Wall clock time and date at job start Mon Mar 30 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46902 * 2 1 4 4 C 1.53009 * 109.46972 * 240.00521 * 2 1 3 5 5 C 1.50696 * 109.47133 * 174.99737 * 4 2 1 6 6 H 1.08006 * 119.99604 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00121 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99980 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00036 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47038 * 119.99953 * 9 7 5 12 12 H 1.48494 * 109.47312 * 239.99852 * 9 7 5 13 13 N 1.46889 * 109.47256 * 120.00498 * 2 1 3 14 14 C 1.46899 * 110.99945 * 274.99859 * 13 2 1 15 15 C 1.53000 * 109.47332 * 180.02562 * 14 13 2 16 16 H 1.08998 * 110.66125 * 308.20938 * 15 14 13 17 17 C 1.54717 * 110.74716 * 185.00036 * 15 14 13 18 18 C 1.51644 * 101.90076 * 216.31098 * 17 15 14 19 19 C 1.37740 * 132.17315 * 195.69338 * 18 17 15 20 20 C 1.38357 * 119.97703 * 179.64755 * 19 18 17 21 21 C 1.38279 * 119.76155 * 359.97084 * 20 19 18 22 22 C 1.37934 * 120.35672 * 0.19364 * 21 20 19 23 23 C 1.38877 * 107.03294 * 15.69735 * 18 17 15 24 24 O 1.36130 * 111.25578 * 0.60761 * 23 18 17 25 25 H 1.08994 * 109.46756 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46812 * 299.99697 * 1 2 3 27 27 H 1.08998 * 109.46900 * 59.99522 * 1 2 3 28 28 H 1.08998 * 109.46960 * 294.99808 * 4 2 1 29 29 H 1.08998 * 109.47013 * 54.99734 * 4 2 1 30 30 H 0.96998 * 120.00521 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00377 * 151.04737 * 13 2 1 32 32 H 1.09000 * 109.47272 * 59.99765 * 14 13 2 33 33 H 1.09001 * 109.47048 * 300.00025 * 14 13 2 34 34 H 1.08998 * 110.94136 * 334.46538 * 17 15 14 35 35 H 1.09002 * 110.94222 * 98.15821 * 17 15 14 36 36 H 1.08000 * 120.01678 * 359.59595 * 19 18 17 37 37 H 1.08004 * 120.11642 * 179.97438 * 20 19 18 38 38 H 1.08008 * 119.82441 * 180.18247 * 21 20 19 39 39 H 1.08002 * 119.87771 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1933 -2.3580 8 7 3.5765 -1.8384 -3.2992 9 14 6.0921 -1.0621 -2.4364 10 1 6.5839 -0.2927 -1.2653 11 1 6.6855 -2.4233 -2.4183 12 1 6.4871 -0.3665 -3.6875 13 7 2.0197 -0.6925 1.1993 14 6 2.0826 0.2225 2.3468 15 6 2.5964 -0.5330 3.5740 16 1 2.0193 -1.4437 3.7345 17 6 2.5562 0.3697 4.8299 18 6 3.8056 -0.0678 5.5696 19 6 4.2245 0.1189 6.8684 20 6 5.4335 -0.4074 7.2873 21 6 6.2168 -1.1202 6.3982 22 6 5.8009 -1.3054 5.0962 23 6 4.5872 -0.7750 4.6652 24 8 3.9965 -0.8300 3.4400 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.7517 -1.7714 -1.2058 29 1 1.6054 -0.2616 -2.1370 30 1 4.0609 -2.2457 -4.0343 31 1 2.9174 -1.1205 1.0286 32 1 1.0872 0.6162 2.5525 33 1 2.7590 1.0461 2.1181 34 1 2.6149 1.4228 4.5547 35 1 1.6632 0.1727 5.4229 36 1 3.6097 0.6766 7.5594 37 1 5.7643 -0.2620 8.3051 38 1 7.1594 -1.5340 6.7249 39 1 6.4190 -1.8631 4.4081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:38 Heat of formation + Delta-G solvation = -39.172506 kcal Electronic energy + Delta-G solvation = -19171.057350 eV Core-core repulsion = 16270.422553 eV Total energy + Delta-G solvation = -2900.634797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10052 -38.74671 -37.90243 -35.00007 -33.90595 -32.55150 -30.93648 -29.79810 -29.27814 -26.13390 -24.88345 -23.39980 -22.65522 -22.25066 -21.09187 -18.59843 -18.45888 -17.69151 -17.14219 -16.82194 -16.33662 -16.14168 -15.54149 -15.09424 -14.82112 -14.47947 -14.08707 -13.95176 -13.70554 -13.54566 -13.49043 -13.25213 -13.09008 -12.88063 -12.63324 -12.61634 -12.40282 -12.22623 -11.96547 -11.79111 -11.64326 -11.23008 -11.01488 -10.60850 -9.83460 -9.27581 -9.08613 -8.22884 -6.32696 0.35147 0.43059 1.34245 1.35767 1.48047 2.30863 2.37065 2.77991 3.06818 3.23101 3.46004 3.76641 3.98614 4.04842 4.16215 4.21230 4.26971 4.36403 4.52131 4.53842 4.63756 4.65764 4.68527 4.73734 4.87217 4.95541 5.02912 5.14806 5.20542 5.33186 5.40946 5.46413 5.49805 5.52030 5.55610 5.77422 5.81537 6.17926 6.28102 6.35834 6.52891 6.82207 7.35943 8.88889 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.005162 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.653980 B = 5422.587649 C = 6729.129967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.093 3.907 3 H 0.024 0.976 4 C 0.027 3.973 5 C -0.534 4.534 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.067 3.933 15 C 0.082 3.918 16 H 0.093 0.907 17 C -0.094 4.094 18 C -0.186 4.186 19 C -0.074 4.074 20 C -0.150 4.150 21 C -0.087 4.087 22 C -0.165 4.165 23 C 0.072 3.928 24 O -0.332 6.332 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.053 0.947 28 H -0.003 1.003 29 H -0.001 1.001 30 H 0.264 0.736 31 H 0.342 0.658 32 H 0.112 0.888 33 H 0.022 0.978 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 4.879 22.710 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.042 0.958 4 C -0.010 4.010 5 C -0.572 4.572 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.201 1.201 13 N -0.317 5.317 14 C -0.062 4.062 15 C 0.026 3.974 16 H 0.111 0.889 17 C -0.131 4.131 18 C -0.187 4.187 19 C -0.091 4.091 20 C -0.168 4.168 21 C -0.105 4.105 22 C -0.184 4.184 23 C 0.027 3.973 24 O -0.247 6.247 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.040 0.960 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.173 0.827 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.737 4.494 22.480 22.937 hybrid contribution 1.701 0.269 -1.133 2.062 sum 0.964 4.763 21.347 21.893 Atomic orbital electron populations 1.21705 0.93786 1.01612 1.01313 1.21477 0.95556 0.94719 0.89897 0.95752 1.19146 0.94617 0.94806 0.92478 1.21520 0.93492 1.34106 1.08095 0.93195 1.25827 1.03133 0.94798 0.95358 1.70082 1.37365 1.36624 1.12727 0.85519 0.80159 0.78021 0.78073 1.19485 1.20315 1.20093 1.60675 1.33991 1.32318 1.04762 1.22172 1.01179 0.93330 0.89555 1.23574 0.79218 0.98917 0.95680 0.88936 1.21809 0.96954 1.00537 0.93777 1.21091 0.98800 1.02829 0.95973 1.20704 0.96745 0.98437 0.93255 1.21457 0.94470 0.99600 1.01228 1.21217 1.00547 0.97496 0.91194 1.20601 0.95680 1.04152 0.97960 1.20090 0.95676 0.96585 0.84905 1.86896 1.23742 1.86978 1.27077 0.93133 0.91347 0.92766 0.98428 0.98313 0.92735 0.83879 0.87033 0.95960 0.88447 0.86228 0.83000 0.82294 0.82687 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.42 71.98 0.68 -3.68 16 2 C 0.09 3.95 2.59 44.92 0.12 4.06 16 3 H 0.02 1.06 7.80 -2.39 -0.02 1.04 16 4 C 0.03 1.45 4.57 29.85 0.14 1.58 16 5 C -0.53 -30.98 8.12 25.60 0.21 -30.77 16 6 H 0.05 2.87 7.49 -2.91 -0.02 2.84 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.69 -27.26 6.31 -491.56 -3.10 -30.36 16 14 C 0.07 2.08 5.16 86.30 0.45 2.53 16 15 C 0.08 2.35 3.82 31.18 0.12 2.47 16 16 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 17 C -0.09 -1.98 6.65 30.73 0.20 -1.78 16 18 C -0.19 -4.50 6.27 -19.53 -0.12 -4.62 16 19 C -0.07 -1.35 10.03 22.18 0.22 -1.12 16 20 C -0.15 -2.47 10.07 22.31 0.22 -2.24 16 21 C -0.09 -1.68 10.01 22.21 0.22 -1.46 16 22 C -0.17 -4.42 10.06 22.45 0.23 -4.20 16 23 C 0.07 2.21 7.04 22.68 0.16 2.37 16 24 O -0.33 -11.89 10.64 -95.04 -1.01 -12.90 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.92 7.45 -2.39 -0.02 1.90 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.34 15.86 7.05 -89.70 -0.63 15.23 16 32 H 0.11 2.80 7.44 -2.39 -0.02 2.78 16 33 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 34 H 0.10 1.91 7.92 -2.39 -0.02 1.89 16 35 H 0.12 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -69.47 322.97 1.89 -67.58 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.39 Total: 20.62 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 3.30 Total: -35.97 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.82 Total: -87.39 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.01 Total: -12.90 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -69.47 1.89 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.408 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds