009 0.79886 1.19772 1.21017 1.21097 1.21549 0.87863 0.94483 1.00548 0.92751 0.92696 0.88440 0.85480 0.85679 0.85403 0.89433 0.92212 0.91356 0.94921 0.92507 0.95865 0.96134 0.93071 0.91985 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.75 10.50 -19.44 -0.20 -3.95 16 3 C 0.12 1.57 6.69 -39.21 -0.26 1.31 16 4 C -0.21 -2.53 9.04 -39.43 -0.36 -2.89 16 5 C -0.06 -0.86 10.04 -39.63 -0.40 -1.26 16 6 C -0.13 -2.01 6.26 -104.29 -0.65 -2.66 16 7 C -0.06 -0.93 6.26 -104.34 -0.65 -1.58 16 8 C -0.13 -1.86 9.98 -39.46 -0.39 -2.26 16 9 C 0.07 1.18 5.34 -4.10 -0.02 1.16 16 10 N -0.50 -9.37 5.30 -226.92 -1.20 -10.57 16 11 C 0.07 1.54 1.67 -67.72 -0.11 1.43 16 12 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 13 C -0.13 -2.47 8.94 37.16 0.33 -2.14 16 14 C 0.03 0.84 4.49 -27.88 -0.13 0.71 16 15 C -0.52 -14.28 8.48 -34.44 -0.29 -14.57 16 16 H 0.06 1.51 6.96 -52.49 -0.37 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.08 1.48 5.32 -4.10 -0.02 1.46 16 24 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 32 H 0.07 1.35 6.91 -51.93 -0.36 0.99 16 33 H 0.03 0.52 7.21 -51.93 -0.37 0.15 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.55 7.06 -51.93 -0.37 0.19 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.06 1.14 7.72 -51.93 -0.40 0.74 16 39 H 0.09 1.68 8.07 -51.93 -0.42 1.26 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -30.68 315.83 -8.89 -39.57 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.89 Total: -1.85 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.06 Total: -18.54 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.47 Total: -36.42 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.20 Total: -3.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.68 -8.89 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.982 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds