Wall clock time and date at job start Mon Mar 30 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46828 * 2 1 4 4 C 1.53004 * 109.46997 * 240.00128 * 2 1 3 5 5 C 1.50694 * 109.46788 * 174.07274 * 4 2 1 6 6 H 1.07995 * 120.00384 * 355.13172 * 5 4 2 7 7 C 1.37880 * 119.99675 * 175.13113 * 5 4 2 8 8 N 1.31516 * 119.99627 * 185.10777 * 7 5 4 9 9 Si 1.86799 * 119.99976 * 5.10268 * 7 5 4 10 10 H 1.48505 * 109.46890 * 90.00525 * 9 7 5 11 11 H 1.48503 * 109.46886 * 210.00232 * 9 7 5 12 12 H 1.48500 * 109.47463 * 330.00259 * 9 7 5 13 13 N 1.46898 * 109.47025 * 120.00465 * 2 1 3 14 14 C 1.46589 * 110.99799 * 302.53358 * 13 2 1 15 15 C 1.52193 * 110.97112 * 209.17896 * 14 13 2 16 16 C 1.51619 * 112.90458 * 293.02132 * 15 14 13 17 17 O 1.43205 * 110.54774 * 64.26413 * 16 15 14 18 18 C 1.36254 * 115.44608 * 275.70003 * 17 16 15 19 19 C 1.38574 * 120.00611 * 249.10973 * 18 17 16 20 20 C 1.38352 * 119.74070 * 179.12423 * 19 18 17 21 21 C 1.38257 * 120.27995 * 359.94084 * 20 19 18 22 22 C 1.38336 * 120.17925 * 0.38064 * 21 20 19 23 23 C 1.38623 * 120.03915 * 68.95108 * 18 17 16 24 24 H 1.09006 * 109.47178 * 208.79286 * 1 2 3 25 25 H 1.08998 * 109.47025 * 328.79309 * 1 2 3 26 26 H 1.08999 * 109.46972 * 88.79131 * 1 2 3 27 27 H 1.09001 * 109.46935 * 294.07803 * 4 2 1 28 28 H 1.09000 * 109.46607 * 54.07340 * 4 2 1 29 29 H 0.97002 * 119.99658 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.17491 * 329.56976 * 14 13 2 31 31 H 1.09001 * 109.17322 * 88.84370 * 14 13 2 32 32 H 1.09004 * 108.75172 * 172.15740 * 15 14 13 33 33 H 1.08998 * 108.82076 * 53.93171 * 15 14 13 34 34 H 1.09000 * 109.25533 * 303.99479 * 16 15 14 35 35 H 1.09005 * 109.25562 * 184.52613 * 16 15 14 36 36 H 1.07999 * 120.12903 * 359.09513 * 19 18 17 37 37 H 1.07994 * 119.86115 * 179.91417 * 20 19 18 38 38 H 1.07996 * 119.91136 * 180.41559 * 21 20 19 39 39 H 1.07993 * 120.17314 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5398 -0.5954 -1.3248 6 1 4.0680 0.0101 -0.6032 7 6 4.2378 -1.2534 -2.3152 8 7 5.5526 -1.2260 -2.3222 9 14 3.3158 -2.1838 -3.6471 10 1 3.0433 -1.2737 -4.7884 11 1 4.1400 -3.3282 -4.1123 12 1 2.0314 -2.6892 -3.0992 13 7 2.0197 -0.6926 1.1994 14 6 1.5009 -0.0638 2.4177 15 6 2.4703 -0.2410 3.5774 16 6 2.6034 -1.6850 4.0199 17 8 3.1736 -2.4805 2.9745 18 6 2.2925 -2.9426 2.0435 19 6 2.0009 -4.2957 1.9769 20 6 1.0917 -4.7565 1.0414 21 6 0.4738 -3.8731 0.1758 22 6 0.7668 -2.5224 0.2343 23 6 1.6848 -2.0594 1.1647 24 1 -0.3634 -0.9007 0.4950 25 1 -0.3633 0.8789 0.5325 26 1 -0.3633 0.0217 -1.0274 27 1 1.7658 -1.7750 -1.1979 28 1 1.5926 -0.2723 -2.1360 29 1 6.0437 -1.6892 -3.0188 30 1 1.3511 1.0004 2.2354 31 1 0.5457 -0.5203 2.6773 32 1 2.1202 0.3542 4.4208 33 1 3.4512 0.1256 3.2749 34 1 1.6177 -2.0760 4.2722 35 1 3.2454 -1.7338 4.8995 36 1 2.4818 -4.9878 2.6522 37 1 0.8639 -5.8108 0.9869 38 1 -0.2400 -4.2385 -0.5476 39 1 0.2838 -1.8325 -0.4417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:19 Heat of formation + Delta-G solvation = 31.526566 kcal Electronic energy + Delta-G solvation = -20959.939946 eV Core-core repulsion = 18062.370891 eV Total energy + Delta-G solvation = -2897.569055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77508 -37.77271 -36.74835 -33.41563 -32.19934 -31.03729 -29.90582 -28.25098 -27.59299 -25.60094 -22.96890 -22.16311 -21.47154 -20.66586 -19.63071 -17.55158 -16.55611 -16.09374 -15.75841 -15.02921 -14.72587 -14.41091 -14.33108 -14.10713 -13.49559 -13.32584 -12.69550 -12.60042 -12.29342 -12.18773 -12.01154 -11.78815 -11.48910 -11.35738 -11.18043 -10.89565 -10.63907 -10.49295 -10.09019 -9.77734 -9.56841 -9.45721 -9.09910 -8.71627 -8.40941 -8.08937 -7.22660 -5.89127 -3.82254 1.71455 1.80926 3.36297 3.44548 3.45909 3.88917 4.14696 4.34384 4.55985 4.97630 5.06249 5.28191 5.36821 5.40091 5.44709 5.47376 5.49489 5.59120 5.67939 5.72258 5.77914 5.86469 5.94238 5.96305 6.12325 6.21241 6.27470 6.35822 6.42770 6.58645 6.72939 6.77249 6.92056 7.08893 7.12597 7.29814 7.64600 7.70270 7.93690 8.08798 8.70434 9.21536 9.73343 11.24924 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.008972 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.929392 B = 3120.051365 C = 3394.370583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.091 3.909 3 H 0.085 0.915 4 C -0.030 4.030 5 C -0.493 4.493 6 H 0.076 0.924 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.869 3.131 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.458 5.458 14 C 0.058 3.942 15 C -0.152 4.152 16 C 0.067 3.933 17 O -0.313 6.313 18 C 0.088 3.912 19 C -0.126 4.126 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.155 4.155 23 C 0.102 3.898 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 -1.884 10.850 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.016 4.016 3 H 0.104 0.896 4 C -0.067 4.067 5 C -0.531 4.531 6 H 0.094 0.906 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.697 3.303 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.174 5.174 14 C -0.068 4.068 15 C -0.190 4.190 16 C -0.009 4.009 17 O -0.229 6.229 18 C 0.043 3.957 19 C -0.146 4.146 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.175 4.175 23 C 0.004 3.996 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.519 -1.832 10.792 15.891 hybrid contribution -1.112 -0.458 -0.988 1.556 sum -12.632 -2.289 9.804 16.153 Atomic orbital electron populations 1.23141 0.99102 1.01794 1.02605 1.21899 0.90314 0.98895 0.90478 0.89640 1.20320 0.98563 0.96803 0.91013 1.20960 0.89291 1.29575 1.13233 0.90605 1.24970 0.94617 0.96067 0.97797 1.69923 1.05919 1.44310 1.34121 0.86957 0.80543 0.79998 0.82814 1.20603 1.21515 1.19012 1.59587 1.56234 0.99205 1.02333 1.21848 0.95436 0.99453 0.90108 1.21804 1.02196 0.97338 0.97640 1.22464 0.98352 0.90662 0.89382 1.86423 1.31984 1.68382 1.36121 1.18276 0.93389 0.91243 0.92824 1.20980 0.98653 0.94179 1.00738 1.20826 0.98338 0.99201 0.96831 1.21008 1.00771 0.93268 0.99189 1.22199 0.97952 0.96950 1.00361 1.19193 0.93696 0.90683 0.95999 0.90929 0.93359 0.91609 0.93882 0.96660 0.93057 0.90397 0.94611 0.90865 0.89786 0.93464 0.88894 0.85799 0.86365 0.86512 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.19 7.17 37.16 0.27 -2.92 16 2 C 0.09 1.79 2.19 -67.71 -0.15 1.64 16 3 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 4 C -0.03 -0.72 2.77 -27.88 -0.08 -0.79 16 5 C -0.49 -14.33 9.40 -34.44 -0.32 -14.65 16 6 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -28.97 13.96 55.43 0.77 -28.19 16 9 Si 0.87 22.37 27.53 -169.99 -4.68 17.69 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.50 6.48 56.52 0.37 -6.14 16 13 N -0.46 -9.02 4.21 -164.11 -0.69 -9.71 16 14 C 0.06 0.88 4.44 -4.41 -0.02 0.86 16 15 C -0.15 -2.09 5.84 -27.84 -0.16 -2.25 16 16 C 0.07 0.94 6.53 36.46 0.24 1.17 16 17 O -0.31 -5.97 10.16 -20.55 -0.21 -6.18 16 18 C 0.09 1.71 5.68 -39.32 -0.22 1.49 16 19 C -0.13 -2.15 10.00 -39.42 -0.39 -2.54 16 20 C -0.13 -2.09 10.04 -39.53 -0.40 -2.48 16 21 C -0.12 -2.04 10.04 -39.54 -0.40 -2.44 16 22 C -0.15 -2.86 5.27 -39.39 -0.21 -3.07 16 23 C 0.10 2.02 4.39 -83.45 -0.37 1.65 16 24 H 0.07 1.09 4.88 -51.93 -0.25 0.83 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 27 H 0.04 1.05 3.34 -51.93 -0.17 0.88 16 28 H 0.02 0.36 7.51 -51.93 -0.39 -0.03 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.08 1.08 7.73 -51.93 -0.40 0.68 16 31 H 0.04 0.51 7.73 -51.93 -0.40 0.11 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.05 0.60 7.93 -51.93 -0.41 0.19 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.16 2.77 3.34 -52.49 -0.18 2.59 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -33.64 297.10 -8.22 -41.86 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.58 Total: 2.53 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.31 Total: -22.46 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.08 Total: -37.90 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.21 Total: -6.18 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.68 Total: 17.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.64 -8.22 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.382 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds