Wall clock time and date at job start Mon Mar 30 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47233 * 2 1 4 4 C 1.53003 * 109.47169 * 119.99586 * 2 1 3 5 5 C 1.50694 * 109.47215 * 185.00462 * 4 2 1 6 6 H 1.07999 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00117 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00147 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47431 * 59.99499 * 9 7 5 11 11 H 1.48503 * 109.46972 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46861 * 299.99187 * 9 7 5 13 13 N 1.46897 * 109.47222 * 239.99604 * 2 1 3 14 14 C 1.46907 * 110.99790 * 84.33926 * 13 2 1 15 15 H 1.08998 * 109.68806 * 325.48321 * 14 13 2 16 16 C 1.53404 * 109.69133 * 204.93351 * 14 13 2 17 17 O 1.42827 * 108.37700 * 175.62800 * 16 14 13 18 18 C 1.35841 * 117.84964 * 49.27592 * 17 16 14 19 19 C 1.39150 * 118.50222 * 162.76518 * 18 17 16 20 20 C 1.37970 * 120.21199 * 179.30959 * 19 18 17 21 21 C 1.38290 * 119.95554 * 0.24407 * 20 19 18 22 22 C 1.38105 * 119.98815 * 0.08904 * 21 20 19 23 23 C 1.38373 * 121.80173 * 342.73890 * 18 17 16 24 24 C 1.50766 * 121.40424 * 0.78662 * 23 18 17 25 25 H 1.08994 * 109.47055 * 184.78147 * 1 2 3 26 26 H 1.08998 * 109.47282 * 304.78600 * 1 2 3 27 27 H 1.09000 * 109.47034 * 64.78032 * 1 2 3 28 28 H 1.09006 * 109.47218 * 305.00255 * 4 2 1 29 29 H 1.08998 * 109.47127 * 64.99868 * 4 2 1 30 30 H 0.96999 * 120.00277 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99947 * 208.28900 * 13 2 1 32 32 H 1.08993 * 109.68430 * 55.90203 * 16 14 13 33 33 H 1.09006 * 109.71346 * 295.36445 * 16 14 13 34 34 H 1.07993 * 119.89163 * 359.59333 * 19 18 17 35 35 H 1.07990 * 120.02153 * 180.21472 * 20 19 18 36 36 H 1.08003 * 120.00706 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.84281 * 180.02562 * 22 21 20 38 38 H 1.08997 * 109.43589 * 102.32561 * 24 23 18 39 39 H 1.08994 * 109.43781 * 222.19123 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6147 1.3128 6 1 4.0790 -0.0860 0.5393 7 6 4.2304 -1.1933 2.3579 8 7 3.5764 -1.8376 3.2996 9 14 6.0922 -1.0619 2.4363 10 1 6.4855 0.3687 2.4959 11 1 6.5871 -1.7618 3.6490 12 1 6.6839 -1.6881 1.2268 13 7 2.0197 -0.6926 -1.1994 14 6 2.0676 0.2186 -2.3507 15 1 1.2427 0.9286 -2.2917 16 6 1.9645 -0.5870 -3.6521 17 8 1.9107 0.3297 -4.7461 18 6 2.8405 1.3190 -4.7914 19 6 3.0426 1.9856 -5.9960 20 6 3.9680 3.0056 -6.0782 21 6 4.7013 3.3643 -4.9620 22 6 4.5082 2.7003 -3.7665 23 6 3.5820 1.6743 -3.6785 24 6 3.4065 0.9666 -2.3588 25 1 -0.3633 -1.0240 0.0857 26 1 -0.3634 0.5863 0.8440 27 1 -0.3633 0.4379 -0.9297 28 1 1.6054 -0.2616 2.1371 29 1 1.7517 -1.7714 1.2057 30 1 4.0607 -2.2443 4.0351 31 1 2.9223 -1.1114 -1.0319 32 1 1.0596 -1.1944 -3.6372 33 1 2.8375 -1.2314 -3.7558 34 1 2.4701 1.7067 -6.8681 35 1 4.1199 3.5232 -7.0137 36 1 5.4256 4.1630 -5.0253 37 1 5.0819 2.9827 -2.8961 38 1 4.2263 0.2633 -2.2126 39 1 3.4094 1.6988 -1.5514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:40 Heat of formation + Delta-G solvation = -30.296976 kcal Electronic energy + Delta-G solvation = -19591.478395 eV Core-core repulsion = 16691.228470 eV Total energy + Delta-G solvation = -2900.249925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61591 -37.63636 -36.77339 -33.78405 -32.39006 -30.81745 -30.22790 -27.55117 -27.44630 -25.60362 -23.37494 -22.72514 -22.11441 -19.84059 -19.53353 -17.63859 -16.43959 -16.39376 -16.03472 -15.21500 -14.81897 -14.49158 -14.36448 -13.95406 -13.71640 -13.34899 -13.10160 -12.90412 -12.73928 -11.92569 -11.79677 -11.71528 -11.45654 -11.34716 -11.20553 -11.07158 -10.81094 -10.62539 -10.56327 -10.27605 -10.24592 -9.31640 -9.12913 -8.77525 -8.44623 -8.12948 -7.78457 -6.07585 -4.11325 1.32201 1.44087 3.26543 3.32416 3.33483 3.38580 3.77054 4.38266 4.59511 4.76114 4.80965 4.98576 5.02675 5.23856 5.28496 5.32379 5.42335 5.49198 5.63601 5.76729 5.80824 5.91187 5.98438 6.09360 6.16281 6.18143 6.28045 6.30918 6.48523 6.50176 6.55764 6.79449 6.86503 6.87217 7.39596 7.54548 7.57235 7.90088 7.94568 8.13638 8.30638 8.94489 9.53189 11.03204 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.005461 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.587148 B = 5126.043534 C = 6053.978289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 H 0.031 0.969 4 C 0.021 3.979 5 C -0.526 4.526 6 H 0.051 0.949 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.672 5.672 14 C 0.055 3.945 15 H 0.085 0.915 16 C 0.071 3.929 17 O -0.318 6.318 18 C 0.132 3.868 19 C -0.153 4.153 20 C -0.094 4.094 21 C -0.156 4.156 22 C -0.086 4.086 23 C -0.148 4.148 24 C -0.110 4.110 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.358 0.642 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 7.093 -15.549 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.306 5.306 14 C -0.057 4.057 15 H 0.103 0.897 16 C -0.004 4.004 17 O -0.231 6.231 18 C 0.087 3.913 19 C -0.172 4.172 20 C -0.113 4.113 21 C -0.175 4.175 22 C -0.104 4.104 23 C -0.150 4.150 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.180 0.820 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.535 6.664 -15.649 17.078 hybrid contribution 2.055 0.628 0.652 2.245 sum 0.519 7.293 -14.997 16.684 Atomic orbital electron populations 1.21822 0.96593 1.01485 0.99583 1.21642 0.93369 0.95993 0.91071 0.95072 1.19276 0.95441 0.96207 0.90729 1.21114 0.92141 1.34737 1.08438 0.93048 1.24975 0.98158 0.95135 0.95689 1.69944 1.35628 1.35373 1.11890 0.86725 0.85959 0.78183 0.77538 1.20359 1.21217 1.20211 1.60568 1.34500 1.31502 1.04015 1.22228 0.96335 0.94467 0.92626 0.89728 1.23030 1.03852 0.89772 0.83790 1.85987 1.49881 1.39373 1.47904 1.18760 0.89786 0.89685 0.93090 1.20568 1.01587 0.99166 0.95875 1.20868 0.95481 0.96373 0.98528 1.20986 1.01682 1.01591 0.93202 1.20987 0.96745 0.94647 0.98016 1.19982 0.99892 0.99926 0.95158 1.21402 0.99377 1.00217 0.93841 0.92553 0.93276 0.94350 0.95962 0.95524 0.92834 0.82014 0.86789 0.91898 0.85495 0.85759 0.86149 0.85884 0.89898 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.41 37.16 0.35 -2.04 16 2 C 0.09 1.75 2.42 -67.71 -0.16 1.59 16 3 H 0.03 0.64 7.36 -51.93 -0.38 0.25 16 4 C 0.02 0.51 4.58 -27.88 -0.13 0.38 16 5 C -0.53 -13.89 8.12 -34.44 -0.28 -14.17 16 6 H 0.05 1.30 7.48 -52.49 -0.39 0.91 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 N -0.67 -12.08 6.08 -99.32 -0.60 -12.68 16 14 C 0.05 0.85 2.50 -67.31 -0.17 0.69 16 15 H 0.08 1.37 7.07 -51.93 -0.37 1.00 16 16 C 0.07 1.00 6.64 37.37 0.25 1.25 16 17 O -0.32 -4.72 10.27 -19.24 -0.20 -4.91 16 18 C 0.13 1.92 6.47 -39.19 -0.25 1.66 16 19 C -0.15 -1.92 9.94 -39.34 -0.39 -2.31 16 20 C -0.09 -1.04 10.04 -39.66 -0.40 -1.43 16 21 C -0.16 -1.78 10.04 -39.61 -0.40 -2.18 16 22 C -0.09 -1.12 9.67 -39.53 -0.38 -1.51 16 23 C -0.15 -2.16 5.75 -104.44 -0.60 -2.76 16 24 C -0.11 -1.69 5.17 -27.66 -0.14 -1.83 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.60 7.34 -51.93 -0.38 0.22 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.36 6.98 6.78 -39.29 -0.27 6.72 16 32 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 39 H 0.08 1.34 7.71 -51.93 -0.40 0.94 16 LS Contribution 317.74 15.07 4.79 4.79 Total: -1.00 -28.44 317.74 -9.07 -37.50 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.96 Total: 5.59 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.81 Total: -21.04 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.13 Total: -37.86 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.20 Total: -4.91 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.44 -9.07 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.208 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds