Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99706 * 2 1 4 4 C 1.52996 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46897 * 115.55166 * 301.25679 * 4 3 2 6 6 C 1.46901 * 111.00240 * 301.44578 * 5 4 3 7 7 C 1.50703 * 109.47363 * 185.14116 * 6 5 4 8 8 C 1.38632 * 119.74995 * 89.99954 * 7 6 5 9 9 C 1.37618 * 120.25226 * 179.97438 * 8 7 6 10 10 C 1.40714 * 119.74019 * 0.02562 * 9 8 7 11 11 C 1.41399 * 120.24244 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00121 * 335.58743 * 11 10 9 13 13 C 1.39948 * 119.99931 * 155.58632 * 11 10 9 14 14 N 1.30829 * 119.99993 * 343.08289 * 13 11 10 15 15 Si 1.86791 * 120.00121 * 163.08773 * 13 11 10 16 16 H 1.48499 * 109.47224 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47383 * 119.99786 * 15 13 11 18 18 H 1.48501 * 109.47145 * 239.99658 * 15 13 11 19 19 C 1.40714 * 119.51512 * 0.25072 * 10 9 8 20 20 C 1.37620 * 119.74415 * 359.47363 * 19 10 9 21 21 C 1.52996 * 117.50091 * 86.92906 * 4 3 2 22 22 C 1.53004 * 117.49914 * 155.58822 * 4 3 2 23 23 H 1.09008 * 109.47236 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47117 * 299.99413 * 1 2 3 25 25 H 1.09002 * 109.47996 * 59.99330 * 1 2 3 26 26 H 1.09000 * 109.46660 * 60.00610 * 3 2 1 27 27 H 1.08995 * 109.47604 * 300.00620 * 3 2 1 28 28 H 1.00901 * 111.00301 * 65.39815 * 5 4 3 29 29 H 1.09000 * 109.46865 * 65.13987 * 6 5 4 30 30 H 1.08997 * 109.47048 * 305.14175 * 6 5 4 31 31 H 1.08003 * 119.87708 * 359.97364 * 8 7 6 32 32 H 1.07995 * 120.13385 * 179.97438 * 9 8 7 33 33 H 0.97001 * 120.00121 * 180.02562 * 14 13 11 34 34 H 1.08007 * 120.13183 * 179.72770 * 19 10 9 35 35 H 1.07998 * 119.88224 * 180.27219 * 20 19 10 36 36 H 1.09000 * 117.50208 * 215.00353 * 21 4 3 37 37 H 1.09001 * 117.49662 * 0.02562 * 21 4 3 38 38 H 1.08995 * 117.49872 * 359.97438 * 22 4 3 39 39 H 1.08999 * 117.49497 * 144.97509 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 4.1131 0.4490 1.1319 6 6 3.7434 1.0735 2.4091 7 6 4.4540 0.3701 3.5366 8 6 5.7026 0.8127 3.9454 9 6 6.3605 0.1783 4.9742 10 6 5.7613 -0.9239 5.6115 11 6 6.4280 -1.5839 6.6694 12 1 7.5043 -1.5337 6.7443 13 6 5.6933 -2.3023 7.6195 14 7 4.4056 -2.1036 7.7374 15 14 6.5513 -3.5446 8.7194 16 1 7.9985 -3.5821 8.3888 17 1 6.3777 -3.1506 10.1406 18 1 5.9595 -4.8893 8.5027 19 6 4.4963 -1.3681 5.1844 20 6 3.8542 -0.7149 4.1572 21 6 4.2333 1.0567 -1.3561 22 6 4.3369 2.3611 -0.5617 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 1.6885 1.8463 0.8901 27 1 1.6885 1.8465 -0.8899 28 1 3.8379 -0.5215 1.1110 29 1 2.6659 0.9949 2.5535 30 1 4.0326 2.1244 2.3969 31 1 6.1607 1.6586 3.4545 32 1 7.3333 0.5245 5.2908 33 1 3.8964 -2.6013 8.3962 34 1 4.0291 -2.2159 5.6635 35 1 2.8813 -1.0512 3.8306 36 1 5.1212 0.4266 -1.4075 37 1 3.6059 1.0590 -2.2474 38 1 3.7776 3.2207 -0.9307 39 1 5.2927 2.5892 -0.0901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697461535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = -23.499442 kcal Electronic energy + Delta-G solvation = -18984.011000 eV Core-core repulsion = 16084.055839 eV Total energy + Delta-G solvation = -2899.955162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11679 -39.29013 -37.72636 -35.91870 -34.23437 -31.44739 -31.07828 -28.99336 -27.84488 -26.44578 -24.90646 -23.25059 -22.84229 -21.60148 -20.48609 -19.20763 -17.63851 -17.32442 -17.08187 -16.74780 -16.26248 -15.75774 -15.66190 -15.39581 -15.05398 -14.65942 -14.20815 -13.84006 -13.79251 -13.35602 -13.30245 -12.91375 -12.82915 -12.61104 -12.45353 -12.35820 -12.27490 -12.01436 -11.51788 -11.33568 -11.23252 -11.01583 -10.88573 -10.54821 -9.43806 -9.29389 -9.14971 -8.62405 -6.32584 0.94821 1.17150 1.37985 1.49947 1.53629 2.21504 2.52210 2.70967 3.12979 3.27554 3.80051 3.87971 4.02051 4.17927 4.26970 4.36467 4.38260 4.48115 4.48790 4.60017 4.62432 4.69168 4.80302 4.80691 4.82036 4.89735 5.05837 5.08810 5.17615 5.35094 5.38913 5.49278 5.72685 5.96943 6.11993 6.15606 6.22897 6.29268 6.41021 6.50543 6.72076 6.95793 7.05729 8.34731 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.004077 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.318260 B = 6866.201330 C = 7473.249944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.073 3.927 4 C 0.011 3.989 5 N -0.649 5.649 6 C 0.140 3.860 7 C -0.198 4.198 8 C -0.072 4.072 9 C -0.244 4.244 10 C 0.079 3.921 11 C -0.503 4.503 12 H 0.073 0.927 13 C 0.035 3.965 14 N -0.828 5.828 15 Si 0.983 3.017 16 H -0.259 1.259 17 H -0.264 1.264 18 H -0.264 1.264 19 C -0.189 4.189 20 C -0.097 4.097 21 C -0.149 4.149 22 C -0.142 4.142 23 H 0.092 0.908 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.340 0.660 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.287 0.713 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 5.630 -13.882 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.005 4.005 4 C -0.081 4.081 5 N -0.278 5.278 6 C 0.012 3.988 7 C -0.200 4.200 8 C -0.091 4.091 9 C -0.264 4.264 10 C 0.077 3.923 11 C -0.532 4.532 12 H 0.092 0.908 13 C -0.180 4.180 14 N -0.455 5.455 15 Si 0.803 3.197 16 H -0.182 1.182 17 H -0.189 1.189 18 H -0.189 1.189 19 C -0.209 4.209 20 C -0.116 4.116 21 C -0.186 4.186 22 C -0.180 4.180 23 H 0.111 0.889 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.710 5.731 -13.778 15.978 hybrid contribution -0.888 -0.725 1.011 1.528 sum -6.598 5.006 -12.767 15.219 Atomic orbital electron populations 1.22895 0.79691 1.03623 1.00688 1.87860 1.21232 1.28472 1.95518 1.22551 0.92287 0.84737 1.00914 1.21571 0.89400 1.03917 0.93217 1.60438 1.60924 1.05871 1.00598 1.20326 0.95077 0.97087 0.86313 1.19325 0.97300 1.01469 1.01874 1.20625 0.94281 0.98590 0.95589 1.21185 1.01726 0.99993 1.03472 1.17967 0.92451 0.90294 0.91597 1.19871 0.94977 1.29414 1.08972 0.90833 1.26762 0.95314 0.97409 0.98481 1.69890 1.09221 1.35394 1.30949 0.85154 0.79450 0.77618 0.77435 1.18226 1.18922 1.18882 1.21257 0.98088 1.02190 0.99348 1.20743 0.98259 0.96289 0.96326 1.23084 1.02365 1.00055 0.93142 1.23121 1.01289 0.91882 1.01698 0.88927 0.94083 0.92386 0.93518 0.90846 0.84167 0.96027 0.91048 0.86894 0.88650 0.90230 0.88288 0.88405 0.88999 0.87091 0.86519 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -10.62 10.63 -148.98 -1.58 -12.20 16 3 C 0.07 1.67 5.40 71.98 0.39 2.06 16 4 C 0.01 0.28 2.04 3.53 0.01 0.29 16 5 N -0.65 -20.92 6.58 -474.16 -3.12 -24.04 16 6 C 0.14 4.90 5.35 85.56 0.46 5.36 16 7 C -0.20 -8.69 5.46 -19.67 -0.11 -8.80 16 8 C -0.07 -3.29 9.67 22.22 0.21 -3.08 16 9 C -0.24 -12.55 9.80 22.73 0.22 -12.33 16 10 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 11 C -0.50 -28.25 9.06 23.46 0.21 -28.04 16 12 H 0.07 4.00 7.90 -2.91 -0.02 3.98 16 13 C 0.03 1.80 5.16 85.26 0.44 2.24 16 14 N -0.83 -44.71 10.92 21.83 0.24 -44.47 16 15 Si 0.98 39.38 29.59 68.60 2.03 41.41 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 20 C -0.10 -4.70 9.67 22.22 0.21 -4.48 16 21 C -0.15 -3.13 10.17 30.62 0.31 -2.82 16 22 C -0.14 -2.88 10.18 30.62 0.31 -2.57 16 23 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 1.10 7.17 -2.39 -0.02 1.08 16 27 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 28 H 0.34 11.90 8.81 -89.69 -0.79 11.11 16 29 H 0.02 0.75 7.06 -2.39 -0.02 0.74 16 30 H 0.07 2.34 8.07 -2.39 -0.02 2.33 16 31 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 33 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 34 H 0.10 5.70 6.14 -2.91 -0.02 5.68 16 35 H 0.10 4.33 8.06 -2.91 -0.02 4.30 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -62.05 328.99 1.81 -60.24 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.24 Total: 35.34 kcal Atomic # 6 Polarization: -60.27 SS G_CDS: 4.00 Total: -56.27 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -2.88 Total: -68.52 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.58 Total: -12.20 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -62.05 1.81 -60.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697461535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.745 kcal (2) G-P(sol) polarization free energy of solvation -62.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds