Wall clock time and date at job start Mon Mar 30 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99881 * 2 1 4 4 C 1.38758 * 120.05560 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94013 * 180.02562 * 4 3 2 6 6 C 1.38223 * 120.10478 * 0.02562 * 5 4 3 7 7 C 1.38489 * 120.06023 * 359.97438 * 6 5 4 8 8 C 1.38092 * 120.02112 * 0.02562 * 7 6 5 9 9 C 1.51189 * 108.25247 * 180.02562 * 7 6 5 10 10 N 1.48053 * 105.67605 * 342.49349 * 9 7 6 11 11 C 1.46897 * 111.00402 * 146.98620 * 10 9 7 12 12 H 1.09003 * 109.47088 * 301.93976 * 11 10 9 13 13 C 1.53003 * 109.46874 * 61.93295 * 11 10 9 14 14 C 1.52992 * 109.47217 * 181.93889 * 11 10 9 15 15 C 1.50706 * 109.47227 * 174.54036 * 14 11 10 16 16 H 1.07999 * 119.99813 * 3.70423 * 15 14 11 17 17 C 1.37876 * 120.00347 * 183.71331 * 15 14 11 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46692 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.46854 * 119.99793 * 19 17 15 22 22 H 1.48497 * 109.47025 * 239.99950 * 19 17 15 23 23 C 1.48049 * 103.88957 * 27.62230 * 10 9 7 24 24 H 1.08991 * 109.47251 * 300.00397 * 1 2 3 25 25 H 1.09004 * 109.47100 * 60.00170 * 1 2 3 26 26 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 27 27 H 1.07990 * 120.02969 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.94388 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.00927 * 179.97438 * 8 7 6 30 30 H 1.08996 * 110.21054 * 223.44026 * 9 7 6 31 31 H 1.09003 * 110.27282 * 101.57475 * 9 7 6 32 32 H 1.09006 * 109.46775 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47385 * 300.00162 * 13 11 10 34 34 H 1.09003 * 109.46707 * 60.00448 * 13 11 10 35 35 H 1.09004 * 109.47157 * 294.53246 * 14 11 10 36 36 H 1.08993 * 109.47492 * 54.53479 * 14 11 10 37 37 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.20963 * 91.42388 * 23 10 9 39 39 H 1.09006 * 110.20619 * 213.31912 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3013 3.6769 -0.0016 7 6 4.0566 2.5161 -0.0011 8 6 3.4312 1.2849 -0.0005 9 6 5.5183 2.9023 -0.0012 10 7 5.5579 4.3186 -0.4306 11 6 6.6606 5.0363 0.2226 12 1 6.5448 4.9732 1.3046 13 6 7.9929 4.4041 -0.1853 14 6 6.6396 6.5043 -0.2078 15 6 7.6849 7.2688 0.5630 16 1 8.3425 6.7482 1.2433 17 6 7.8016 8.6329 0.3998 18 7 7.0010 9.2668 -0.4289 19 14 9.0968 9.5806 1.3557 20 1 9.8632 8.6424 2.2144 21 1 10.0210 10.2508 0.4061 22 1 8.4352 10.6019 2.2068 23 6 4.2470 4.8567 -0.0019 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2129 2.3204 -0.0005 28 1 1.3336 4.5112 -0.0019 29 1 4.0204 0.3798 -0.0005 30 1 6.0721 2.2801 -0.7042 31 1 5.9358 2.8009 1.0006 32 1 8.8112 4.9364 0.2998 33 1 8.0079 3.3583 0.1214 34 1 8.1088 4.4673 -1.2673 35 1 6.8522 6.5732 -1.2747 36 1 5.6562 6.9283 -0.0051 37 1 7.0832 10.2264 -0.5441 38 1 4.3227 5.2787 1.0002 39 1 3.9029 5.6150 -0.7054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:09 Heat of formation + Delta-G solvation = -24.816459 kcal Electronic energy + Delta-G solvation = -19136.691344 eV Core-core repulsion = 16236.679072 eV Total energy + Delta-G solvation = -2900.012272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65516 -40.07458 -37.75195 -35.35132 -33.57969 -32.53596 -30.19629 -29.54625 -28.40965 -27.37412 -25.58814 -24.38885 -22.47540 -21.85739 -20.89436 -18.67901 -18.63601 -17.38369 -16.76163 -16.71779 -16.58013 -16.07602 -15.98722 -15.18079 -14.84534 -14.43736 -14.29815 -14.12589 -13.96283 -13.74553 -13.34501 -13.11655 -12.84605 -12.80599 -12.70704 -12.53386 -12.40131 -12.19985 -12.03595 -11.67465 -11.60018 -11.20552 -11.09828 -10.54318 -9.96165 -9.51583 -8.92457 -8.17789 -6.27644 0.28131 0.37860 1.40889 1.41333 1.54192 2.28400 2.41523 2.67778 3.05604 3.16257 3.52407 3.58777 3.89986 4.15634 4.23311 4.25576 4.36513 4.43051 4.44153 4.46105 4.53024 4.60560 4.66683 4.75047 4.80315 4.80731 5.01258 5.06048 5.19221 5.22170 5.33477 5.39998 5.48752 5.54749 5.65177 5.69031 5.78876 5.95727 6.11591 6.33111 6.43314 6.88302 7.40743 8.94742 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.045737 B = 0.003780 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.051850 B = 7406.423467 C = 7818.885048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.122 3.878 4 C -0.202 4.202 5 C -0.066 4.066 6 C -0.153 4.153 7 C -0.070 4.070 8 C -0.142 4.142 9 C 0.077 3.923 10 N -0.512 5.512 11 C 0.085 3.915 12 H 0.029 0.971 13 C -0.123 4.123 14 C 0.042 3.958 15 C -0.531 4.531 16 H 0.064 0.936 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.260 1.260 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.086 3.914 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.159 0.841 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.049 0.951 35 H -0.010 1.010 36 H -0.007 1.007 37 H 0.262 0.738 38 H 0.046 0.954 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 -17.732 2.155 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.077 3.923 4 C -0.220 4.220 5 C -0.084 4.084 6 C -0.153 4.153 7 C -0.071 4.071 8 C -0.161 4.161 9 C -0.050 4.050 10 N -0.236 5.236 11 C -0.023 4.023 12 H 0.047 0.953 13 C -0.181 4.181 14 C 0.005 3.995 15 C -0.570 4.570 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.206 1.206 23 C -0.041 4.041 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.139 0.861 27 H 0.177 0.823 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.012 0.988 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.934 -17.703 1.514 21.403 hybrid contribution 0.246 1.210 1.064 1.630 sum -11.688 -16.493 2.578 20.378 Atomic orbital electron populations 1.23373 0.76257 1.05697 1.02367 1.86037 1.23587 1.26222 1.88667 1.18907 0.91949 0.84924 0.96553 1.21377 1.01268 0.91009 1.08357 1.20522 0.92169 0.98633 0.97096 1.20650 0.94627 0.95196 1.04876 1.20437 0.95953 0.92942 0.97727 1.19735 0.91946 0.97233 1.07174 1.21675 0.92276 0.90448 1.00593 1.65305 1.01985 1.02079 1.54258 1.21870 0.91096 0.94829 0.94481 0.95335 1.21650 0.95473 0.99590 1.01338 1.18938 0.95481 0.90057 0.95037 1.21615 1.17630 0.93003 1.24733 0.91817 1.25936 0.98342 0.99048 0.96424 1.70119 1.39947 1.09266 1.37994 0.85426 0.78824 0.78497 0.78477 1.18418 1.20536 1.20613 1.21383 0.88444 0.95283 0.99023 0.91617 0.91669 0.86123 0.82318 0.84123 0.83970 0.88024 0.91559 0.92341 0.91484 0.93207 0.99154 0.98838 0.92899 0.93557 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.79 10.50 -92.47 -0.97 -7.76 16 3 C 0.12 2.89 6.69 22.51 0.15 3.05 16 4 C -0.20 -4.38 9.04 22.37 0.20 -4.17 16 5 C -0.07 -1.69 10.04 22.24 0.22 -1.47 16 6 C -0.15 -4.81 6.26 -19.65 -0.12 -4.93 16 7 C -0.07 -2.08 6.26 -19.68 -0.12 -2.21 16 8 C -0.14 -3.68 9.98 22.35 0.22 -3.46 16 9 C 0.08 2.39 5.34 85.49 0.46 2.84 16 10 N -0.51 -19.73 5.30 -871.84 -4.62 -24.35 16 11 C 0.09 3.63 1.67 44.91 0.08 3.71 16 12 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 13 C -0.12 -4.61 8.94 71.98 0.64 -3.97 16 14 C 0.04 2.27 4.49 29.85 0.13 2.40 16 15 C -0.53 -30.01 8.48 25.60 0.22 -29.80 16 16 H 0.06 3.43 6.96 -2.91 -0.02 3.41 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 19 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C 0.09 3.24 5.32 85.50 0.45 3.69 16 24 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 25 H 0.06 0.62 7.66 -2.38 -0.02 0.60 16 26 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.16 2.36 6.30 -2.92 -0.02 2.34 16 28 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 29 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.07 1.96 7.68 -2.39 -0.02 1.94 16 32 H 0.06 2.28 6.91 -2.38 -0.02 2.27 16 33 H 0.07 2.03 7.21 -2.39 -0.02 2.02 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H -0.01 -0.39 7.06 -2.39 -0.02 -0.41 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.05 1.83 7.72 -2.39 -0.02 1.81 16 39 H 0.07 2.85 8.07 -2.38 -0.02 2.83 16 Total: -1.00 -67.51 315.83 1.85 -65.66 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.02 Total: 9.52 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 4.11 Total: -32.53 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -4.33 Total: -81.27 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.97 Total: -7.76 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.51 1.85 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.843 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds