Wall clock time and date at job start Mon Mar 30 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46677 * 2 1 4 4 C 1.52998 * 109.47163 * 120.00584 * 2 1 3 5 5 C 1.50703 * 109.46578 * 182.41188 * 4 2 1 6 6 H 1.07992 * 120.00423 * 355.27894 * 5 4 2 7 7 C 1.37882 * 119.99603 * 175.28078 * 5 4 2 8 8 N 1.31514 * 120.00068 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99894 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46859 * 90.00255 * 9 7 5 11 11 H 1.48503 * 109.46704 * 209.99767 * 9 7 5 12 12 H 1.48502 * 109.47089 * 329.99698 * 9 7 5 13 13 N 1.46901 * 109.47146 * 240.00531 * 2 1 3 14 14 C 1.46592 * 111.00046 * 315.15699 * 13 2 1 15 15 C 1.52276 * 110.96471 * 209.09709 * 14 13 2 16 16 C 1.51623 * 112.86536 * 293.13010 * 15 14 13 17 17 O 1.43198 * 110.60802 * 64.31414 * 16 15 14 18 18 C 1.36299 * 115.44900 * 275.60951 * 17 16 15 19 19 C 1.38543 * 120.03598 * 249.74230 * 18 17 16 20 20 C 1.38360 * 119.72979 * 178.40923 * 19 18 17 21 21 C 1.38254 * 120.26810 * 359.97438 * 20 19 18 22 22 C 1.38319 * 120.19149 * 0.28191 * 21 20 19 23 23 C 1.38619 * 119.95358 * 68.73758 * 18 17 16 24 24 H 1.09000 * 109.47502 * 308.36343 * 1 2 3 25 25 H 1.09003 * 109.47364 * 68.36680 * 1 2 3 26 26 H 1.08999 * 109.46995 * 188.36392 * 1 2 3 27 27 H 1.08999 * 109.46670 * 302.40645 * 4 2 1 28 28 H 1.08993 * 109.47400 * 62.41205 * 4 2 1 29 29 H 0.97001 * 119.99854 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.18103 * 88.71397 * 14 13 2 31 31 H 1.09001 * 109.17536 * 329.47726 * 14 13 2 32 32 H 1.09000 * 108.80430 * 172.26086 * 15 14 13 33 33 H 1.09003 * 108.71864 * 53.94658 * 15 14 13 34 34 H 1.08993 * 109.24565 * 304.02329 * 16 15 14 35 35 H 1.08999 * 109.21648 * 184.58272 * 16 15 14 36 36 H 1.08002 * 120.13653 * 358.43343 * 19 18 17 37 37 H 1.08004 * 119.86816 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.90816 * 180.30280 * 21 20 19 39 39 H 1.07999 * 120.17210 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5458 -0.6697 1.2793 6 1 4.0881 -0.2399 0.4502 7 6 4.2312 -1.1713 2.3655 8 7 5.5453 -1.1258 2.3921 9 14 3.2931 -1.9142 3.7999 10 1 3.0994 -3.3677 3.5651 11 1 4.0646 -1.7137 5.0529 12 1 1.9696 -1.2518 3.9221 13 7 2.0197 -0.6924 -1.1995 14 6 1.2799 -1.9375 -1.4262 15 6 2.1490 -2.9658 -2.1375 16 6 2.4996 -2.5607 -3.5559 17 8 3.3047 -1.3765 -3.5575 18 6 2.6177 -0.2011 -3.4916 19 6 2.5754 0.6399 -4.5917 20 6 1.8489 1.8158 -4.5289 21 6 1.1665 2.1525 -3.3746 22 6 1.2104 1.3182 -2.2722 23 6 1.9439 0.1425 -2.3300 24 1 -0.3634 0.6378 0.8058 25 1 -0.3634 0.3789 -0.9553 26 1 -0.3633 -1.0167 0.1495 27 1 1.6418 -0.2331 2.1386 28 1 1.7125 -1.7607 1.2277 29 1 6.0274 -1.4791 3.1561 30 1 0.4022 -1.7265 -2.0370 31 1 0.9584 -2.3427 -0.4667 32 1 1.6170 -3.9167 -2.1651 33 1 3.0712 -3.0962 -1.5712 34 1 1.5819 -2.3721 -4.1129 35 1 3.0505 -3.3704 -4.0345 36 1 3.1070 0.3787 -5.4948 37 1 1.8140 2.4729 -5.3853 38 1 0.5972 3.0693 -3.3336 39 1 0.6769 1.5813 -1.3708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:20 Heat of formation + Delta-G solvation = -13.616508 kcal Electronic energy + Delta-G solvation = -20558.016687 eV Core-core repulsion = 17658.490082 eV Total energy + Delta-G solvation = -2899.526606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88173 -38.96144 -38.18339 -35.09370 -33.80515 -32.68011 -31.40575 -29.73627 -28.83901 -27.02285 -24.83312 -23.60269 -22.69063 -22.28496 -20.29145 -19.03014 -18.80232 -17.74357 -17.18028 -16.39975 -16.08149 -15.98776 -15.71636 -15.36496 -15.17144 -14.66695 -14.50296 -13.99633 -13.80127 -13.61274 -13.49744 -13.12140 -12.93448 -12.66930 -12.56563 -12.48030 -11.97599 -11.81909 -11.72268 -11.61182 -11.41132 -11.20984 -10.87752 -10.69892 -10.23314 -9.55639 -8.61359 -8.19367 -6.20078 0.36986 0.45519 1.34754 1.37316 1.47936 2.39585 2.61721 2.81651 3.06367 3.17159 3.83916 3.92836 4.01284 4.05087 4.21355 4.25520 4.32920 4.38179 4.48296 4.51956 4.56278 4.60747 4.66545 4.78443 4.85285 4.92874 5.01005 5.03901 5.09833 5.18578 5.30295 5.38866 5.47964 5.51979 5.60759 5.72096 5.88093 6.25633 6.34621 6.47898 6.75025 6.89217 7.40558 8.98715 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.006885 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.142006 B = 4066.007053 C = 4360.370062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.094 3.906 3 H 0.062 0.938 4 C 0.000 4.000 5 C -0.494 4.494 6 H 0.025 0.975 7 C -0.005 4.005 8 N -0.960 5.960 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.241 1.241 13 N -0.488 5.488 14 C 0.063 3.937 15 C -0.152 4.152 16 C 0.066 3.934 17 O -0.347 6.347 18 C 0.058 3.942 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.174 4.174 23 C 0.062 3.938 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.018 0.982 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 1.219 -13.255 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.038 4.038 5 C -0.532 4.532 6 H 0.043 0.957 7 C -0.200 4.200 8 N -0.603 5.603 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.165 1.165 13 N -0.204 5.204 14 C -0.062 4.062 15 C -0.190 4.190 16 C -0.008 4.008 17 O -0.264 6.264 18 C 0.012 3.988 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.127 4.127 22 C -0.194 4.194 23 C -0.035 4.035 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.161 0.839 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.257 0.947 -13.014 19.326 hybrid contribution -0.153 -0.295 1.004 1.058 sum -14.410 0.652 -12.010 18.770 Atomic orbital electron populations 1.22674 0.94899 1.03237 1.03220 1.21690 0.93398 0.97034 0.89182 0.91985 1.19605 0.94443 0.95829 0.93921 1.21265 0.91887 1.37433 1.02662 0.95677 1.26033 0.95561 0.96725 1.01654 1.70115 1.08627 1.49446 1.32084 0.85687 0.79728 0.79229 0.78083 1.19611 1.21476 1.16466 1.59395 1.54542 1.05262 1.01174 1.21898 0.94184 0.89316 1.00825 1.21858 1.00786 0.99588 0.96814 1.22691 0.95806 0.86182 0.96119 1.86352 1.33865 1.12870 1.93294 1.18761 0.97038 0.89651 0.93333 1.21357 1.00201 0.95894 0.96919 1.21308 0.97553 0.96400 0.99319 1.21420 0.99341 0.99564 0.92386 1.21917 1.00461 0.95906 1.01165 1.19800 0.97022 0.95886 0.90825 0.90628 0.90755 0.91646 0.95112 0.96382 0.93025 0.92927 0.90217 0.87369 0.93519 0.91504 0.86735 0.83933 0.82467 0.82991 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.19 7.55 71.98 0.54 -4.65 16 2 C 0.09 3.71 1.77 44.91 0.08 3.79 16 3 H 0.06 2.63 6.83 -2.39 -0.02 2.62 16 4 C 0.00 -0.02 3.55 29.85 0.11 0.08 16 5 C -0.49 -29.62 9.35 25.60 0.24 -29.38 16 6 H 0.02 1.73 7.92 -2.91 -0.02 1.71 16 7 C -0.01 -0.31 5.47 84.66 0.46 0.15 16 8 N -0.96 -63.43 13.96 21.45 0.30 -63.13 16 9 Si 0.95 45.41 27.56 68.60 1.89 47.30 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.24 -10.43 6.41 99.48 0.64 -9.79 16 13 N -0.49 -19.56 3.89 -672.97 -2.62 -22.18 16 14 C 0.06 2.08 3.92 86.12 0.34 2.42 16 15 C -0.15 -4.72 5.85 29.90 0.17 -4.55 16 16 C 0.07 1.88 6.52 71.53 0.47 2.35 16 17 O -0.35 -13.00 10.17 -96.98 -0.99 -13.99 16 18 C 0.06 2.03 5.68 22.43 0.13 2.16 16 19 C -0.12 -3.47 10.00 22.37 0.22 -3.25 16 20 C -0.13 -2.89 10.04 22.30 0.22 -2.67 16 21 C -0.11 -2.59 10.04 22.29 0.22 -2.37 16 22 C -0.17 -5.25 7.65 22.40 0.17 -5.08 16 23 C 0.06 2.26 5.01 37.91 0.19 2.45 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 25 H 0.07 1.88 5.58 -2.39 -0.01 1.87 16 26 H 0.06 1.76 6.71 -2.39 -0.02 1.74 16 27 H 0.03 1.40 6.87 -2.39 -0.02 1.38 16 28 H 0.02 0.82 6.41 -2.39 -0.02 0.81 16 29 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 31 H 0.08 2.65 5.44 -2.39 -0.01 2.63 16 32 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.60 7.92 -2.39 -0.02 1.58 16 35 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.14 4.02 4.48 -2.91 -0.01 4.01 16 Total: -1.00 -75.97 299.49 3.12 -72.85 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.97 Total: 17.69 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 3.57 Total: -38.53 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -2.32 Total: -85.32 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.99 Total: -13.99 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.89 Total: 47.30 kcal Total: -75.97 3.12 -72.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.234 kcal (2) G-P(sol) polarization free energy of solvation -75.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds