Wall clock time and date at job start Mon Mar 30 2020 06:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99706 * 2 1 4 4 C 1.52996 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46897 * 115.55166 * 301.25679 * 4 3 2 6 6 C 1.46901 * 111.00240 * 301.44578 * 5 4 3 7 7 C 1.50703 * 109.47363 * 185.14116 * 6 5 4 8 8 C 1.38632 * 119.74995 * 89.99954 * 7 6 5 9 9 C 1.37618 * 120.25226 * 179.97438 * 8 7 6 10 10 C 1.40714 * 119.74019 * 0.02562 * 9 8 7 11 11 C 1.41399 * 120.24244 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00121 * 335.58743 * 11 10 9 13 13 C 1.39948 * 119.99931 * 155.58632 * 11 10 9 14 14 N 1.30829 * 119.99993 * 343.08289 * 13 11 10 15 15 Si 1.86791 * 120.00121 * 163.08773 * 13 11 10 16 16 H 1.48499 * 109.47224 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47383 * 119.99786 * 15 13 11 18 18 H 1.48501 * 109.47145 * 239.99658 * 15 13 11 19 19 C 1.40714 * 119.51512 * 0.25072 * 10 9 8 20 20 C 1.37620 * 119.74415 * 359.47363 * 19 10 9 21 21 C 1.52996 * 117.50091 * 86.92906 * 4 3 2 22 22 C 1.53004 * 117.49914 * 155.58822 * 4 3 2 23 23 H 1.09008 * 109.47236 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47117 * 299.99413 * 1 2 3 25 25 H 1.09002 * 109.47996 * 59.99330 * 1 2 3 26 26 H 1.09000 * 109.46660 * 60.00610 * 3 2 1 27 27 H 1.08995 * 109.47604 * 300.00620 * 3 2 1 28 28 H 1.00901 * 111.00301 * 65.39815 * 5 4 3 29 29 H 1.09000 * 109.46865 * 65.13987 * 6 5 4 30 30 H 1.08997 * 109.47048 * 305.14175 * 6 5 4 31 31 H 1.08003 * 119.87708 * 359.97364 * 8 7 6 32 32 H 1.07995 * 120.13385 * 179.97438 * 9 8 7 33 33 H 0.97001 * 120.00121 * 180.02562 * 14 13 11 34 34 H 1.08007 * 120.13183 * 179.72770 * 19 10 9 35 35 H 1.07998 * 119.88224 * 180.27219 * 20 19 10 36 36 H 1.09000 * 117.50208 * 215.00353 * 21 4 3 37 37 H 1.09001 * 117.49662 * 0.02562 * 21 4 3 38 38 H 1.08995 * 117.49872 * 359.97438 * 22 4 3 39 39 H 1.08999 * 117.49497 * 144.97509 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 4.1131 0.4490 1.1319 6 6 3.7434 1.0735 2.4091 7 6 4.4540 0.3701 3.5366 8 6 5.7026 0.8127 3.9454 9 6 6.3605 0.1783 4.9742 10 6 5.7613 -0.9239 5.6115 11 6 6.4280 -1.5839 6.6694 12 1 7.5043 -1.5337 6.7443 13 6 5.6933 -2.3023 7.6195 14 7 4.4056 -2.1036 7.7374 15 14 6.5513 -3.5446 8.7194 16 1 7.9985 -3.5821 8.3888 17 1 6.3777 -3.1506 10.1406 18 1 5.9595 -4.8893 8.5027 19 6 4.4963 -1.3681 5.1844 20 6 3.8542 -0.7149 4.1572 21 6 4.2333 1.0567 -1.3561 22 6 4.3369 2.3611 -0.5617 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 1.6885 1.8463 0.8901 27 1 1.6885 1.8465 -0.8899 28 1 3.8379 -0.5215 1.1110 29 1 2.6659 0.9949 2.5535 30 1 4.0326 2.1244 2.3969 31 1 6.1607 1.6586 3.4545 32 1 7.3333 0.5245 5.2908 33 1 3.8964 -2.6013 8.3962 34 1 4.0291 -2.2159 5.6635 35 1 2.8813 -1.0512 3.8306 36 1 5.1212 0.4266 -1.4075 37 1 3.6059 1.0590 -2.2474 38 1 3.7776 3.2207 -0.9307 39 1 5.2927 2.5892 -0.0901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697461535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:51 Heat of formation + Delta-G solvation = -6.866529 kcal Electronic energy + Delta-G solvation = -18983.289743 eV Core-core repulsion = 16084.055839 eV Total energy + Delta-G solvation = -2899.233905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.99707 -37.54668 -36.69832 -34.15856 -32.66198 -29.66658 -29.16548 -28.06721 -26.10864 -25.55550 -23.24867 -22.25247 -20.91677 -19.80609 -19.39541 -17.24011 -16.60521 -16.25658 -15.78992 -15.34602 -14.86888 -14.43241 -14.09936 -13.83128 -13.56488 -13.27527 -12.64410 -12.50054 -12.31349 -11.87817 -11.71076 -11.55757 -11.41239 -11.32840 -11.04114 -10.93229 -10.60471 -10.41662 -10.29048 -9.95423 -9.62399 -9.48108 -9.33665 -9.08928 -8.06338 -7.38435 -7.23276 -6.71430 -4.30357 2.77352 3.09522 3.14729 3.15323 3.20502 3.44135 3.96522 4.05850 4.37232 4.73019 4.80066 4.96642 5.09908 5.19598 5.24163 5.33839 5.54536 5.63235 5.66185 5.68672 5.78709 5.95981 5.96464 6.09585 6.24880 6.37978 6.45551 6.47634 7.00285 7.04737 7.12325 7.33945 7.44086 7.49912 7.67690 7.82572 7.95658 8.11443 8.21511 8.36144 8.69939 8.95041 9.03689 10.22959 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.004077 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.318260 B = 6866.201330 C = 7473.249944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.071 3.929 4 C 0.035 3.965 5 N -0.641 5.641 6 C 0.128 3.872 7 C -0.210 4.210 8 C -0.070 4.070 9 C -0.228 4.228 10 C 0.112 3.888 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.796 5.796 15 Si 0.907 3.093 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.272 1.272 19 C -0.165 4.165 20 C -0.093 4.093 21 C -0.157 4.157 22 C -0.155 4.155 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.349 0.651 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.279 0.721 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 4.827 -12.468 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.008 4.008 4 C -0.058 4.058 5 N -0.272 5.272 6 C 0.000 4.000 7 C -0.211 4.211 8 C -0.089 4.089 9 C -0.248 4.248 10 C 0.109 3.891 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.421 5.421 15 Si 0.731 3.269 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.198 1.198 19 C -0.185 4.185 20 C -0.112 4.112 21 C -0.195 4.195 22 C -0.192 4.192 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.169 0.831 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.250 4.905 -12.343 14.282 hybrid contribution -0.964 -0.564 0.717 1.327 sum -6.213 4.341 -11.627 13.879 Atomic orbital electron populations 1.22731 0.81238 1.02761 0.99693 1.87897 1.19416 1.27613 1.95317 1.22562 0.93250 0.84948 1.00055 1.21386 0.88363 1.02444 0.93560 1.60553 1.60183 1.06126 1.00319 1.20496 0.95601 0.97079 0.86776 1.18891 0.97766 1.02758 1.01719 1.20318 0.94075 0.98188 0.96287 1.20972 1.01171 1.00009 1.02655 1.17627 0.91669 0.89152 0.90633 1.19634 0.94881 1.27121 1.07649 0.90492 1.25904 0.94702 0.96140 0.97407 1.69840 1.07817 1.34480 1.29999 0.86290 0.80824 0.80407 0.79358 1.18415 1.20056 1.19751 1.21295 0.97563 1.01702 0.97927 1.20535 0.97708 0.95996 0.97002 1.23026 1.02833 1.00216 0.93402 1.23035 1.01933 0.91435 1.02828 0.89584 0.94127 0.94394 0.92882 0.93324 0.83134 0.96212 0.92246 0.89578 0.89158 0.91047 0.86505 0.89893 0.88044 0.89128 0.89163 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.31 10.63 -35.23 -0.37 -5.68 16 3 C 0.07 0.89 5.40 37.16 0.20 1.09 16 4 C 0.04 0.48 2.04 -131.61 -0.27 0.21 16 5 N -0.64 -10.82 6.58 -101.22 -0.67 -11.49 16 6 C 0.13 2.35 5.35 -4.97 -0.03 2.32 16 7 C -0.21 -4.67 5.46 -104.33 -0.57 -5.24 16 8 C -0.07 -1.61 9.67 -39.66 -0.38 -2.00 16 9 C -0.23 -5.77 9.80 -38.87 -0.38 -6.15 16 10 C 0.11 3.05 5.57 -106.82 -0.60 2.45 16 11 C -0.46 -12.55 9.06 -37.74 -0.34 -12.90 16 12 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 13 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 14 N -0.80 -20.91 10.92 55.55 0.61 -20.30 16 15 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 16 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 20 C -0.09 -2.23 9.67 -39.66 -0.38 -2.61 16 21 C -0.16 -1.86 10.17 -26.70 -0.27 -2.14 16 22 C -0.15 -1.81 10.18 -26.69 -0.27 -2.08 16 23 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.69 7.17 -51.93 -0.37 0.31 16 27 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.35 6.24 8.81 -39.29 -0.35 5.89 16 29 H 0.02 0.36 7.06 -51.93 -0.37 -0.01 16 30 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 31 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 34 H 0.12 3.21 6.14 -52.48 -0.32 2.88 16 35 H 0.08 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -28.21 328.99 -9.14 -37.35 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.02 Total: 9.71 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -2.61 Total: -28.47 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: -0.06 Total: -31.79 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.37 Total: -5.68 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.21 -9.14 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697461535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.487 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds