Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 C 1.52996 * 109.46828 * 240.00337 * 2 1 3 5 5 N 1.46904 * 109.47100 * 180.02562 * 4 2 1 6 6 C 1.46901 * 110.99764 * 180.02562 * 5 4 2 7 7 C 1.53009 * 117.49541 * 223.74293 * 6 5 4 8 8 C 1.53008 * 117.49665 * 155.08892 * 6 5 4 9 9 O 1.42900 * 109.46976 * 120.00692 * 2 1 3 10 10 C 1.35673 * 116.99730 * 274.31259 * 9 2 1 11 11 C 1.39316 * 119.81888 * 5.36093 * 10 9 2 12 12 C 1.36438 * 120.18572 * 179.97438 * 11 10 9 13 13 C 1.40834 * 119.80922 * 0.27319 * 12 11 10 14 14 C 1.41215 * 120.17642 * 179.72146 * 13 12 11 15 15 H 1.08008 * 120.00042 * 27.61992 * 14 13 12 16 16 C 1.39885 * 119.99979 * 207.61720 * 14 13 12 17 17 N 1.30876 * 120.00264 * 12.67802 * 16 14 13 18 18 Si 1.86813 * 119.99840 * 192.68394 * 16 14 13 19 19 H 1.48494 * 109.47013 * 89.99732 * 18 16 14 20 20 H 1.48498 * 109.46991 * 209.99943 * 18 16 14 21 21 H 1.48494 * 109.46872 * 329.99609 * 18 16 14 22 22 C 1.40832 * 119.64622 * 359.43406 * 13 12 11 23 23 C 1.36442 * 119.80519 * 0.56492 * 22 13 12 24 24 H 1.09008 * 109.46654 * 299.99661 * 1 2 3 25 25 H 1.08997 * 109.47292 * 59.99332 * 1 2 3 26 26 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47256 * 299.99883 * 4 2 1 28 28 H 1.08998 * 109.47334 * 59.99771 * 4 2 1 29 29 H 1.00899 * 110.99856 * 56.04647 * 5 4 2 30 30 H 1.08998 * 115.55444 * 9.41339 * 6 5 4 31 31 H 1.08992 * 117.49888 * 0.02562 * 7 6 5 32 32 H 1.08998 * 117.49462 * 145.02184 * 7 6 5 33 33 H 1.09001 * 117.49720 * 214.97755 * 8 6 5 34 34 H 1.08994 * 117.49598 * 359.96850 * 8 6 5 35 35 H 1.07995 * 119.90833 * 359.97438 * 11 10 9 36 36 H 1.08004 * 120.09394 * 180.02562 * 12 11 10 37 37 H 0.97003 * 120.00090 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.09969 * 180.29105 * 22 13 12 39 39 H 1.08003 * 119.90312 * 179.70150 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5090 -0.7217 -1.2490 6 6 4.0353 -1.4069 -2.4371 7 6 5.2034 -2.3743 -2.2352 8 6 5.4379 -1.0213 -2.9116 9 8 2.0063 -0.6738 1.1667 10 6 2.1259 0.0646 2.2986 11 6 1.6846 1.3859 2.3137 12 6 1.8008 2.1351 3.4481 13 6 2.3739 1.5707 4.6041 14 6 2.5033 2.3409 5.7807 15 1 1.8147 3.1500 5.9749 16 6 3.5232 2.0558 6.6946 17 7 4.4999 1.2532 6.3560 18 14 3.4909 2.8205 8.3988 19 1 2.7494 1.9298 9.3271 20 1 4.8817 2.9980 8.8881 21 1 2.8160 4.1418 8.3356 22 6 2.8117 0.2324 4.5824 23 6 2.6883 -0.5031 3.4398 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2073 -2.1392 29 1 3.8702 -1.1357 -0.4027 30 1 3.2981 -1.6601 -3.1990 31 1 5.5810 -2.5026 -1.2208 32 1 5.2349 -3.2636 -2.8645 33 1 5.6235 -1.0211 -3.9857 34 1 5.9697 -0.2589 -2.3425 35 1 1.2494 1.8184 1.4250 36 1 1.4578 3.1592 3.4582 37 1 5.2073 1.0558 6.9896 38 1 3.2480 -0.2092 5.4662 39 1 3.0280 -1.5281 3.4199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699417838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = 1.251907 kcal Electronic energy + Delta-G solvation = -18993.011719 eV Core-core repulsion = 16094.129856 eV Total energy + Delta-G solvation = -2898.881863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.18447 -37.79978 -36.54274 -33.94984 -33.03580 -30.89842 -29.43157 -28.95712 -25.35871 -24.60505 -22.41829 -22.13854 -21.18104 -20.71528 -19.84630 -17.41736 -17.08131 -16.17231 -15.66709 -15.12230 -14.77045 -14.37540 -13.96214 -13.83410 -13.23720 -13.13079 -12.63092 -12.47325 -12.16663 -12.07841 -11.81690 -11.59510 -11.52322 -11.26213 -11.18371 -11.06954 -10.91862 -10.67408 -10.43134 -10.27395 -9.85158 -9.72414 -9.26114 -9.04080 -8.19887 -7.59989 -6.93305 -6.64611 -4.23215 2.81737 2.98995 3.11343 3.14689 3.23898 3.75423 3.99147 4.04621 4.12173 4.68898 4.85219 4.90928 5.06152 5.10636 5.36114 5.38044 5.54369 5.58984 5.66756 5.70085 5.76401 5.88421 5.92797 6.10461 6.11465 6.14452 6.27820 6.37746 6.77588 7.02158 7.06938 7.16330 7.24286 7.41892 7.51331 7.60356 7.83801 8.04891 8.25078 8.49970 8.70051 8.95166 9.02888 10.30300 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.004123 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.177921 B = 6790.012523 C = 7440.071614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.076 0.924 4 C 0.070 3.930 5 N -0.658 5.658 6 C 0.024 3.976 7 C -0.209 4.209 8 C -0.174 4.174 9 O -0.325 6.325 10 C 0.003 3.997 11 C -0.169 4.169 12 C -0.194 4.194 13 C 0.087 3.913 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.807 5.807 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.128 4.128 23 C -0.125 4.125 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.356 0.644 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.278 0.722 38 H 0.126 0.874 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 -4.580 -12.436 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.029 3.971 3 H 0.094 0.906 4 C -0.059 4.059 5 N -0.289 5.289 6 C -0.087 4.087 7 C -0.248 4.248 8 C -0.212 4.212 9 O -0.241 6.241 10 C -0.040 4.040 11 C -0.188 4.188 12 C -0.213 4.213 13 C 0.084 3.916 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.434 5.434 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.147 4.147 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.178 0.822 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.594 -4.230 -12.614 13.399 hybrid contribution -0.093 -0.311 0.917 0.972 sum -1.687 -4.541 -11.697 12.660 Atomic orbital electron populations 1.22298 0.95881 1.02565 1.02548 1.22139 0.93195 0.97394 0.84393 0.90623 1.22072 0.87639 0.99256 0.96966 1.60164 1.07418 1.56981 1.04372 1.22401 0.91004 0.99402 0.95926 1.23438 1.04728 0.94032 1.02574 1.23123 0.99735 0.98070 1.00257 1.85817 1.83107 1.38174 1.16966 1.18558 1.07566 0.91453 0.86453 1.20446 1.05875 0.94023 0.98429 1.20620 1.09305 0.98280 0.93132 1.17593 0.90434 0.91585 0.91952 1.19456 1.12281 1.14846 1.03005 0.90706 1.25840 0.94226 0.94266 0.99910 1.69806 1.08163 1.29962 1.35455 0.86305 0.78106 0.80249 0.81951 1.19451 1.20416 1.18798 1.20997 1.03090 0.93859 0.96796 1.19842 1.03363 0.99016 0.92151 0.91278 0.92003 0.92157 0.94458 0.89937 0.82245 0.87634 0.88538 0.89008 0.88985 0.88335 0.88517 0.88806 0.91084 0.85663 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.18 37.16 0.34 -2.05 16 2 C 0.09 1.36 2.49 -26.73 -0.07 1.29 16 3 H 0.08 1.29 6.24 -51.93 -0.32 0.96 16 4 C 0.07 0.92 5.27 -3.82 -0.02 0.90 16 5 N -0.66 -9.21 6.78 -106.71 -0.72 -9.93 16 6 C 0.02 0.27 6.31 -67.70 -0.43 -0.16 16 7 C -0.21 -2.20 10.23 -26.69 -0.27 -2.47 16 8 C -0.17 -1.85 10.46 -26.69 -0.28 -2.13 16 9 O -0.32 -6.37 9.12 -18.72 -0.17 -6.55 16 10 C 0.00 0.06 6.63 -38.78 -0.26 -0.19 16 11 C -0.17 -3.81 8.20 -39.83 -0.33 -4.14 16 12 C -0.19 -4.79 9.74 -39.25 -0.38 -5.17 16 13 C 0.09 2.32 5.55 -106.80 -0.59 1.73 16 14 C -0.47 -12.49 9.05 -37.84 -0.34 -12.83 16 15 H 0.07 1.93 7.88 -52.48 -0.41 1.52 16 16 C 0.07 1.86 5.22 -17.34 -0.09 1.77 16 17 N -0.81 -21.18 10.88 55.54 0.60 -20.58 16 18 Si 0.91 19.00 29.58 -169.99 -5.03 13.97 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.13 -3.35 8.61 -39.25 -0.34 -3.69 16 23 C -0.12 -3.01 9.92 -39.83 -0.40 -3.40 16 24 H 0.07 1.06 6.99 -51.92 -0.36 0.69 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.36 5.51 7.91 -39.29 -0.31 5.20 16 30 H 0.11 1.06 7.90 -51.93 -0.41 0.65 16 31 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.92 5.43 -52.49 -0.28 1.63 16 36 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 37 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 38 H 0.13 3.37 6.22 -52.49 -0.33 3.05 16 39 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -27.71 322.60 -9.70 -37.40 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.79 Total: 11.36 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: -3.45 Total: -30.54 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: -0.12 Total: -30.51 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.17 Total: -6.55 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.71 -9.70 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699417838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.656 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds