Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99467 * 2 1 4 4 C 1.50702 * 109.46906 * 125.00274 * 3 2 1 5 5 C 1.38132 * 119.99453 * 265.25583 * 4 3 2 6 6 C 1.38843 * 119.98160 * 180.25179 * 5 4 3 7 7 N 1.39937 * 120.01799 * 179.72535 * 6 5 4 8 8 C 1.38880 * 119.96093 * 359.74659 * 6 5 4 9 9 C 1.38092 * 119.98268 * 0.02562 * 8 6 5 10 10 C 1.38683 * 119.98781 * 85.00364 * 4 3 2 11 11 O 1.36003 * 119.98008 * 0.02562 * 10 4 3 12 12 C 1.42898 * 116.99819 * 185.13075 * 11 10 4 13 13 H 1.08999 * 109.47074 * 35.23427 * 12 11 10 14 14 C 1.52999 * 109.47335 * 275.23219 * 12 11 10 15 15 C 1.52998 * 109.47190 * 155.23180 * 12 11 10 16 16 C 1.50701 * 109.47204 * 295.00355 * 15 12 11 17 17 H 1.08008 * 119.99791 * 359.97438 * 16 15 12 18 18 C 1.37874 * 120.00467 * 179.72287 * 16 15 12 19 19 N 1.31521 * 119.99855 * 0.27152 * 18 16 15 20 20 Si 1.86794 * 120.00465 * 180.27518 * 18 16 15 21 21 H 1.48504 * 109.47284 * 89.99853 * 20 18 16 22 22 H 1.48507 * 109.47373 * 209.99888 * 20 18 16 23 23 H 1.48506 * 109.47217 * 329.99849 * 20 18 16 24 24 H 1.08002 * 119.99593 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00755 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00755 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47295 * 5.00859 * 3 2 1 28 28 H 1.09003 * 109.47673 * 245.00358 * 3 2 1 29 29 H 1.08002 * 120.00669 * 0.02741 * 5 4 3 30 30 H 0.97000 * 119.99785 * 180.02562 * 7 6 5 31 31 H 0.97000 * 119.99819 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.01181 * 179.97438 * 8 6 5 33 33 H 1.07996 * 119.99121 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47210 * 300.00125 * 14 12 11 35 35 H 1.09002 * 109.47218 * 60.00255 * 14 12 11 36 36 H 1.09007 * 109.47182 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.47581 * 174.99980 * 15 12 11 38 38 H 1.09007 * 109.47050 * 54.99949 * 15 12 11 39 39 H 0.96991 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0204 1.3327 1.1639 5 6 2.6433 1.9238 2.3540 6 6 3.5271 1.9537 3.4244 7 7 3.1480 2.5574 4.6286 8 6 4.7877 1.3845 3.2992 9 6 5.1613 0.7898 2.1102 10 6 4.2774 0.7600 1.0413 11 8 4.6462 0.1741 -0.1293 12 6 5.9090 -0.4942 -0.1507 13 1 6.0891 -0.9618 0.8173 14 6 7.0177 0.5193 -0.4416 15 6 5.8999 -1.5671 -1.2415 16 6 4.8916 -2.6309 -0.8913 17 1 4.3153 -2.5501 0.0186 18 6 4.7011 -3.7047 -1.7349 19 7 5.4032 -3.8033 -2.8427 20 14 3.4458 -5.0194 -1.3046 21 1 2.1269 -4.6516 -1.8795 22 1 3.8833 -6.3236 -1.8641 23 1 3.3293 -5.1283 0.1718 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5401 0.9352 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3584 2.1317 0.0897 28 1 2.6212 1.4028 -0.9314 29 1 1.6626 2.3658 2.4507 30 1 3.7659 2.5784 5.3761 31 1 2.2675 2.9548 4.7158 32 1 5.4760 1.4076 4.1311 33 1 6.1417 0.3475 2.0125 34 1 6.8376 0.9869 -1.4096 35 1 7.0243 1.2836 0.3355 36 1 7.9810 0.0095 -0.4575 37 1 6.8901 -2.0161 -1.3179 38 1 5.6323 -1.1129 -2.1956 39 1 5.2689 -4.5585 -3.4363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695906624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = -10.088663 kcal Electronic energy + Delta-G solvation = -19607.838403 eV Core-core repulsion = 16708.464776 eV Total energy + Delta-G solvation = -2899.373627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86022 -37.56023 -35.26695 -33.63843 -32.89324 -31.46937 -30.70865 -27.76532 -27.35432 -25.91793 -23.36227 -22.47680 -21.12383 -19.84578 -19.33581 -17.43740 -16.75517 -16.31903 -16.21993 -14.91689 -14.72506 -14.51654 -14.23712 -14.01143 -13.46514 -13.29918 -12.66162 -12.58769 -12.43403 -11.97737 -11.84617 -11.66440 -11.49793 -11.37374 -11.24191 -10.82961 -10.72038 -10.50937 -10.44080 -9.99466 -9.49422 -9.24135 -8.96229 -8.94842 -8.48106 -8.34687 -6.79533 -5.97987 -3.98517 1.62886 2.03946 2.71870 3.34859 3.40913 3.44611 3.98878 4.11679 4.22349 4.49029 5.11317 5.16619 5.39054 5.40326 5.50418 5.57125 5.64670 5.75394 5.83979 5.88272 5.91906 6.06701 6.14033 6.27664 6.30860 6.36127 6.50831 6.60829 6.68745 6.75676 6.88132 7.02254 7.13884 7.20001 7.53734 7.62749 7.70378 7.89260 7.99235 8.31630 8.44317 9.05292 9.64396 11.13604 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.006521 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.500472 B = 4292.650078 C = 5112.233209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.121 4.121 3 C -0.044 4.044 4 C -0.074 4.074 5 C -0.154 4.154 6 C 0.164 3.836 7 N -0.888 5.888 8 C -0.160 4.160 9 C -0.167 4.167 10 C 0.103 3.897 11 O -0.290 6.290 12 C 0.088 3.912 13 H 0.059 0.941 14 C -0.177 4.177 15 C 0.026 3.974 16 C -0.508 4.508 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 12.329 11.024 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.139 4.139 3 C -0.081 4.081 4 C -0.075 4.075 5 C -0.176 4.176 6 C 0.062 3.938 7 N -0.430 5.430 8 C -0.183 4.183 9 C -0.186 4.186 10 C 0.055 3.945 11 O -0.203 6.203 12 C 0.032 3.968 13 H 0.077 0.923 14 C -0.235 4.235 15 C -0.011 4.011 16 C -0.547 4.547 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.220 0.780 31 H 0.220 0.780 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.861 12.160 10.598 16.586 hybrid contribution -0.537 -0.735 0.706 1.152 sum -4.399 11.426 11.304 16.664 Atomic orbital electron populations 1.23676 0.95817 1.01083 1.04878 1.23022 0.95593 0.99004 0.96311 1.19562 0.96235 0.95299 0.97008 1.18814 0.92602 1.00627 0.95441 1.20170 0.99255 1.06147 0.92060 1.17550 0.93554 0.95776 0.86893 1.42288 1.19697 1.68025 1.13017 1.20296 0.95512 1.04248 0.98232 1.21114 1.00478 1.03582 0.93408 1.18781 0.93064 0.95838 0.86839 1.86258 1.38580 1.66296 1.29213 1.22766 0.79919 0.92295 1.01793 0.92301 1.22415 0.99400 0.99706 1.01948 1.19246 0.97946 0.91074 0.92801 1.21113 1.21098 1.05662 1.06807 0.92620 1.24957 0.96148 0.98129 0.95051 1.69949 1.40892 1.30907 1.11957 0.86642 0.81879 0.81198 0.78634 1.20584 1.21292 1.19912 0.88881 0.89251 0.86380 0.91505 0.89226 0.86346 0.78045 0.78046 0.86724 0.85293 0.92043 0.93363 0.91679 0.94628 0.95372 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.17 14.32 29.01 0.42 -2.75 16 2 C -0.12 -2.05 9.50 -36.03 -0.34 -2.40 16 3 C -0.04 -0.70 5.51 -29.03 -0.16 -0.86 16 4 C -0.07 -1.23 5.13 -104.50 -0.54 -1.76 16 5 C -0.15 -2.21 9.53 -39.40 -0.38 -2.59 16 6 C 0.16 2.22 6.76 -83.70 -0.57 1.65 16 7 N -0.89 -8.63 9.10 32.44 0.30 -8.34 16 8 C -0.16 -2.30 9.89 -39.40 -0.39 -2.69 16 9 C -0.17 -2.76 8.23 -39.45 -0.32 -3.09 16 10 C 0.10 1.90 6.57 -39.24 -0.26 1.64 16 11 O -0.29 -6.14 8.68 -19.75 -0.17 -6.31 16 12 C 0.09 1.84 2.17 -26.73 -0.06 1.78 16 13 H 0.06 1.21 6.32 -51.93 -0.33 0.88 16 14 C -0.18 -3.06 9.17 37.16 0.34 -2.72 16 15 C 0.03 0.67 4.68 -27.88 -0.13 0.54 16 16 C -0.51 -14.32 8.88 -34.44 -0.31 -14.63 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 20 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.09 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.09 1.11 7.84 -52.49 -0.41 0.70 16 26 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 28 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.39 3.08 8.84 -40.82 -0.36 2.72 16 31 H 0.39 3.09 8.84 -40.82 -0.36 2.73 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 2.06 5.41 -52.49 -0.28 1.77 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.74 6.89 -51.93 -0.36 0.39 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -30.79 328.10 -7.83 -38.62 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.83 Total: 6.55 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -2.79 Total: -26.32 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 1.03 Total: -34.44 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.17 Total: -6.31 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.79 -7.83 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.529 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds