Wall clock time and date at job start Mon Mar 30 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47233 * 2 1 4 4 C 1.53003 * 109.47169 * 119.99586 * 2 1 3 5 5 C 1.50694 * 109.47215 * 185.00462 * 4 2 1 6 6 H 1.07999 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00117 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00147 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47431 * 59.99499 * 9 7 5 11 11 H 1.48503 * 109.46972 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46861 * 299.99187 * 9 7 5 13 13 N 1.46897 * 109.47222 * 239.99604 * 2 1 3 14 14 C 1.46907 * 110.99790 * 84.33926 * 13 2 1 15 15 H 1.08998 * 109.68806 * 325.48321 * 14 13 2 16 16 C 1.53404 * 109.69133 * 204.93351 * 14 13 2 17 17 O 1.42827 * 108.37700 * 175.62800 * 16 14 13 18 18 C 1.35841 * 117.84964 * 49.27592 * 17 16 14 19 19 C 1.39150 * 118.50222 * 162.76518 * 18 17 16 20 20 C 1.37970 * 120.21199 * 179.30959 * 19 18 17 21 21 C 1.38290 * 119.95554 * 0.24407 * 20 19 18 22 22 C 1.38105 * 119.98815 * 0.08904 * 21 20 19 23 23 C 1.38373 * 121.80173 * 342.73890 * 18 17 16 24 24 C 1.50766 * 121.40424 * 0.78662 * 23 18 17 25 25 H 1.08994 * 109.47055 * 184.78147 * 1 2 3 26 26 H 1.08998 * 109.47282 * 304.78600 * 1 2 3 27 27 H 1.09000 * 109.47034 * 64.78032 * 1 2 3 28 28 H 1.09006 * 109.47218 * 305.00255 * 4 2 1 29 29 H 1.08998 * 109.47127 * 64.99868 * 4 2 1 30 30 H 0.96999 * 120.00277 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99947 * 208.28900 * 13 2 1 32 32 H 1.08993 * 109.68430 * 55.90203 * 16 14 13 33 33 H 1.09006 * 109.71346 * 295.36445 * 16 14 13 34 34 H 1.07993 * 119.89163 * 359.59333 * 19 18 17 35 35 H 1.07990 * 120.02153 * 180.21472 * 20 19 18 36 36 H 1.08003 * 120.00706 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.84281 * 180.02562 * 22 21 20 38 38 H 1.08997 * 109.43589 * 102.32561 * 24 23 18 39 39 H 1.08994 * 109.43781 * 222.19123 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6147 1.3128 6 1 4.0790 -0.0860 0.5393 7 6 4.2304 -1.1933 2.3579 8 7 3.5764 -1.8376 3.2996 9 14 6.0922 -1.0619 2.4363 10 1 6.4855 0.3687 2.4959 11 1 6.5871 -1.7618 3.6490 12 1 6.6839 -1.6881 1.2268 13 7 2.0197 -0.6926 -1.1994 14 6 2.0676 0.2186 -2.3507 15 1 1.2427 0.9286 -2.2917 16 6 1.9645 -0.5870 -3.6521 17 8 1.9107 0.3297 -4.7461 18 6 2.8405 1.3190 -4.7914 19 6 3.0426 1.9856 -5.9960 20 6 3.9680 3.0056 -6.0782 21 6 4.7013 3.3643 -4.9620 22 6 4.5082 2.7003 -3.7665 23 6 3.5820 1.6743 -3.6785 24 6 3.4065 0.9666 -2.3588 25 1 -0.3633 -1.0240 0.0857 26 1 -0.3634 0.5863 0.8440 27 1 -0.3633 0.4379 -0.9297 28 1 1.6054 -0.2616 2.1371 29 1 1.7517 -1.7714 1.2057 30 1 4.0607 -2.2443 4.0351 31 1 2.9223 -1.1114 -1.0319 32 1 1.0596 -1.1944 -3.6372 33 1 2.8375 -1.2314 -3.7558 34 1 2.4701 1.7067 -6.8681 35 1 4.1199 3.5232 -7.0137 36 1 5.4256 4.1630 -5.0253 37 1 5.0819 2.9827 -2.8961 38 1 4.2263 0.2633 -2.2126 39 1 3.4094 1.6988 -1.5514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:40 Heat of formation + Delta-G solvation = -46.599816 kcal Electronic energy + Delta-G solvation = -19592.185339 eV Core-core repulsion = 16691.228470 eV Total energy + Delta-G solvation = -2900.956869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.69445 -38.81318 -38.08960 -35.39013 -34.12258 -32.07798 -31.21438 -29.34415 -28.85861 -26.72250 -25.17503 -23.91756 -23.20464 -21.24743 -20.92836 -18.71172 -18.45538 -17.54486 -17.18668 -16.71892 -16.15500 -16.09393 -15.46213 -15.23814 -14.91325 -14.61547 -14.44160 -14.13210 -13.98872 -13.57890 -13.44391 -13.20465 -12.89644 -12.64797 -12.63392 -12.48716 -12.41818 -12.19839 -12.06452 -11.67063 -11.54496 -11.21813 -11.00887 -10.57282 -9.75278 -9.33066 -9.08596 -8.19352 -6.29544 0.35807 0.46902 1.39385 1.40320 1.48003 2.32162 2.39332 2.79897 3.10828 3.29130 3.66530 3.68499 3.88164 4.00715 4.15492 4.26158 4.30416 4.40410 4.50707 4.55519 4.56698 4.65342 4.71222 4.79879 4.83940 4.95798 5.05613 5.09469 5.19061 5.32707 5.36276 5.47905 5.52357 5.53703 5.59694 5.83836 5.87256 6.19552 6.28084 6.48266 6.54858 6.85451 7.39248 8.92096 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.005461 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.587148 B = 5126.043534 C = 6053.978289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.098 3.902 3 H 0.026 0.974 4 C 0.028 3.972 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.669 5.669 14 C 0.060 3.940 15 H 0.081 0.919 16 C 0.077 3.923 17 O -0.325 6.325 18 C 0.108 3.892 19 C -0.159 4.159 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.100 4.100 23 C -0.168 4.168 24 C -0.103 4.103 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.059 0.941 28 H -0.005 1.005 29 H 0.000 1.000 30 H 0.262 0.738 31 H 0.348 0.652 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.143 0.857 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 8.446 -17.810 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.011 4.011 3 H 0.044 0.956 4 C -0.009 4.009 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.302 5.302 14 C -0.051 4.051 15 H 0.099 0.901 16 C 0.002 3.998 17 O -0.238 6.238 18 C 0.063 3.937 19 C -0.177 4.177 20 C -0.105 4.105 21 C -0.171 4.171 22 C -0.118 4.118 23 C -0.169 4.169 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.013 0.987 29 H 0.018 0.982 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.091 0.909 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.578 8.033 -17.933 19.658 hybrid contribution 1.753 0.271 1.295 2.197 sum 1.175 8.304 -16.638 18.632 Atomic orbital electron populations 1.21741 0.94505 1.01591 1.00939 1.21423 0.94994 0.94887 0.89833 0.95635 1.19128 0.94902 0.94826 0.92087 1.21479 0.93139 1.34064 1.08349 0.92232 1.25839 1.02999 0.94878 0.95413 1.70081 1.37537 1.36661 1.12688 0.85651 0.80195 0.78408 0.77701 1.19596 1.21189 1.19127 1.60575 1.33818 1.31916 1.03896 1.22200 0.96384 0.94210 0.92283 0.90084 1.22964 1.04509 0.89546 0.82821 1.85974 1.50378 1.39683 1.47765 1.19057 0.90334 0.90310 0.93988 1.20897 1.02000 0.99221 0.95615 1.21306 0.93996 0.95406 0.99768 1.21357 1.01721 1.01553 0.92472 1.21185 0.96690 0.94655 0.99236 1.19962 1.01289 1.01009 0.94652 1.21248 0.98798 0.99713 0.94427 0.92936 0.92796 0.92226 0.98660 0.98183 0.92869 0.83133 0.85683 0.91758 0.83933 0.82275 0.83398 0.85444 0.90871 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.41 71.98 0.68 -3.80 16 2 C 0.10 3.94 2.42 44.92 0.11 4.05 16 3 H 0.03 1.06 7.36 -2.39 -0.02 1.04 16 4 C 0.03 1.42 4.58 29.85 0.14 1.56 16 5 C -0.53 -28.58 8.12 25.60 0.21 -28.38 16 6 H 0.06 3.04 7.48 -2.91 -0.02 3.01 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 9 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.67 -24.19 6.08 -468.13 -2.84 -27.04 16 14 C 0.06 1.86 2.50 45.17 0.11 1.97 16 15 H 0.08 2.57 7.07 -2.39 -0.02 2.55 16 16 C 0.08 2.11 6.64 72.12 0.48 2.59 16 17 O -0.32 -9.25 10.27 -91.77 -0.94 -10.20 16 18 C 0.11 2.99 6.47 22.52 0.15 3.14 16 19 C -0.16 -3.57 9.94 22.43 0.22 -3.35 16 20 C -0.09 -1.59 10.04 22.22 0.22 -1.37 16 21 C -0.15 -3.01 10.04 22.25 0.22 -2.79 16 22 C -0.10 -2.46 9.67 22.30 0.22 -2.24 16 23 C -0.17 -4.76 5.75 -19.75 -0.11 -4.88 16 24 C -0.10 -3.19 5.17 29.99 0.16 -3.03 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.80 7.34 -2.39 -0.02 1.78 16 28 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.35 13.80 6.78 -89.69 -0.61 13.19 16 32 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.16 1.79 8.06 -2.92 -0.02 1.77 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.07 2.35 7.90 -2.39 -0.02 2.33 16 39 H 0.07 2.28 7.71 -2.39 -0.02 2.26 16 Total: -1.00 -61.47 317.74 2.20 -59.27 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.42 Total: 23.55 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 3.26 Total: -35.67 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.56 Total: -82.15 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.94 Total: -10.20 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -61.47 2.20 -59.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.674 kcal (2) G-P(sol) polarization free energy of solvation -61.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds