Wall clock time and date at job start Mon Mar 30 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00192 * 2 1 4 4 C 1.50696 * 109.47249 * 124.99705 * 3 2 1 5 5 C 1.38141 * 119.99102 * 265.02340 * 4 3 2 6 6 C 1.38842 * 119.97844 * 179.72811 * 5 4 3 7 7 N 1.39935 * 120.01848 * 180.27720 * 6 5 4 8 8 C 1.38878 * 119.96270 * 0.52408 * 6 5 4 9 9 C 1.38089 * 119.98063 * 359.47121 * 8 6 5 10 10 C 1.38675 * 119.99431 * 85.00333 * 4 3 2 11 11 O 1.36009 * 119.97746 * 0.02562 * 10 4 3 12 12 C 1.42898 * 116.99991 * 174.57009 * 11 10 4 13 13 H 1.09000 * 109.47177 * 324.78131 * 12 11 10 14 14 C 1.52996 * 109.47123 * 84.78190 * 12 11 10 15 15 C 1.53000 * 109.46919 * 204.78351 * 12 11 10 16 16 C 1.50696 * 109.47618 * 65.00175 * 15 12 11 17 17 H 1.08003 * 119.99742 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99935 * 180.02562 * 16 15 12 19 19 N 1.31522 * 119.99573 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00289 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47014 * 90.00139 * 20 18 16 22 22 H 1.48497 * 109.47295 * 210.00278 * 20 18 16 23 23 H 1.48497 * 109.47085 * 330.00313 * 20 18 16 24 24 H 1.07994 * 120.00456 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99785 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99785 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46886 * 4.99962 * 3 2 1 28 28 H 1.09000 * 109.46907 * 245.00046 * 3 2 1 29 29 H 1.07997 * 120.01036 * 359.95582 * 5 4 3 30 30 H 0.96997 * 120.00412 * 180.25150 * 7 6 5 31 31 H 0.97002 * 119.99819 * 0.24332 * 7 6 5 32 32 H 1.07997 * 120.01279 * 179.75511 * 8 6 5 33 33 H 1.08002 * 119.99579 * 180.22871 * 9 8 6 34 34 H 1.09003 * 109.47398 * 180.02562 * 14 12 11 35 35 H 1.09004 * 109.46963 * 300.00065 * 14 12 11 36 36 H 1.09000 * 109.47142 * 59.99920 * 14 12 11 37 37 H 1.09005 * 109.46805 * 185.00542 * 15 12 11 38 38 H 1.09000 * 109.46989 * 304.99477 * 15 12 11 39 39 H 0.97007 * 119.99554 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0204 1.3327 1.1639 5 6 2.6450 1.9282 2.3524 6 6 3.5247 1.9485 3.4264 7 7 3.1432 2.5464 4.6327 8 6 4.7854 1.3796 3.3012 9 6 5.1590 0.7846 2.1124 10 6 4.2774 0.7598 1.0416 11 8 4.6463 0.1738 -0.1290 12 6 5.9944 -0.2899 -0.2258 13 1 6.6516 0.3873 0.3198 14 6 6.0955 -1.6932 0.3754 15 6 6.4143 -0.3336 -1.6964 16 6 6.4330 1.0658 -2.2553 17 1 6.1712 1.9026 -1.6248 18 6 6.7834 1.2776 -3.5719 19 7 6.7992 2.4988 -4.0598 20 14 7.2357 -0.1699 -4.6626 21 1 6.0142 -0.6872 -5.3301 22 1 8.2125 0.2710 -5.6905 23 1 7.8397 -1.2441 -3.8342 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 1.6662 2.3746 2.4474 30 1 3.7593 2.5637 5.3817 31 1 2.2626 2.9437 4.7198 32 1 5.4718 1.3984 4.1348 33 1 6.1380 0.3388 2.0159 34 1 7.1239 -2.0468 0.3020 35 1 5.7963 -1.6620 1.4231 36 1 5.4383 -2.3704 -0.1702 37 1 7.4097 -0.7705 -1.7772 38 1 5.7047 -0.9402 -2.2590 39 1 7.0454 2.6478 -4.9862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695906628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:33 Heat of formation + Delta-G solvation = -5.850717 kcal Electronic energy + Delta-G solvation = -19509.294453 eV Core-core repulsion = 16610.104598 eV Total energy + Delta-G solvation = -2899.189856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88228 -37.61038 -35.32633 -33.67902 -32.87469 -31.62147 -30.79694 -27.99139 -27.68402 -25.94822 -23.27535 -22.29792 -21.13662 -19.83384 -19.46022 -17.47762 -16.76555 -16.68520 -16.27661 -14.98889 -14.67730 -14.53640 -14.33325 -13.99992 -13.37715 -13.27606 -12.76972 -12.68340 -12.54424 -12.21085 -11.98561 -11.76333 -11.70051 -11.64966 -11.24777 -10.97259 -10.74266 -10.54607 -10.15258 -9.80077 -9.69731 -9.27991 -9.11626 -9.04851 -8.50876 -8.47549 -6.80116 -5.99848 -3.97196 1.63834 2.04196 2.57452 3.33060 3.40084 3.41551 3.97689 4.10156 4.19450 4.47481 5.10044 5.16979 5.28795 5.34386 5.46381 5.53443 5.55291 5.65260 5.72033 5.83692 5.86744 6.01129 6.11450 6.20975 6.23774 6.35788 6.45334 6.51154 6.59277 6.67163 6.80854 6.87609 7.01148 7.08647 7.16567 7.24721 7.66224 7.77382 7.90450 8.28119 8.57147 9.06265 9.61161 11.13720 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.005760 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.759617 B = 4859.994448 C = 5347.765713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.069 4.069 5 C -0.154 4.154 6 C 0.165 3.835 7 N -0.888 5.888 8 C -0.161 4.161 9 C -0.166 4.166 10 C 0.102 3.898 11 O -0.290 6.290 12 C 0.097 3.903 13 H 0.065 0.935 14 C -0.180 4.180 15 C -0.011 4.011 16 C -0.511 4.511 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.267 1.267 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.392 0.608 31 H 0.393 0.607 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.023 0.977 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 -4.073 14.767 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.138 4.138 3 C -0.088 4.088 4 C -0.071 4.071 5 C -0.177 4.177 6 C 0.064 3.936 7 N -0.430 5.430 8 C -0.183 4.183 9 C -0.185 4.185 10 C 0.055 3.945 11 O -0.203 6.203 12 C 0.041 3.959 13 H 0.083 0.917 14 C -0.237 4.237 15 C -0.048 4.048 16 C -0.549 4.549 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.542 5.542 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.220 0.780 31 H 0.220 0.780 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.990 -4.047 14.340 16.907 hybrid contribution 0.419 -0.503 -0.169 0.676 sum -7.571 -4.550 14.171 16.699 Atomic orbital electron populations 1.23698 0.95796 1.01249 1.04520 1.22907 0.95498 0.98623 0.96790 1.19627 0.96440 0.95068 0.97633 1.18791 0.93105 0.99866 0.95311 1.20182 0.99483 1.05960 0.92028 1.17551 0.93556 0.95646 0.86860 1.42290 1.19755 1.68221 1.12724 1.20286 0.95449 1.04268 0.98326 1.21091 1.00162 1.04043 0.93193 1.18732 0.93429 0.96015 0.86356 1.86237 1.30767 1.71789 1.31485 1.22473 0.80873 0.92621 0.99965 0.91702 1.22446 1.02173 0.98526 1.00573 1.19722 0.96197 0.99031 0.89820 1.21015 1.45566 0.91674 0.96649 0.90836 1.24992 0.95123 0.95437 0.97851 1.69920 1.49164 1.20051 1.15019 0.86825 0.78653 0.83400 0.80662 1.20242 1.21431 1.19134 0.88964 0.88949 0.87353 0.91235 0.88386 0.86294 0.78034 0.78023 0.86690 0.85341 0.91653 0.92962 0.92074 0.94777 0.95885 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.72 14.32 29.01 0.42 -2.30 16 2 C -0.12 -1.78 9.50 -36.03 -0.34 -2.12 16 3 C -0.05 -0.82 5.51 -29.04 -0.16 -0.98 16 4 C -0.07 -1.17 5.13 -104.50 -0.54 -1.71 16 5 C -0.15 -2.25 9.52 -39.39 -0.38 -2.62 16 6 C 0.17 2.26 6.76 -83.70 -0.57 1.70 16 7 N -0.89 -8.76 9.10 32.44 0.30 -8.46 16 8 C -0.16 -2.32 9.89 -39.40 -0.39 -2.71 16 9 C -0.17 -2.75 8.23 -39.46 -0.32 -3.07 16 10 C 0.10 1.90 6.57 -39.24 -0.26 1.64 16 11 O -0.29 -6.06 8.68 -19.77 -0.17 -6.23 16 12 C 0.10 1.95 2.17 -26.73 -0.06 1.89 16 13 H 0.07 1.31 6.32 -51.93 -0.33 0.98 16 14 C -0.18 -2.90 9.17 37.16 0.34 -2.56 16 15 C -0.01 -0.25 3.75 -27.88 -0.10 -0.36 16 16 C -0.51 -14.63 9.43 -34.44 -0.32 -14.95 16 17 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 20 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 25 H 0.09 1.06 7.84 -52.49 -0.41 0.65 16 26 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.07 0.98 7.70 -51.93 -0.40 0.58 16 28 H 0.10 1.84 7.68 -51.93 -0.40 1.45 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.39 3.13 8.84 -40.82 -0.36 2.77 16 31 H 0.39 3.15 8.84 -40.82 -0.36 2.79 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.13 2.02 5.41 -52.49 -0.28 1.74 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.76 6.89 -51.93 -0.36 0.41 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 38 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -31.76 324.50 -7.45 -39.21 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.79 Total: 7.12 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -2.78 Total: -26.30 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 1.07 Total: -35.74 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.17 Total: -6.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.76 -7.45 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.363 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds