Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99467 * 2 1 4 4 C 1.50702 * 109.46906 * 125.00274 * 3 2 1 5 5 C 1.38132 * 119.99453 * 265.25583 * 4 3 2 6 6 C 1.38843 * 119.98160 * 180.25179 * 5 4 3 7 7 N 1.39937 * 120.01799 * 179.72535 * 6 5 4 8 8 C 1.38880 * 119.96093 * 359.74659 * 6 5 4 9 9 C 1.38092 * 119.98268 * 0.02562 * 8 6 5 10 10 C 1.38683 * 119.98781 * 85.00364 * 4 3 2 11 11 O 1.36003 * 119.98008 * 0.02562 * 10 4 3 12 12 C 1.42898 * 116.99819 * 185.13075 * 11 10 4 13 13 H 1.08999 * 109.47074 * 35.23427 * 12 11 10 14 14 C 1.52999 * 109.47335 * 275.23219 * 12 11 10 15 15 C 1.52998 * 109.47190 * 155.23180 * 12 11 10 16 16 C 1.50701 * 109.47204 * 295.00355 * 15 12 11 17 17 H 1.08008 * 119.99791 * 359.97438 * 16 15 12 18 18 C 1.37874 * 120.00467 * 179.72287 * 16 15 12 19 19 N 1.31521 * 119.99855 * 0.27152 * 18 16 15 20 20 Si 1.86794 * 120.00465 * 180.27518 * 18 16 15 21 21 H 1.48504 * 109.47284 * 89.99853 * 20 18 16 22 22 H 1.48507 * 109.47373 * 209.99888 * 20 18 16 23 23 H 1.48506 * 109.47217 * 329.99849 * 20 18 16 24 24 H 1.08002 * 119.99593 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00755 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00755 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47295 * 5.00859 * 3 2 1 28 28 H 1.09003 * 109.47673 * 245.00358 * 3 2 1 29 29 H 1.08002 * 120.00669 * 0.02741 * 5 4 3 30 30 H 0.97000 * 119.99785 * 180.02562 * 7 6 5 31 31 H 0.97000 * 119.99819 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.01181 * 179.97438 * 8 6 5 33 33 H 1.07996 * 119.99121 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47210 * 300.00125 * 14 12 11 35 35 H 1.09002 * 109.47218 * 60.00255 * 14 12 11 36 36 H 1.09007 * 109.47182 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.47581 * 174.99980 * 15 12 11 38 38 H 1.09007 * 109.47050 * 54.99949 * 15 12 11 39 39 H 0.96991 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0204 1.3327 1.1639 5 6 2.6433 1.9238 2.3540 6 6 3.5271 1.9537 3.4244 7 7 3.1480 2.5574 4.6286 8 6 4.7877 1.3845 3.2992 9 6 5.1613 0.7898 2.1102 10 6 4.2774 0.7600 1.0413 11 8 4.6462 0.1741 -0.1293 12 6 5.9090 -0.4942 -0.1507 13 1 6.0891 -0.9618 0.8173 14 6 7.0177 0.5193 -0.4416 15 6 5.8999 -1.5671 -1.2415 16 6 4.8916 -2.6309 -0.8913 17 1 4.3153 -2.5501 0.0186 18 6 4.7011 -3.7047 -1.7349 19 7 5.4032 -3.8033 -2.8427 20 14 3.4458 -5.0194 -1.3046 21 1 2.1269 -4.6516 -1.8795 22 1 3.8833 -6.3236 -1.8641 23 1 3.3293 -5.1283 0.1718 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5401 0.9352 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3584 2.1317 0.0897 28 1 2.6212 1.4028 -0.9314 29 1 1.6626 2.3658 2.4507 30 1 3.7659 2.5784 5.3761 31 1 2.2675 2.9548 4.7158 32 1 5.4760 1.4076 4.1311 33 1 6.1417 0.3475 2.0125 34 1 6.8376 0.9869 -1.4096 35 1 7.0243 1.2836 0.3355 36 1 7.9810 0.0095 -0.4575 37 1 6.8901 -2.0161 -1.3179 38 1 5.6323 -1.1129 -2.1956 39 1 5.2689 -4.5585 -3.4363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695906624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = -28.357337 kcal Electronic energy + Delta-G solvation = -19608.630592 eV Core-core repulsion = 16708.464776 eV Total energy + Delta-G solvation = -2900.165816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15183 -38.90644 -36.46626 -35.42745 -34.28474 -33.15249 -31.96814 -29.35943 -28.80810 -27.12606 -25.25110 -23.90446 -22.30905 -21.40966 -20.57871 -18.84751 -18.48640 -17.80581 -17.34775 -16.59688 -16.06667 -16.01965 -15.61826 -15.30060 -14.83992 -14.68520 -14.15611 -13.91210 -13.75860 -13.61365 -13.33783 -13.29007 -13.05084 -12.83094 -12.70486 -12.65244 -12.35726 -12.06659 -11.91041 -11.60338 -11.22641 -11.14845 -10.57764 -10.42335 -10.18582 -9.64830 -8.20100 -7.92758 -6.27691 0.45975 0.83026 1.35926 1.37388 1.47816 1.47937 2.39635 2.65674 2.99940 3.14572 3.16589 3.96228 4.00379 4.12140 4.20026 4.29851 4.34799 4.40592 4.48440 4.56305 4.70056 4.76311 4.87878 4.97404 5.06320 5.12623 5.15636 5.21109 5.35557 5.38916 5.48453 5.56858 5.65400 5.77334 5.79701 5.94777 5.97925 6.22121 6.69226 6.82725 6.93982 7.17347 7.39083 8.91958 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.006521 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.500472 B = 4292.650078 C = 5112.233209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C -0.038 4.038 4 C -0.083 4.083 5 C -0.158 4.158 6 C 0.176 3.824 7 N -0.871 5.871 8 C -0.167 4.167 9 C -0.173 4.173 10 C 0.059 3.941 11 O -0.317 6.317 12 C 0.097 3.903 13 H 0.058 0.942 14 C -0.166 4.166 15 C 0.030 3.970 16 C -0.522 4.522 17 H 0.048 0.952 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.277 1.277 23 H -0.268 1.268 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.145 0.855 30 H 0.405 0.595 31 H 0.405 0.595 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.022 0.978 38 H -0.003 1.003 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 13.634 13.468 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.075 4.075 4 C -0.084 4.084 5 C -0.180 4.180 6 C 0.072 3.928 7 N -0.413 5.413 8 C -0.190 4.190 9 C -0.192 4.192 10 C 0.012 3.988 11 O -0.232 6.232 12 C 0.041 3.959 13 H 0.076 0.924 14 C -0.223 4.223 15 C -0.007 4.007 16 C -0.560 4.560 17 H 0.066 0.934 18 C -0.192 4.192 19 N -0.572 5.572 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.192 1.192 24 H 0.116 0.884 25 H 0.139 0.861 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.234 0.766 31 H 0.234 0.766 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.015 0.985 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.514 13.493 13.091 19.592 hybrid contribution -0.115 -1.069 0.051 1.077 sum -5.629 12.424 13.142 18.941 Atomic orbital electron populations 1.23923 0.94764 1.02775 1.01053 1.22833 0.96527 0.97920 0.99967 1.19508 0.96412 0.95716 0.95834 1.19063 0.92068 1.00651 0.96635 1.20421 1.00542 1.05774 0.91286 1.17669 0.92938 0.94423 0.87805 1.42256 1.20604 1.66547 1.11934 1.20563 0.96513 1.03805 0.98081 1.21208 1.00247 1.03923 0.93862 1.19111 0.94753 0.98208 0.86709 1.86170 1.38530 1.67216 1.31254 1.22435 0.81534 0.92319 0.99655 0.92400 1.22295 0.98442 0.99291 1.02275 1.19088 0.96402 0.92038 0.93141 1.21394 1.21467 1.06547 1.06576 0.93389 1.25792 0.98091 1.00407 0.94916 1.70061 1.42396 1.31794 1.12908 0.85623 0.79324 0.78559 0.78665 1.20109 1.20232 1.19219 0.88433 0.86095 0.90663 0.88342 0.91718 0.83700 0.76595 0.76558 0.84145 0.85404 0.92664 0.91211 0.90425 0.96031 0.98464 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.13 14.32 67.78 0.97 -4.16 16 2 C -0.15 -5.28 9.50 25.64 0.24 -5.04 16 3 C -0.04 -1.20 5.51 29.10 0.16 -1.04 16 4 C -0.08 -2.74 5.13 -19.78 -0.10 -2.84 16 5 C -0.16 -4.15 9.53 22.39 0.21 -3.93 16 6 C 0.18 4.22 6.76 38.15 0.26 4.48 16 7 N -0.87 -13.33 9.10 -51.26 -0.47 -13.80 16 8 C -0.17 -4.42 9.89 22.39 0.22 -4.20 16 9 C -0.17 -5.69 8.23 22.35 0.18 -5.50 16 10 C 0.06 2.22 6.57 22.49 0.15 2.37 16 11 O -0.32 -14.17 8.68 -93.59 -0.81 -14.98 16 12 C 0.10 4.22 2.17 30.59 0.07 4.29 16 13 H 0.06 2.49 6.32 -2.39 -0.02 2.47 16 14 C -0.17 -5.82 9.17 71.98 0.66 -5.16 16 15 C 0.03 1.64 4.68 29.85 0.14 1.78 16 16 C -0.52 -30.74 8.88 25.60 0.23 -30.51 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 20 Si 0.95 46.07 29.54 68.60 2.03 48.10 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 H 0.10 2.54 8.06 -2.91 -0.02 2.52 16 25 H 0.12 2.54 7.84 -2.91 -0.02 2.52 16 26 H 0.08 3.19 8.06 -2.91 -0.02 3.17 16 27 H 0.10 2.39 7.70 -2.38 -0.02 2.37 16 28 H 0.06 2.32 7.68 -2.39 -0.02 2.30 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.40 4.63 8.84 -92.71 -0.82 3.81 16 31 H 0.41 4.57 8.84 -92.71 -0.82 3.75 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.13 4.08 5.41 -2.91 -0.02 4.07 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.13 6.89 -2.39 -0.02 2.12 16 36 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 39 H 0.26 15.28 8.31 -92.72 -0.77 14.51 16 Total: -1.00 -69.48 328.10 4.29 -65.18 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.59 Total: 21.32 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 3.85 Total: -48.68 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -0.18 Total: -70.94 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.81 Total: -14.98 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -69.48 4.29 -65.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.824 kcal (2) G-P(sol) polarization free energy of solvation -69.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds