Wall clock time and date at job start Mon Mar 30 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46677 * 2 1 4 4 C 1.52998 * 109.47163 * 120.00584 * 2 1 3 5 5 C 1.50703 * 109.46578 * 182.41188 * 4 2 1 6 6 H 1.07992 * 120.00423 * 355.27894 * 5 4 2 7 7 C 1.37882 * 119.99603 * 175.28078 * 5 4 2 8 8 N 1.31514 * 120.00068 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99894 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46859 * 90.00255 * 9 7 5 11 11 H 1.48503 * 109.46704 * 209.99767 * 9 7 5 12 12 H 1.48502 * 109.47089 * 329.99698 * 9 7 5 13 13 N 1.46901 * 109.47146 * 240.00531 * 2 1 3 14 14 C 1.46592 * 111.00046 * 315.15699 * 13 2 1 15 15 C 1.52276 * 110.96471 * 209.09709 * 14 13 2 16 16 C 1.51623 * 112.86536 * 293.13010 * 15 14 13 17 17 O 1.43198 * 110.60802 * 64.31414 * 16 15 14 18 18 C 1.36299 * 115.44900 * 275.60951 * 17 16 15 19 19 C 1.38543 * 120.03598 * 249.74230 * 18 17 16 20 20 C 1.38360 * 119.72979 * 178.40923 * 19 18 17 21 21 C 1.38254 * 120.26810 * 359.97438 * 20 19 18 22 22 C 1.38319 * 120.19149 * 0.28191 * 21 20 19 23 23 C 1.38619 * 119.95358 * 68.73758 * 18 17 16 24 24 H 1.09000 * 109.47502 * 308.36343 * 1 2 3 25 25 H 1.09003 * 109.47364 * 68.36680 * 1 2 3 26 26 H 1.08999 * 109.46995 * 188.36392 * 1 2 3 27 27 H 1.08999 * 109.46670 * 302.40645 * 4 2 1 28 28 H 1.08993 * 109.47400 * 62.41205 * 4 2 1 29 29 H 0.97001 * 119.99854 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.18103 * 88.71397 * 14 13 2 31 31 H 1.09001 * 109.17536 * 329.47726 * 14 13 2 32 32 H 1.09000 * 108.80430 * 172.26086 * 15 14 13 33 33 H 1.09003 * 108.71864 * 53.94658 * 15 14 13 34 34 H 1.08993 * 109.24565 * 304.02329 * 16 15 14 35 35 H 1.08999 * 109.21648 * 184.58272 * 16 15 14 36 36 H 1.08002 * 120.13653 * 358.43343 * 19 18 17 37 37 H 1.08004 * 119.86816 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.90816 * 180.30280 * 21 20 19 39 39 H 1.07999 * 120.17210 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5458 -0.6697 1.2793 6 1 4.0881 -0.2399 0.4502 7 6 4.2312 -1.1713 2.3655 8 7 5.5453 -1.1258 2.3921 9 14 3.2931 -1.9142 3.7999 10 1 3.0994 -3.3677 3.5651 11 1 4.0646 -1.7137 5.0529 12 1 1.9696 -1.2518 3.9221 13 7 2.0197 -0.6924 -1.1995 14 6 1.2799 -1.9375 -1.4262 15 6 2.1490 -2.9658 -2.1375 16 6 2.4996 -2.5607 -3.5559 17 8 3.3047 -1.3765 -3.5575 18 6 2.6177 -0.2011 -3.4916 19 6 2.5754 0.6399 -4.5917 20 6 1.8489 1.8158 -4.5289 21 6 1.1665 2.1525 -3.3746 22 6 1.2104 1.3182 -2.2722 23 6 1.9439 0.1425 -2.3300 24 1 -0.3634 0.6378 0.8058 25 1 -0.3634 0.3789 -0.9553 26 1 -0.3633 -1.0167 0.1495 27 1 1.6418 -0.2331 2.1386 28 1 1.7125 -1.7607 1.2277 29 1 6.0274 -1.4791 3.1561 30 1 0.4022 -1.7265 -2.0370 31 1 0.9584 -2.3427 -0.4667 32 1 1.6170 -3.9167 -2.1651 33 1 3.0712 -3.0962 -1.5712 34 1 1.5819 -2.3721 -4.1129 35 1 3.0505 -3.3704 -4.0345 36 1 3.1070 0.3787 -5.4948 37 1 1.8140 2.4729 -5.3853 38 1 0.5972 3.0693 -3.3336 39 1 0.6769 1.5813 -1.3708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:20 Heat of formation + Delta-G solvation = 7.759757 kcal Electronic energy + Delta-G solvation = -20557.089743 eV Core-core repulsion = 17658.490082 eV Total energy + Delta-G solvation = -2898.599661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63513 -37.61385 -37.01782 -33.18669 -32.28024 -31.15937 -30.24408 -27.96236 -27.62043 -25.79511 -23.01025 -22.37747 -21.34416 -21.03295 -18.81673 -17.79141 -16.59577 -16.44116 -15.94990 -14.93475 -14.88406 -14.51194 -14.34096 -14.07953 -13.72059 -13.31689 -12.77286 -12.56769 -12.31245 -12.23684 -11.86090 -11.80096 -11.70914 -11.38462 -11.31793 -10.79338 -10.60771 -10.42858 -10.14597 -9.84504 -9.71130 -9.56092 -9.14028 -8.93703 -8.44138 -8.39071 -7.34039 -5.90571 -3.85761 1.50636 1.59996 3.33688 3.41625 3.42387 3.73535 4.08631 4.27672 4.52618 5.05831 5.11358 5.14510 5.19976 5.36117 5.42877 5.44304 5.49931 5.58321 5.63420 5.69580 5.74603 5.79522 5.82581 5.99601 6.08118 6.16217 6.28441 6.34424 6.48667 6.58211 6.62449 6.66125 6.74675 6.92106 7.04531 7.27154 7.58876 7.67592 7.89199 7.99185 8.71399 9.24083 9.71079 11.23357 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.006885 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.142006 B = 4066.007053 C = 4360.370062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.090 3.910 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.063 3.937 8 N -0.905 5.905 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.455 5.455 14 C 0.064 3.936 15 C -0.155 4.155 16 C 0.069 3.931 17 O -0.315 6.315 18 C 0.086 3.914 19 C -0.120 4.120 20 C -0.137 4.137 21 C -0.113 4.113 22 C -0.163 4.163 23 C 0.092 3.908 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.011 0.989 29 H 0.260 0.740 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 0.909 -12.483 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.017 4.017 3 H 0.101 0.899 4 C -0.042 4.042 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.169 5.169 14 C -0.061 4.061 15 C -0.193 4.193 16 C -0.006 4.006 17 O -0.231 6.231 18 C 0.041 3.959 19 C -0.139 4.139 20 C -0.156 4.156 21 C -0.131 4.131 22 C -0.184 4.184 23 C -0.007 4.007 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.124 0.628 -12.220 16.536 hybrid contribution -1.202 -0.269 0.906 1.529 sum -12.326 0.359 -11.313 16.735 Atomic orbital electron populations 1.22835 0.98690 1.02228 1.01676 1.21924 0.90508 0.98865 0.90416 0.89902 1.19677 0.98283 0.94837 0.91385 1.21054 0.88958 1.38658 1.04551 0.90174 1.25016 0.94654 0.95991 0.98008 1.69920 1.06312 1.47493 1.30769 0.86921 0.80396 0.79876 0.82851 1.20584 1.21555 1.19288 1.59479 1.52953 1.03957 1.00512 1.21832 0.93536 0.90011 1.00748 1.21839 1.02628 0.98071 0.96770 1.22489 0.94841 0.86713 0.96523 1.86413 1.31988 1.11572 1.93104 1.18366 0.96192 0.89127 0.92257 1.21063 0.99990 0.95744 0.97087 1.20860 0.99406 0.97025 0.98342 1.21012 0.99789 0.99088 0.93250 1.21757 1.00366 0.96237 1.00020 1.19621 0.95199 0.94839 0.91008 0.91991 0.92464 0.92486 0.95829 0.97090 0.93034 0.94939 0.89542 0.90827 0.89049 0.93558 0.88795 0.85605 0.86181 0.86323 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 7.55 37.16 0.28 -2.72 16 2 C 0.09 1.76 1.77 -67.71 -0.12 1.64 16 3 H 0.08 1.71 6.83 -51.93 -0.35 1.35 16 4 C 0.00 -0.10 3.55 -27.88 -0.10 -0.20 16 5 C -0.49 -14.18 9.35 -34.44 -0.32 -14.50 16 6 H 0.08 2.58 7.92 -52.49 -0.42 2.17 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -28.60 13.96 55.43 0.77 -27.83 16 9 Si 0.87 21.82 27.56 -169.99 -4.69 17.13 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.37 6.41 56.52 0.36 -6.01 16 13 N -0.45 -8.92 3.89 -164.06 -0.64 -9.56 16 14 C 0.06 1.07 3.92 -4.36 -0.02 1.05 16 15 C -0.15 -2.39 5.85 -27.80 -0.16 -2.55 16 16 C 0.07 1.00 6.52 36.46 0.24 1.23 16 17 O -0.31 -5.75 10.17 -20.70 -0.21 -5.96 16 18 C 0.09 1.52 5.68 -39.33 -0.22 1.30 16 19 C -0.12 -1.76 10.00 -39.42 -0.39 -2.15 16 20 C -0.14 -1.78 10.04 -39.53 -0.40 -2.17 16 21 C -0.11 -1.51 10.04 -39.55 -0.40 -1.91 16 22 C -0.16 -2.56 7.65 -39.38 -0.30 -2.86 16 23 C 0.09 1.66 5.01 -83.45 -0.42 1.24 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.79 5.58 -51.93 -0.29 0.51 16 26 H 0.06 0.84 6.71 -51.93 -0.35 0.49 16 27 H 0.02 0.55 6.87 -51.93 -0.36 0.20 16 28 H 0.01 0.26 6.41 -51.93 -0.33 -0.08 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.03 0.49 7.69 -51.93 -0.40 0.09 16 31 H 0.09 1.46 5.44 -51.93 -0.28 1.18 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.14 2.04 4.48 -52.49 -0.24 1.81 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -32.70 299.49 -8.24 -40.94 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.56 Total: 1.59 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.43 Total: -20.84 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.13 Total: -37.38 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.21 Total: -5.96 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.69 Total: 17.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.70 -8.24 -40.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.701 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds