Wall clock time and date at job start Mon Mar 30 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46828 * 2 1 4 4 C 1.53004 * 109.46997 * 240.00128 * 2 1 3 5 5 C 1.50694 * 109.46788 * 174.07274 * 4 2 1 6 6 H 1.07995 * 120.00384 * 355.13172 * 5 4 2 7 7 C 1.37880 * 119.99675 * 175.13113 * 5 4 2 8 8 N 1.31516 * 119.99627 * 185.10777 * 7 5 4 9 9 Si 1.86799 * 119.99976 * 5.10268 * 7 5 4 10 10 H 1.48505 * 109.46890 * 90.00525 * 9 7 5 11 11 H 1.48503 * 109.46886 * 210.00232 * 9 7 5 12 12 H 1.48500 * 109.47463 * 330.00259 * 9 7 5 13 13 N 1.46898 * 109.47025 * 120.00465 * 2 1 3 14 14 C 1.46589 * 110.99799 * 302.53358 * 13 2 1 15 15 C 1.52193 * 110.97112 * 209.17896 * 14 13 2 16 16 C 1.51619 * 112.90458 * 293.02132 * 15 14 13 17 17 O 1.43205 * 110.54774 * 64.26413 * 16 15 14 18 18 C 1.36254 * 115.44608 * 275.70003 * 17 16 15 19 19 C 1.38574 * 120.00611 * 249.10973 * 18 17 16 20 20 C 1.38352 * 119.74070 * 179.12423 * 19 18 17 21 21 C 1.38257 * 120.27995 * 359.94084 * 20 19 18 22 22 C 1.38336 * 120.17925 * 0.38064 * 21 20 19 23 23 C 1.38623 * 120.03915 * 68.95108 * 18 17 16 24 24 H 1.09006 * 109.47178 * 208.79286 * 1 2 3 25 25 H 1.08998 * 109.47025 * 328.79309 * 1 2 3 26 26 H 1.08999 * 109.46972 * 88.79131 * 1 2 3 27 27 H 1.09001 * 109.46935 * 294.07803 * 4 2 1 28 28 H 1.09000 * 109.46607 * 54.07340 * 4 2 1 29 29 H 0.97002 * 119.99658 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.17491 * 329.56976 * 14 13 2 31 31 H 1.09001 * 109.17322 * 88.84370 * 14 13 2 32 32 H 1.09004 * 108.75172 * 172.15740 * 15 14 13 33 33 H 1.08998 * 108.82076 * 53.93171 * 15 14 13 34 34 H 1.09000 * 109.25533 * 303.99479 * 16 15 14 35 35 H 1.09005 * 109.25562 * 184.52613 * 16 15 14 36 36 H 1.07999 * 120.12903 * 359.09513 * 19 18 17 37 37 H 1.07994 * 119.86115 * 179.91417 * 20 19 18 38 38 H 1.07996 * 119.91136 * 180.41559 * 21 20 19 39 39 H 1.07993 * 120.17314 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5398 -0.5954 -1.3248 6 1 4.0680 0.0101 -0.6032 7 6 4.2378 -1.2534 -2.3152 8 7 5.5526 -1.2260 -2.3222 9 14 3.3158 -2.1838 -3.6471 10 1 3.0433 -1.2737 -4.7884 11 1 4.1400 -3.3282 -4.1123 12 1 2.0314 -2.6892 -3.0992 13 7 2.0197 -0.6926 1.1994 14 6 1.5009 -0.0638 2.4177 15 6 2.4703 -0.2410 3.5774 16 6 2.6034 -1.6850 4.0199 17 8 3.1736 -2.4805 2.9745 18 6 2.2925 -2.9426 2.0435 19 6 2.0009 -4.2957 1.9769 20 6 1.0917 -4.7565 1.0414 21 6 0.4738 -3.8731 0.1758 22 6 0.7668 -2.5224 0.2343 23 6 1.6848 -2.0594 1.1647 24 1 -0.3634 -0.9007 0.4950 25 1 -0.3633 0.8789 0.5325 26 1 -0.3633 0.0217 -1.0274 27 1 1.7658 -1.7750 -1.1979 28 1 1.5926 -0.2723 -2.1360 29 1 6.0437 -1.6892 -3.0188 30 1 1.3511 1.0004 2.2354 31 1 0.5457 -0.5203 2.6773 32 1 2.1202 0.3542 4.4208 33 1 3.4512 0.1256 3.2749 34 1 1.6177 -2.0760 4.2722 35 1 3.2454 -1.7338 4.8995 36 1 2.4818 -4.9878 2.6522 37 1 0.8639 -5.8108 0.9869 38 1 -0.2400 -4.2385 -0.5476 39 1 0.2838 -1.8325 -0.4417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:18 Heat of formation + Delta-G solvation = 9.130761 kcal Electronic energy + Delta-G solvation = -20960.911101 eV Core-core repulsion = 18062.370891 eV Total energy + Delta-G solvation = -2898.540210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10302 -39.13553 -38.00381 -35.17035 -33.94918 -32.45092 -31.22464 -29.99342 -28.93223 -26.85626 -24.78336 -23.45893 -22.87043 -21.99396 -21.06708 -18.95894 -18.66471 -17.41813 -17.09900 -16.39523 -16.22623 -15.91522 -15.68252 -15.40663 -15.10843 -14.62370 -14.39342 -14.12555 -13.86021 -13.55062 -13.33939 -13.20421 -12.94401 -12.72798 -12.56240 -12.40633 -12.28892 -11.79159 -11.67074 -11.47970 -11.36792 -11.11380 -10.73200 -10.60201 -10.14473 -9.43879 -8.56062 -8.20108 -6.17868 0.41999 0.51759 1.32755 1.36194 1.46312 2.39758 2.66182 2.84030 3.05111 3.18074 3.83762 3.91623 4.02444 4.12026 4.21698 4.24534 4.36019 4.38554 4.50963 4.53100 4.58859 4.63951 4.72852 4.81746 4.87916 4.92086 5.03522 5.04370 5.10311 5.19307 5.28150 5.43819 5.48902 5.57041 5.64779 5.73663 5.90152 6.28278 6.35542 6.44891 6.77640 6.87560 7.41092 8.97979 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.008972 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.929392 B = 3120.051365 C = 3394.370583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.093 3.907 3 H 0.070 0.930 4 C -0.028 4.028 5 C -0.491 4.491 6 H 0.024 0.976 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.941 3.059 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.240 1.240 13 N -0.490 5.490 14 C 0.055 3.945 15 C -0.149 4.149 16 C 0.060 3.940 17 O -0.346 6.346 18 C 0.060 3.940 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.174 4.174 23 C 0.079 3.921 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.260 0.740 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.535 -3.103 10.973 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.015 4.015 3 H 0.088 0.912 4 C -0.065 4.065 5 C -0.529 4.529 6 H 0.042 0.958 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.765 3.235 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.163 1.163 13 N -0.206 5.206 14 C -0.070 4.070 15 C -0.187 4.187 16 C -0.014 4.014 17 O -0.263 6.263 18 C 0.015 3.985 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.194 4.194 23 C -0.019 4.019 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.668 -3.032 10.936 18.546 hybrid contribution -0.068 -0.035 -0.887 0.891 sum -14.736 -3.067 10.049 18.098 Atomic orbital electron populations 1.22957 0.95267 1.03305 1.03702 1.21715 0.93299 0.97311 0.89138 0.91183 1.20286 0.94666 0.97845 0.93684 1.21233 0.92303 1.27952 1.11453 0.95799 1.25975 0.95453 0.97628 1.00791 1.70114 1.08122 1.46327 1.35539 0.85801 0.79832 0.78417 0.79466 1.19112 1.21831 1.16320 1.59534 1.57685 0.99862 1.03556 1.21975 0.96246 0.99791 0.88966 1.21828 1.00392 0.97876 0.98580 1.22756 0.99674 0.90139 0.88843 1.86355 1.33511 1.69307 1.37148 1.18674 0.93964 0.92349 0.93537 1.21312 0.98984 0.93595 1.01460 1.21251 0.97069 1.00926 0.95551 1.21421 1.00912 0.92593 0.99578 1.22373 0.98303 0.98171 1.00591 1.19428 0.94726 0.90724 0.96986 0.90246 0.90962 0.90698 0.93436 0.95636 0.93146 0.89424 0.93089 0.86818 0.92911 0.91821 0.86598 0.84126 0.82853 0.83587 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.46 7.17 71.98 0.52 -4.95 16 2 C 0.09 3.61 2.19 44.92 0.10 3.70 16 3 H 0.07 2.85 8.10 -2.39 -0.02 2.83 16 4 C -0.03 -1.32 2.77 29.85 0.08 -1.23 16 5 C -0.49 -29.57 9.40 25.60 0.24 -29.32 16 6 H 0.02 1.63 7.99 -2.91 -0.02 1.61 16 7 C 0.00 -0.23 5.47 84.66 0.46 0.24 16 8 N -0.96 -63.99 13.96 21.45 0.30 -63.69 16 9 Si 0.94 46.16 27.53 68.60 1.89 48.05 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.24 -10.68 6.48 99.48 0.64 -10.04 16 13 N -0.49 -19.39 4.21 -673.13 -2.84 -22.23 16 14 C 0.06 1.64 4.44 86.10 0.38 2.02 16 15 C -0.15 -4.00 5.84 29.87 0.17 -3.82 16 16 C 0.06 1.64 6.53 71.53 0.47 2.10 16 17 O -0.35 -13.37 10.16 -96.46 -0.98 -14.35 16 18 C 0.06 2.31 5.68 22.44 0.13 2.44 16 19 C -0.13 -4.36 10.00 22.38 0.22 -4.14 16 20 C -0.13 -3.66 10.04 22.30 0.22 -3.44 16 21 C -0.13 -3.78 10.04 22.30 0.22 -3.56 16 22 C -0.17 -6.10 5.27 22.40 0.12 -5.98 16 23 C 0.08 3.07 4.39 37.90 0.17 3.24 16 24 H 0.08 2.16 4.88 -2.38 -0.01 2.15 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.97 7.72 -2.39 -0.02 1.95 16 27 H 0.05 2.24 3.34 -2.39 -0.01 2.24 16 28 H 0.03 1.14 7.51 -2.39 -0.02 1.13 16 29 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 30 H 0.09 2.33 7.73 -2.39 -0.02 2.31 16 31 H 0.05 1.34 7.73 -2.39 -0.02 1.33 16 32 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.51 7.93 -2.39 -0.02 1.49 16 35 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.16 5.27 3.34 -2.91 -0.01 5.26 16 Total: -1.00 -76.98 297.10 2.85 -74.12 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.98 Total: 20.78 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 3.51 Total: -42.70 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.54 Total: -85.91 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.98 Total: -14.35 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.89 Total: 48.05 kcal Total: -76.98 2.85 -74.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.254 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds