Wall clock time and date at job start Mon Mar 30 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46862 * 2 1 4 4 C 1.53002 * 109.47535 * 119.99578 * 2 1 3 5 5 C 1.50696 * 109.46997 * 185.00050 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46901 * 109.47529 * 240.00198 * 2 1 3 14 14 C 1.46902 * 110.99704 * 84.99394 * 13 2 1 15 15 C 1.53008 * 109.46934 * 180.02562 * 14 13 2 16 16 H 1.09005 * 110.65987 * 308.21546 * 15 14 13 17 17 C 1.54706 * 110.75049 * 185.00085 * 15 14 13 18 18 C 1.51641 * 101.92439 * 216.38953 * 17 15 14 19 19 C 1.37740 * 132.17126 * 195.40188 * 18 17 15 20 20 C 1.38349 * 119.97856 * 179.64317 * 19 18 17 21 21 C 1.38280 * 119.76688 * 359.97438 * 20 19 18 22 22 C 1.37928 * 120.35371 * 0.17634 * 21 20 19 23 23 C 1.38885 * 107.04213 * 15.38900 * 18 17 15 24 24 O 1.36136 * 111.23321 * 1.06271 * 23 18 17 25 25 H 1.09006 * 109.46862 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47344 * 299.99779 * 1 2 3 27 27 H 1.08996 * 109.47790 * 60.00244 * 1 2 3 28 28 H 1.09005 * 109.46767 * 65.00401 * 4 2 1 29 29 H 1.09002 * 109.47113 * 305.00741 * 4 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99858 * 321.04758 * 13 2 1 32 32 H 1.09003 * 109.47340 * 300.00206 * 14 13 2 33 33 H 1.08997 * 109.47181 * 60.00280 * 14 13 2 34 34 H 1.08998 * 110.93628 * 334.54901 * 17 15 14 35 35 H 1.09001 * 110.93496 * 98.19418 * 17 15 14 36 36 H 1.08003 * 120.01152 * 359.66594 * 19 18 17 37 37 H 1.07997 * 120.11409 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.82367 * 180.18940 * 21 20 19 39 39 H 1.08003 * 119.88239 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3126 6 1 4.0789 -0.0853 0.5395 7 6 4.2305 -1.1933 2.3578 8 7 5.5412 -1.1000 2.4134 9 14 3.3018 -2.1096 3.6946 10 1 2.9401 -1.1654 4.7822 11 1 2.0662 -2.7018 3.1220 12 1 4.1608 -3.1900 4.2424 13 7 2.0197 -0.6924 -1.1994 14 6 2.0824 0.2227 -2.3469 15 6 2.5951 -0.5330 -3.5745 16 1 3.5229 -1.0567 -3.3440 17 6 2.7917 0.4306 -4.7687 18 6 2.3727 -0.4344 -5.9416 19 6 2.5579 -0.3031 -7.3002 20 6 2.0645 -1.2669 -8.1615 21 6 1.3868 -2.3597 -7.6531 22 6 1.1974 -2.4917 -6.2933 23 6 1.6871 -1.5236 -5.4196 24 8 1.5982 -1.4464 -4.0634 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.7518 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1370 30 1 6.0256 -1.5067 3.1488 31 1 1.4496 -1.4979 -1.4101 32 1 1.0870 0.6164 -2.5525 33 1 2.7587 1.0464 -2.1182 34 1 2.1439 1.3024 -4.6765 35 1 3.8356 0.7312 -4.8589 36 1 3.0885 0.5517 -7.6929 37 1 2.2082 -1.1659 -9.2271 38 1 1.0039 -3.1141 -8.3244 39 1 0.6666 -3.3482 -5.9045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:33 Heat of formation + Delta-G solvation = -32.562762 kcal Electronic energy + Delta-G solvation = -19034.077997 eV Core-core repulsion = 16133.729820 eV Total energy + Delta-G solvation = -2900.348177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10728 -38.78404 -37.93459 -34.89179 -33.93945 -32.66791 -30.93744 -30.17481 -29.22533 -26.07605 -24.50662 -23.41991 -22.70887 -22.28889 -21.31597 -18.77531 -18.49124 -17.72791 -17.19939 -16.59911 -16.12738 -16.01549 -15.48140 -15.07455 -14.90366 -14.50103 -14.19392 -14.05562 -14.00192 -13.75482 -13.47376 -13.44728 -13.19920 -12.79795 -12.62738 -12.53796 -12.33629 -12.00378 -11.81260 -11.65195 -11.61572 -11.40361 -11.13017 -10.66582 -9.83243 -9.09394 -9.08042 -8.16741 -6.15169 0.35200 0.43075 1.37510 1.40324 1.51390 2.26639 2.43498 2.78289 3.11498 3.23500 3.45445 3.75781 3.97612 4.01584 4.11963 4.17811 4.22694 4.34313 4.39961 4.52950 4.55249 4.58378 4.66221 4.69090 4.87207 4.89187 4.97196 5.12331 5.13685 5.21111 5.27226 5.40927 5.49397 5.51685 5.56097 5.74432 5.77045 6.25300 6.29925 6.48904 6.64892 6.92356 7.45382 9.00717 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.003879 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.366006 B = 7217.179341 C = 7381.112667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 H 0.062 0.938 4 C -0.003 4.003 5 C -0.490 4.490 6 H 0.035 0.965 7 C -0.006 4.006 8 N -0.959 5.959 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.251 1.251 12 H -0.290 1.290 13 N -0.686 5.686 14 C 0.075 3.925 15 C 0.084 3.916 16 H 0.077 0.923 17 C -0.097 4.097 18 C -0.188 4.188 19 C -0.078 4.078 20 C -0.150 4.150 21 C -0.087 4.087 22 C -0.157 4.157 23 C 0.074 3.926 24 O -0.321 6.321 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.013 0.987 29 H 0.021 0.979 30 H 0.260 0.740 31 H 0.338 0.662 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 1.570 -20.811 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 H 0.081 0.919 4 C -0.041 4.041 5 C -0.528 4.528 6 H 0.054 0.946 7 C -0.200 4.200 8 N -0.602 5.602 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.175 1.175 12 H -0.217 1.217 13 N -0.316 5.316 14 C -0.055 4.055 15 C 0.028 3.972 16 H 0.095 0.905 17 C -0.135 4.135 18 C -0.188 4.188 19 C -0.095 4.095 20 C -0.168 4.168 21 C -0.104 4.104 22 C -0.176 4.176 23 C 0.029 3.971 24 O -0.236 6.236 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.352 1.505 -20.371 22.900 hybrid contribution -0.561 -0.347 0.843 1.070 sum -10.913 1.159 -19.528 22.400 Atomic orbital electron populations 1.22429 0.96145 1.02069 1.02329 1.21371 0.92301 0.97009 0.90137 0.91949 1.19579 0.94552 0.95910 0.94058 1.21319 0.92101 1.32387 1.07006 0.94626 1.25965 0.95547 0.97616 1.00885 1.70083 1.08441 1.48102 1.33591 0.85723 0.79181 0.78666 0.79359 1.19311 1.17501 1.21671 1.60384 1.58471 1.09580 1.03192 1.22022 1.00192 0.94955 0.88287 1.23453 0.90374 0.89136 0.94202 0.90493 1.21788 1.04378 0.97829 0.89477 1.21054 1.04924 0.96783 0.96088 1.20685 0.98499 1.00030 0.90326 1.21447 0.99732 0.94519 1.01075 1.21246 0.97216 0.98668 0.93319 1.20594 1.05363 0.98582 0.93072 1.20053 0.97769 0.95686 0.83583 1.86812 1.54343 1.64514 1.17954 0.92615 0.91423 0.92123 0.96863 0.96072 0.93086 0.84350 0.93768 0.89335 0.87986 0.87615 0.83601 0.82502 0.82401 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 9.16 71.98 0.66 -4.47 16 2 C 0.10 3.91 2.53 44.91 0.11 4.02 16 3 H 0.06 2.47 7.80 -2.38 -0.02 2.46 16 4 C 0.00 -0.15 3.72 29.85 0.11 -0.04 16 5 C -0.49 -28.69 9.39 25.60 0.24 -28.45 16 6 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 7 C -0.01 -0.33 5.47 84.66 0.46 0.13 16 8 N -0.96 -62.10 13.96 21.45 0.30 -61.80 16 9 Si 0.95 45.90 27.47 68.60 1.88 47.79 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 N -0.69 -25.96 5.96 -491.55 -2.93 -28.90 16 14 C 0.07 2.30 5.16 86.31 0.45 2.74 16 15 C 0.08 2.48 3.82 31.18 0.12 2.60 16 16 H 0.08 2.56 8.14 -2.38 -0.02 2.55 16 17 C -0.10 -2.23 6.65 30.73 0.20 -2.02 16 18 C -0.19 -4.49 6.27 -19.53 -0.12 -4.61 16 19 C -0.08 -1.43 10.03 22.18 0.22 -1.21 16 20 C -0.15 -2.34 10.07 22.31 0.22 -2.12 16 21 C -0.09 -1.47 10.02 22.21 0.22 -1.25 16 22 C -0.16 -3.62 10.06 22.45 0.23 -3.39 16 23 C 0.07 2.05 7.04 22.68 0.16 2.21 16 24 O -0.32 -10.16 10.64 -95.10 -1.01 -11.17 16 25 H 0.05 1.64 8.13 -2.38 -0.02 1.62 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 28 H 0.01 0.63 7.20 -2.38 -0.02 0.61 16 29 H 0.02 0.96 7.57 -2.39 -0.02 0.95 16 30 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.34 12.43 8.32 -89.69 -0.75 11.68 16 32 H 0.04 1.24 7.44 -2.39 -0.02 1.22 16 33 H 0.09 2.72 8.05 -2.39 -0.02 2.70 16 34 H 0.10 2.04 7.92 -2.39 -0.02 2.03 16 35 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -71.12 321.02 1.75 -69.37 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.23 Total: 20.57 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 3.29 Total: -35.86 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.63 Total: -90.70 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.01 Total: -11.17 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.79 kcal Total: -71.12 1.75 -69.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.807 kcal (2) G-P(sol) polarization free energy of solvation -71.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds