Wall clock time and date at job start Mon Mar 30 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99635 * 2 1 4 4 C 1.53000 * 109.46790 * 180.02562 * 3 2 1 5 5 N 1.46902 * 115.56439 * 325.39512 * 4 3 2 6 6 C 1.46902 * 110.99900 * 276.27635 * 5 4 3 7 7 H 1.09000 * 109.46853 * 326.93822 * 6 5 4 8 8 C 1.50697 * 109.47230 * 86.93647 * 6 5 4 9 9 H 1.07999 * 119.99641 * 57.25788 * 8 6 5 10 10 C 1.37872 * 119.99986 * 237.25120 * 8 6 5 11 11 N 1.31518 * 119.99761 * 175.50705 * 10 8 6 12 12 Si 1.86794 * 120.00317 * 355.50945 * 10 8 6 13 13 H 1.48505 * 109.47210 * 84.39437 * 12 10 8 14 14 H 1.48496 * 109.47461 * 204.39310 * 12 10 8 15 15 H 1.48494 * 109.47391 * 324.39690 * 12 10 8 16 16 C 1.50699 * 109.46979 * 206.94109 * 6 5 4 17 17 C 1.38235 * 119.99945 * 316.06989 * 16 6 5 18 18 C 1.38232 * 120.00211 * 179.78836 * 17 16 6 19 19 C 1.38237 * 119.99833 * 0.43782 * 18 17 16 20 20 C 1.38238 * 119.99897 * 359.81561 * 19 18 17 21 21 C 1.38230 * 120.00179 * 136.33713 * 16 6 5 22 22 C 1.53004 * 117.49903 * 179.70754 * 4 3 2 23 23 C 1.53000 * 59.99977 * 252.51172 * 22 4 3 24 24 H 1.08999 * 109.47313 * 300.00020 * 1 2 3 25 25 H 1.08997 * 109.47729 * 59.99817 * 1 2 3 26 26 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47461 * 60.00332 * 3 2 1 28 28 H 1.09004 * 109.47113 * 299.99933 * 3 2 1 29 29 H 1.00901 * 110.99635 * 40.22095 * 5 4 3 30 30 H 0.97003 * 120.00147 * 180.02562 * 11 10 8 31 31 H 1.07995 * 119.99891 * 359.97438 * 17 16 6 32 32 H 1.07995 * 120.00674 * 180.27317 * 18 17 16 33 33 H 1.08001 * 120.00626 * 179.83467 * 19 18 17 34 34 H 1.08000 * 120.00213 * 179.97438 * 20 19 18 35 35 H 1.08004 * 120.00009 * 359.97438 * 21 16 6 36 36 H 1.08996 * 117.50340 * 145.02071 * 22 4 3 37 37 H 1.09003 * 117.50027 * 359.97438 * 22 4 3 38 38 H 1.08995 * 117.50422 * 107.49120 * 23 22 4 39 39 H 1.09003 * 117.49680 * 252.51321 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.0815 0.0471 0.7515 6 6 4.1998 0.3686 2.1800 7 1 4.4321 1.4272 2.2961 8 6 2.8977 0.0612 2.8736 9 1 2.4830 -0.9349 2.8268 10 6 2.2359 1.0515 3.5681 11 7 1.0575 0.8075 4.0985 12 14 3.0131 2.7398 3.7555 13 1 2.7112 3.5598 2.5548 14 1 2.4619 3.4073 4.9620 15 1 4.4839 2.5946 3.8986 16 6 5.3019 -0.4576 2.7913 17 6 5.4089 -1.8015 2.4859 18 6 6.4224 -2.5584 3.0431 19 6 7.3237 -1.9735 3.9129 20 6 7.2136 -0.6307 4.2223 21 6 6.2026 0.1272 3.6616 22 6 4.3468 2.4818 -0.0077 23 6 4.2776 1.6159 -1.2671 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.5215 -0.7806 0.6124 30 1 0.5917 1.5044 4.5868 31 1 4.7023 -2.2595 1.8096 32 1 6.5087 -3.6074 2.8012 33 1 8.1141 -2.5653 4.3504 34 1 7.9175 -0.1737 4.9021 35 1 6.1168 1.1763 3.9033 36 1 5.2857 2.4912 0.5458 37 1 3.7940 3.4212 -0.0123 38 1 3.6794 1.9855 -2.0999 39 1 5.1711 1.0554 -1.5422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697492143.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:05 Heat of formation + Delta-G solvation = 9.849366 kcal Electronic energy + Delta-G solvation = -20363.138397 eV Core-core repulsion = 17464.629348 eV Total energy + Delta-G solvation = -2898.509049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.83125 -37.97034 -36.13820 -33.98229 -31.84020 -30.18140 -29.52056 -27.44561 -26.29747 -24.84729 -22.75631 -22.02246 -21.79111 -19.89555 -18.67746 -17.18872 -16.21950 -15.92820 -15.34240 -15.10127 -14.74713 -14.27771 -14.21804 -13.80674 -13.28092 -12.89785 -12.75479 -12.60012 -12.18952 -11.98548 -11.74489 -11.60148 -11.14621 -11.07951 -10.94897 -10.69697 -10.49062 -10.38822 -9.99159 -9.77841 -9.47728 -9.27944 -8.86105 -8.61547 -8.16697 -7.90130 -7.31872 -6.18315 -4.15655 2.16574 2.23165 3.15867 3.25421 3.26847 4.11846 4.29044 4.50317 4.60344 4.96899 5.20224 5.38610 5.53100 5.57677 5.59059 5.67206 5.75372 5.79959 5.96862 5.99364 6.04697 6.12578 6.22679 6.27715 6.32001 6.34648 6.45761 6.50377 6.55763 6.62495 6.80964 6.90174 7.19709 7.29788 7.46417 7.59063 7.79964 7.82203 8.08386 8.34392 8.61010 8.90458 9.44388 10.94306 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.008898 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.919220 B = 3146.111007 C = 3589.314059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.370 6.370 3 C 0.087 3.913 4 C 0.069 3.931 5 N -0.646 5.646 6 C 0.204 3.796 7 H 0.051 0.949 8 C -0.512 4.512 9 H 0.079 0.921 10 C 0.081 3.919 11 N -0.890 5.890 12 Si 0.860 3.140 13 H -0.272 1.272 14 H -0.289 1.289 15 H -0.263 1.263 16 C -0.016 4.016 17 C -0.103 4.103 18 C -0.126 4.126 19 C -0.152 4.152 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.176 4.176 23 C -0.167 4.167 24 H 0.045 0.955 25 H 0.025 0.975 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.351 0.649 30 H 0.263 0.737 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 0.636 -6.461 8.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.288 6.288 3 C 0.008 3.992 4 C -0.025 4.025 5 N -0.277 5.277 6 C 0.096 3.904 7 H 0.069 0.931 8 C -0.550 4.550 9 H 0.097 0.903 10 C -0.123 4.123 11 N -0.527 5.527 12 Si 0.688 3.312 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.188 1.188 16 C -0.017 4.017 17 C -0.122 4.122 18 C -0.144 4.144 19 C -0.170 4.170 20 C -0.142 4.142 21 C -0.153 4.153 22 C -0.213 4.213 23 C -0.205 4.205 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.171 0.829 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.763 0.689 -6.484 8.702 hybrid contribution -0.936 1.237 0.726 1.713 sum 4.828 1.926 -5.757 7.756 Atomic orbital electron populations 1.22572 0.81786 1.01998 0.99153 1.87770 1.18856 1.27016 1.95136 1.22296 0.92555 0.85289 0.99045 1.21108 0.88970 0.93639 0.98745 1.60845 1.52646 1.04061 1.10101 1.18673 0.92192 0.94417 0.85074 0.93058 1.21425 1.02368 0.98989 1.32268 0.90316 1.25000 0.94444 0.97962 0.94853 1.69901 1.13340 1.33784 1.35714 0.87164 0.80543 0.85466 0.78030 1.19806 1.21548 1.18786 1.20312 0.92944 0.94520 0.93897 1.20854 0.97641 0.93886 0.99776 1.21019 0.96123 0.99014 0.98234 1.20831 1.00267 0.95125 1.00756 1.20922 0.98597 0.94373 1.00294 1.21004 0.95642 0.99659 0.99025 1.23025 1.02210 0.94093 1.02011 1.23156 1.03038 1.03118 0.91156 0.93595 0.95688 0.90341 0.92456 0.94981 0.82889 0.92718 0.86627 0.87299 0.87493 0.87394 0.87213 0.88463 0.89514 0.89621 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 11.01 101.05 1.11 1.84 16 2 O -0.37 -7.50 9.51 -35.23 -0.34 -7.83 16 3 C 0.09 1.70 5.52 37.16 0.21 1.90 16 4 C 0.07 1.31 2.19 -131.60 -0.29 1.02 16 5 N -0.65 -13.38 5.89 -95.46 -0.56 -13.94 16 6 C 0.20 4.64 2.07 -70.02 -0.14 4.50 16 7 H 0.05 1.20 3.20 -51.93 -0.17 1.04 16 8 C -0.51 -13.43 8.16 -34.44 -0.28 -13.71 16 9 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 10 C 0.08 2.19 5.23 -17.82 -0.09 2.10 16 11 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 12 Si 0.86 20.62 26.88 -169.99 -4.57 16.05 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.26 -6.07 5.86 56.52 0.33 -5.74 16 16 C -0.02 -0.34 4.93 -104.63 -0.52 -0.85 16 17 C -0.10 -2.06 9.29 -39.58 -0.37 -2.43 16 18 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 19 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 20 C -0.12 -2.20 10.05 -39.58 -0.40 -2.60 16 21 C -0.13 -2.76 9.67 -39.59 -0.38 -3.14 16 22 C -0.18 -3.04 9.20 -26.73 -0.25 -3.29 16 23 C -0.17 -2.63 10.10 -26.73 -0.27 -2.90 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.28 7.81 -51.93 -0.41 0.87 16 28 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 29 H 0.35 7.58 6.81 -39.29 -0.27 7.32 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.12 2.27 7.45 -52.49 -0.39 1.88 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.11 2.24 7.12 -52.48 -0.37 1.86 16 36 H 0.10 1.72 7.84 -51.93 -0.41 1.31 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 39 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -28.37 321.25 -8.17 -36.54 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.85 Total: 12.42 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -2.47 Total: -23.14 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.21 Total: -38.88 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.34 Total: -7.83 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.57 Total: 16.05 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.37 -8.17 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697492143.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.385 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds