Wall clock time and date at job start Mon Mar 30 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46862 * 2 1 4 4 C 1.53002 * 109.47535 * 119.99578 * 2 1 3 5 5 C 1.50696 * 109.46997 * 185.00050 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46901 * 109.47529 * 240.00198 * 2 1 3 14 14 C 1.46902 * 110.99704 * 84.99394 * 13 2 1 15 15 C 1.53008 * 109.46934 * 180.02562 * 14 13 2 16 16 H 1.09005 * 110.65987 * 308.21546 * 15 14 13 17 17 C 1.54706 * 110.75049 * 185.00085 * 15 14 13 18 18 C 1.51641 * 101.92439 * 216.38953 * 17 15 14 19 19 C 1.37740 * 132.17126 * 195.40188 * 18 17 15 20 20 C 1.38349 * 119.97856 * 179.64317 * 19 18 17 21 21 C 1.38280 * 119.76688 * 359.97438 * 20 19 18 22 22 C 1.37928 * 120.35371 * 0.17634 * 21 20 19 23 23 C 1.38885 * 107.04213 * 15.38900 * 18 17 15 24 24 O 1.36136 * 111.23321 * 1.06271 * 23 18 17 25 25 H 1.09006 * 109.46862 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47344 * 299.99779 * 1 2 3 27 27 H 1.08996 * 109.47790 * 60.00244 * 1 2 3 28 28 H 1.09005 * 109.46767 * 65.00401 * 4 2 1 29 29 H 1.09002 * 109.47113 * 305.00741 * 4 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99858 * 321.04758 * 13 2 1 32 32 H 1.09003 * 109.47340 * 300.00206 * 14 13 2 33 33 H 1.08997 * 109.47181 * 60.00280 * 14 13 2 34 34 H 1.08998 * 110.93628 * 334.54901 * 17 15 14 35 35 H 1.09001 * 110.93496 * 98.19418 * 17 15 14 36 36 H 1.08003 * 120.01152 * 359.66594 * 19 18 17 37 37 H 1.07997 * 120.11409 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.82367 * 180.18940 * 21 20 19 39 39 H 1.08003 * 119.88239 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3126 6 1 4.0789 -0.0853 0.5395 7 6 4.2305 -1.1933 2.3578 8 7 5.5412 -1.1000 2.4134 9 14 3.3018 -2.1096 3.6946 10 1 2.9401 -1.1654 4.7822 11 1 2.0662 -2.7018 3.1220 12 1 4.1608 -3.1900 4.2424 13 7 2.0197 -0.6924 -1.1994 14 6 2.0824 0.2227 -2.3469 15 6 2.5951 -0.5330 -3.5745 16 1 3.5229 -1.0567 -3.3440 17 6 2.7917 0.4306 -4.7687 18 6 2.3727 -0.4344 -5.9416 19 6 2.5579 -0.3031 -7.3002 20 6 2.0645 -1.2669 -8.1615 21 6 1.3868 -2.3597 -7.6531 22 6 1.1974 -2.4917 -6.2933 23 6 1.6871 -1.5236 -5.4196 24 8 1.5982 -1.4464 -4.0634 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.7518 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1370 30 1 6.0256 -1.5067 3.1488 31 1 1.4496 -1.4979 -1.4101 32 1 1.0870 0.6164 -2.5525 33 1 2.7587 1.0464 -2.1182 34 1 2.1439 1.3024 -4.6765 35 1 3.8356 0.7312 -4.8589 36 1 3.0885 0.5517 -7.6929 37 1 2.2082 -1.1659 -9.2271 38 1 1.0039 -3.1141 -8.3244 39 1 0.6666 -3.3482 -5.9045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:33 Heat of formation + Delta-G solvation = -12.017725 kcal Electronic energy + Delta-G solvation = -19033.187098 eV Core-core repulsion = 16133.729820 eV Total energy + Delta-G solvation = -2899.457277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14302 -37.73724 -36.59474 -33.22146 -32.47223 -31.28416 -30.09118 -28.76102 -27.66941 -24.91824 -22.66155 -22.46829 -21.74301 -21.25054 -19.65574 -17.53121 -16.78268 -16.54913 -16.11650 -15.48470 -14.68409 -14.34477 -14.32544 -13.91363 -13.56812 -13.25144 -13.16288 -12.95126 -12.51350 -12.34451 -12.15550 -11.88671 -11.85451 -11.68367 -11.60103 -11.00548 -10.85761 -10.71563 -10.64504 -10.24883 -9.69100 -9.56231 -9.01701 -9.01410 -8.39655 -8.17905 -7.65555 -5.88516 -3.82079 1.17496 1.28302 3.24489 3.38250 3.46093 3.49814 3.62215 4.30314 4.41233 4.57547 4.71931 4.89754 4.96918 5.13584 5.17818 5.25488 5.32349 5.46500 5.49373 5.57817 5.60122 5.70126 5.82002 5.84292 5.92508 6.00913 6.07713 6.20358 6.33234 6.35086 6.36732 6.50938 6.56661 6.81825 7.17078 7.19471 7.33497 7.78767 7.92981 8.09228 8.74713 9.22136 9.74907 11.25653 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.003879 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.366006 B = 7217.179341 C = 7381.112667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.098 3.902 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.489 4.489 6 H 0.076 0.924 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.268 1.268 12 H -0.290 1.290 13 N -0.662 5.662 14 C 0.067 3.933 15 C 0.084 3.916 16 H 0.101 0.899 17 C -0.106 4.106 18 C -0.175 4.175 19 C -0.071 4.071 20 C -0.156 4.156 21 C -0.087 4.087 22 C -0.144 4.144 23 C 0.115 3.885 24 O -0.300 6.300 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.337 0.663 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 1.562 -19.322 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.094 0.906 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.217 1.217 13 N -0.292 5.292 14 C -0.062 4.062 15 C 0.028 3.972 16 H 0.119 0.881 17 C -0.143 4.143 18 C -0.176 4.176 19 C -0.090 4.090 20 C -0.175 4.175 21 C -0.105 4.105 22 C -0.163 4.163 23 C 0.069 3.931 24 O -0.214 6.214 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.406 1.486 -18.860 20.702 hybrid contribution -1.216 -0.351 0.540 1.376 sum -9.622 1.135 -18.320 20.724 Atomic orbital electron populations 1.22589 0.99359 1.01362 1.00878 1.21559 0.89815 0.98232 0.91513 0.91174 1.19608 0.97800 0.95479 0.91331 1.21034 0.89528 1.33682 1.08444 0.90604 1.25019 0.94696 0.96303 0.97934 1.69915 1.06444 1.46354 1.32341 0.86861 0.80236 0.80014 0.82564 1.20671 1.19262 1.21656 1.60498 1.57928 1.08608 1.02147 1.22066 0.99505 0.95549 0.89121 1.23614 0.91438 0.88719 0.93440 0.88075 1.21836 1.03350 0.98242 0.90882 1.20861 1.04634 0.97027 0.95065 1.20309 0.98622 0.98930 0.91095 1.20986 1.01438 0.95513 0.99524 1.20841 0.97901 0.97855 0.93948 1.20291 1.05172 0.98680 0.92115 1.19665 0.95468 0.93923 0.84057 1.86869 1.53994 1.63939 1.16595 0.92968 0.92440 0.94015 0.96538 0.96941 0.93110 0.84460 0.95190 0.89102 0.89219 0.88805 0.85950 0.85731 0.85404 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 9.16 37.16 0.34 -2.60 16 2 C 0.10 1.91 2.53 -67.71 -0.17 1.74 16 3 H 0.07 1.39 7.80 -51.93 -0.40 0.98 16 4 C 0.00 -0.11 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -13.96 9.39 -34.44 -0.32 -14.29 16 6 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 9 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 N -0.66 -12.33 5.96 -106.72 -0.64 -12.97 16 14 C 0.07 1.02 5.16 -3.82 -0.02 1.00 16 15 C 0.08 1.19 3.82 -25.83 -0.10 1.10 16 16 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 17 C -0.11 -1.23 6.65 -26.52 -0.18 -1.40 16 18 C -0.18 -2.17 6.27 -104.10 -0.65 -2.82 16 19 C -0.07 -0.74 10.03 -39.72 -0.40 -1.14 16 20 C -0.16 -1.47 10.07 -39.52 -0.40 -1.87 16 21 C -0.09 -0.85 10.02 -39.68 -0.40 -1.25 16 22 C -0.14 -1.70 10.06 -39.30 -0.40 -2.10 16 23 C 0.11 1.59 7.04 -38.95 -0.27 1.31 16 24 O -0.30 -4.61 10.64 -20.17 -0.21 -4.83 16 25 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 28 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 29 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 31 H 0.34 6.11 8.32 -39.29 -0.33 5.79 16 32 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 33 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 34 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -32.06 321.02 -9.15 -41.21 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.07 Total: 2.90 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -3.17 Total: -20.85 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.14 Total: -40.79 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.21 Total: -4.83 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.06 -9.15 -41.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.187 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds