Wall clock time and date at job start Mon Mar 30 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00192 * 2 1 4 4 C 1.50696 * 109.47249 * 124.99705 * 3 2 1 5 5 C 1.38141 * 119.99102 * 265.02340 * 4 3 2 6 6 C 1.38842 * 119.97844 * 179.72811 * 5 4 3 7 7 N 1.39935 * 120.01848 * 180.27720 * 6 5 4 8 8 C 1.38878 * 119.96270 * 0.52408 * 6 5 4 9 9 C 1.38089 * 119.98063 * 359.47121 * 8 6 5 10 10 C 1.38675 * 119.99431 * 85.00333 * 4 3 2 11 11 O 1.36009 * 119.97746 * 0.02562 * 10 4 3 12 12 C 1.42898 * 116.99991 * 174.57009 * 11 10 4 13 13 H 1.09000 * 109.47177 * 324.78131 * 12 11 10 14 14 C 1.52996 * 109.47123 * 84.78190 * 12 11 10 15 15 C 1.53000 * 109.46919 * 204.78351 * 12 11 10 16 16 C 1.50696 * 109.47618 * 65.00175 * 15 12 11 17 17 H 1.08003 * 119.99742 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99935 * 180.02562 * 16 15 12 19 19 N 1.31522 * 119.99573 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00289 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47014 * 90.00139 * 20 18 16 22 22 H 1.48497 * 109.47295 * 210.00278 * 20 18 16 23 23 H 1.48497 * 109.47085 * 330.00313 * 20 18 16 24 24 H 1.07994 * 120.00456 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99785 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99785 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46886 * 4.99962 * 3 2 1 28 28 H 1.09000 * 109.46907 * 245.00046 * 3 2 1 29 29 H 1.07997 * 120.01036 * 359.95582 * 5 4 3 30 30 H 0.96997 * 120.00412 * 180.25150 * 7 6 5 31 31 H 0.97002 * 119.99819 * 0.24332 * 7 6 5 32 32 H 1.07997 * 120.01279 * 179.75511 * 8 6 5 33 33 H 1.08002 * 119.99579 * 180.22871 * 9 8 6 34 34 H 1.09003 * 109.47398 * 180.02562 * 14 12 11 35 35 H 1.09004 * 109.46963 * 300.00065 * 14 12 11 36 36 H 1.09000 * 109.47142 * 59.99920 * 14 12 11 37 37 H 1.09005 * 109.46805 * 185.00542 * 15 12 11 38 38 H 1.09000 * 109.46989 * 304.99477 * 15 12 11 39 39 H 0.97007 * 119.99554 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0204 1.3327 1.1639 5 6 2.6450 1.9282 2.3524 6 6 3.5247 1.9485 3.4264 7 7 3.1432 2.5464 4.6327 8 6 4.7854 1.3796 3.3012 9 6 5.1590 0.7846 2.1124 10 6 4.2774 0.7598 1.0416 11 8 4.6463 0.1738 -0.1290 12 6 5.9944 -0.2899 -0.2258 13 1 6.6516 0.3873 0.3198 14 6 6.0955 -1.6932 0.3754 15 6 6.4143 -0.3336 -1.6964 16 6 6.4330 1.0658 -2.2553 17 1 6.1712 1.9026 -1.6248 18 6 6.7834 1.2776 -3.5719 19 7 6.7992 2.4988 -4.0598 20 14 7.2357 -0.1699 -4.6626 21 1 6.0142 -0.6872 -5.3301 22 1 8.2125 0.2710 -5.6905 23 1 7.8397 -1.2441 -3.8342 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 1.6662 2.3746 2.4474 30 1 3.7593 2.5637 5.3817 31 1 2.2626 2.9437 4.7198 32 1 5.4718 1.3984 4.1348 33 1 6.1380 0.3388 2.0159 34 1 7.1239 -2.0468 0.3020 35 1 5.7963 -1.6620 1.4231 36 1 5.4383 -2.3704 -0.1702 37 1 7.4097 -0.7705 -1.7772 38 1 5.7047 -0.9402 -2.2590 39 1 7.0454 2.6478 -4.9862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695906628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:33 Heat of formation + Delta-G solvation = -25.887031 kcal Electronic energy + Delta-G solvation = -19510.163293 eV Core-core repulsion = 16610.104598 eV Total energy + Delta-G solvation = -2900.058695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17167 -38.93672 -36.48634 -35.37405 -34.31014 -33.33262 -32.01591 -29.77347 -28.85374 -27.15000 -24.96889 -23.81385 -22.31981 -21.38141 -20.59881 -18.98970 -18.75191 -17.84735 -17.38073 -16.45188 -16.20791 -15.81031 -15.69281 -15.37856 -14.86518 -14.60656 -14.39748 -14.09403 -13.82443 -13.71829 -13.45514 -13.34871 -13.08959 -12.88569 -12.62367 -12.53420 -12.08358 -12.01322 -11.77480 -11.61164 -11.35876 -11.25058 -10.74921 -10.45869 -10.17865 -9.66470 -8.26059 -7.94673 -6.29333 0.44556 0.81539 1.36817 1.38744 1.48294 1.49822 2.37550 2.63570 2.97714 3.10492 3.14662 3.93061 3.98337 4.07385 4.17909 4.23991 4.32322 4.38311 4.46687 4.54017 4.69053 4.74731 4.87180 4.96889 4.98771 5.09617 5.12569 5.15867 5.23269 5.31400 5.42312 5.49932 5.62047 5.65403 5.76910 5.92856 5.95859 6.28747 6.66847 6.75255 6.91489 7.15798 7.32775 8.91387 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.005760 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.759617 B = 4859.994448 C = 5347.765713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.149 4.149 3 C -0.046 4.046 4 C -0.083 4.083 5 C -0.161 4.161 6 C 0.176 3.824 7 N -0.870 5.870 8 C -0.168 4.168 9 C -0.172 4.172 10 C 0.059 3.941 11 O -0.318 6.318 12 C 0.097 3.903 13 H 0.055 0.945 14 C -0.167 4.167 15 C -0.009 4.009 16 C -0.517 4.517 17 H 0.023 0.977 18 C 0.002 3.998 19 N -0.954 5.954 20 Si 0.951 3.049 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.239 1.239 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.143 0.857 30 H 0.405 0.595 31 H 0.405 0.595 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.022 0.978 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 -5.599 16.528 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.167 4.167 3 C -0.083 4.083 4 C -0.084 4.084 5 C -0.183 4.183 6 C 0.072 3.928 7 N -0.413 5.413 8 C -0.190 4.190 9 C -0.191 4.191 10 C 0.013 3.987 11 O -0.232 6.232 12 C 0.041 3.959 13 H 0.073 0.927 14 C -0.224 4.224 15 C -0.046 4.046 16 C -0.555 4.555 17 H 0.042 0.958 18 C -0.194 4.194 19 N -0.595 5.595 20 Si 0.774 3.226 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.162 1.162 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.161 0.839 30 H 0.235 0.765 31 H 0.234 0.766 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.782 -5.567 16.167 19.222 hybrid contribution 0.539 0.134 -0.571 0.796 sum -8.244 -5.433 15.597 18.459 Atomic orbital electron populations 1.23952 0.94819 1.02890 1.00699 1.22736 0.96307 0.97340 1.00284 1.19529 0.96418 0.96710 0.95601 1.19061 0.92859 1.00031 0.96460 1.20412 1.00758 1.05699 0.91444 1.17664 0.92976 0.94389 0.87752 1.42250 1.20645 1.66783 1.11637 1.20575 0.96378 1.03796 0.98295 1.21219 0.99967 1.04389 0.93554 1.19059 0.94945 0.98366 0.86338 1.86156 1.30695 1.72923 1.33456 1.22345 0.80953 0.94985 0.97660 0.92716 1.22321 1.03486 0.95528 1.01068 1.19680 0.97006 0.95697 0.92247 1.21263 1.44877 0.92926 0.96472 0.95840 1.26016 0.95051 0.98741 0.99587 1.70092 1.50845 1.22869 1.15669 0.85645 0.78634 0.79790 0.78490 1.19646 1.20917 1.16245 0.87073 0.87354 0.88779 0.89407 0.92718 0.83931 0.76546 0.76582 0.84009 0.85152 0.89695 0.91483 0.91922 0.93264 0.95934 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.38 14.32 67.78 0.97 -3.41 16 2 C -0.15 -4.44 9.50 25.65 0.24 -4.19 16 3 C -0.05 -1.53 5.51 29.10 0.16 -1.37 16 4 C -0.08 -2.87 5.13 -19.78 -0.10 -2.97 16 5 C -0.16 -4.50 9.52 22.39 0.21 -4.29 16 6 C 0.18 4.46 6.76 38.15 0.26 4.71 16 7 N -0.87 -14.31 9.10 -51.27 -0.47 -14.78 16 8 C -0.17 -4.60 9.89 22.39 0.22 -4.38 16 9 C -0.17 -5.76 8.23 22.35 0.18 -5.57 16 10 C 0.06 2.30 6.57 22.49 0.15 2.45 16 11 O -0.32 -14.07 8.68 -93.66 -0.81 -14.88 16 12 C 0.10 4.00 2.17 30.59 0.07 4.07 16 13 H 0.05 2.31 6.32 -2.39 -0.02 2.30 16 14 C -0.17 -5.22 9.17 71.98 0.66 -4.56 16 15 C -0.01 -0.44 3.75 29.85 0.11 -0.33 16 16 C -0.52 -31.02 9.43 25.60 0.24 -30.78 16 17 H 0.02 1.59 7.99 -2.91 -0.02 1.56 16 18 C 0.00 0.13 5.47 84.65 0.46 0.59 16 19 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 20 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 24 H 0.11 2.19 8.06 -2.91 -0.02 2.16 16 25 H 0.11 2.19 7.84 -2.91 -0.02 2.17 16 26 H 0.09 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.09 2.49 7.70 -2.39 -0.02 2.47 16 28 H 0.05 2.27 7.68 -2.39 -0.02 2.25 16 29 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.41 5.00 8.84 -92.71 -0.82 4.18 16 31 H 0.40 5.06 8.84 -92.71 -0.82 4.24 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.13 4.15 5.41 -2.91 -0.02 4.14 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.07 1.89 6.89 -2.38 -0.02 1.87 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 2.21 7.20 -2.38 -0.02 2.20 16 38 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 39 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 Total: -1.00 -72.94 324.50 4.10 -68.84 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.64 Total: 25.33 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 3.84 Total: -50.03 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -0.17 Total: -76.23 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.81 Total: -14.88 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -72.94 4.10 -68.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.952 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds