Wall clock time and date at job start Mon Mar 30 2020 06:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 C 1.52996 * 109.46828 * 240.00337 * 2 1 3 5 5 N 1.46904 * 109.47100 * 180.02562 * 4 2 1 6 6 C 1.46901 * 110.99764 * 180.02562 * 5 4 2 7 7 C 1.53009 * 117.49541 * 223.74293 * 6 5 4 8 8 C 1.53008 * 117.49665 * 155.08892 * 6 5 4 9 9 O 1.42900 * 109.46976 * 120.00692 * 2 1 3 10 10 C 1.35673 * 116.99730 * 274.31259 * 9 2 1 11 11 C 1.39316 * 119.81888 * 5.36093 * 10 9 2 12 12 C 1.36438 * 120.18572 * 179.97438 * 11 10 9 13 13 C 1.40834 * 119.80922 * 0.27319 * 12 11 10 14 14 C 1.41215 * 120.17642 * 179.72146 * 13 12 11 15 15 H 1.08008 * 120.00042 * 27.61992 * 14 13 12 16 16 C 1.39885 * 119.99979 * 207.61720 * 14 13 12 17 17 N 1.30876 * 120.00264 * 12.67802 * 16 14 13 18 18 Si 1.86813 * 119.99840 * 192.68394 * 16 14 13 19 19 H 1.48494 * 109.47013 * 89.99732 * 18 16 14 20 20 H 1.48498 * 109.46991 * 209.99943 * 18 16 14 21 21 H 1.48494 * 109.46872 * 329.99609 * 18 16 14 22 22 C 1.40832 * 119.64622 * 359.43406 * 13 12 11 23 23 C 1.36442 * 119.80519 * 0.56492 * 22 13 12 24 24 H 1.09008 * 109.46654 * 299.99661 * 1 2 3 25 25 H 1.08997 * 109.47292 * 59.99332 * 1 2 3 26 26 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47256 * 299.99883 * 4 2 1 28 28 H 1.08998 * 109.47334 * 59.99771 * 4 2 1 29 29 H 1.00899 * 110.99856 * 56.04647 * 5 4 2 30 30 H 1.08998 * 115.55444 * 9.41339 * 6 5 4 31 31 H 1.08992 * 117.49888 * 0.02562 * 7 6 5 32 32 H 1.08998 * 117.49462 * 145.02184 * 7 6 5 33 33 H 1.09001 * 117.49720 * 214.97755 * 8 6 5 34 34 H 1.08994 * 117.49598 * 359.96850 * 8 6 5 35 35 H 1.07995 * 119.90833 * 359.97438 * 11 10 9 36 36 H 1.08004 * 120.09394 * 180.02562 * 12 11 10 37 37 H 0.97003 * 120.00090 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.09969 * 180.29105 * 22 13 12 39 39 H 1.08003 * 119.90312 * 179.70150 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5090 -0.7217 -1.2490 6 6 4.0353 -1.4069 -2.4371 7 6 5.2034 -2.3743 -2.2352 8 6 5.4379 -1.0213 -2.9116 9 8 2.0063 -0.6738 1.1667 10 6 2.1259 0.0646 2.2986 11 6 1.6846 1.3859 2.3137 12 6 1.8008 2.1351 3.4481 13 6 2.3739 1.5707 4.6041 14 6 2.5033 2.3409 5.7807 15 1 1.8147 3.1500 5.9749 16 6 3.5232 2.0558 6.6946 17 7 4.4999 1.2532 6.3560 18 14 3.4909 2.8205 8.3988 19 1 2.7494 1.9298 9.3271 20 1 4.8817 2.9980 8.8881 21 1 2.8160 4.1418 8.3356 22 6 2.8117 0.2324 4.5824 23 6 2.6883 -0.5031 3.4398 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2073 -2.1392 29 1 3.8702 -1.1357 -0.4027 30 1 3.2981 -1.6601 -3.1990 31 1 5.5810 -2.5026 -1.2208 32 1 5.2349 -3.2636 -2.8645 33 1 5.6235 -1.0211 -3.9857 34 1 5.9697 -0.2589 -2.3425 35 1 1.2494 1.8184 1.4250 36 1 1.4578 3.1592 3.4582 37 1 5.2073 1.0558 6.9896 38 1 3.2480 -0.2092 5.4662 39 1 3.0280 -1.5281 3.4199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699417838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:26 Heat of formation + Delta-G solvation = -14.076707 kcal Electronic energy + Delta-G solvation = -18993.676418 eV Core-core repulsion = 16094.129856 eV Total energy + Delta-G solvation = -2899.546561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77039 -38.93134 -38.13219 -35.44910 -34.61380 -32.19875 -31.17947 -30.84870 -26.92055 -26.01190 -23.74998 -23.23707 -22.59690 -22.10442 -21.35183 -19.26307 -18.74421 -17.19933 -17.02910 -16.70603 -16.18380 -15.76367 -15.70415 -14.99878 -14.80860 -14.57211 -14.11004 -13.82788 -13.75416 -13.49900 -13.15138 -13.00579 -12.92637 -12.77657 -12.61919 -12.38789 -12.26895 -12.08030 -11.68036 -11.61642 -11.49831 -11.18480 -11.06122 -10.88621 -9.52811 -9.18978 -8.82990 -8.54049 -6.22652 0.97723 1.05580 1.40149 1.52443 1.53882 2.24555 2.60941 2.78922 2.87896 3.11905 3.71989 3.93049 4.02446 4.06987 4.11946 4.21826 4.27265 4.35714 4.39203 4.61401 4.66784 4.71530 4.78990 4.83566 4.94397 4.99257 5.06010 5.11780 5.23951 5.27418 5.28661 5.34425 5.62347 5.68933 5.92216 6.08434 6.11785 6.28248 6.30233 6.60054 6.84590 6.98425 7.13152 8.42656 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.004123 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.177921 B = 6790.012523 C = 7440.071614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 H 0.064 0.936 4 C 0.076 3.924 5 N -0.676 5.676 6 C 0.014 3.986 7 C -0.206 4.206 8 C -0.173 4.173 9 O -0.329 6.329 10 C 0.018 3.982 11 C -0.167 4.167 12 C -0.204 4.204 13 C 0.053 3.947 14 C -0.502 4.502 15 H 0.074 0.926 16 C 0.031 3.969 17 N -0.840 5.840 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.146 4.146 23 C -0.138 4.138 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.109 0.891 29 H 0.343 0.657 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.285 0.715 38 H 0.109 0.891 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -4.707 -14.109 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 H 0.082 0.918 4 C -0.052 4.052 5 N -0.306 5.306 6 C -0.096 4.096 7 C -0.245 4.245 8 C -0.211 4.211 9 O -0.245 6.245 10 C -0.026 4.026 11 C -0.186 4.186 12 C -0.224 4.224 13 C 0.051 3.949 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.468 5.468 18 Si 0.804 3.196 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.183 1.183 22 C -0.165 4.165 23 C -0.157 4.157 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.127 0.873 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.265 -4.363 -14.326 15.146 hybrid contribution 0.094 -0.336 1.224 1.273 sum -2.171 -4.699 -13.102 14.087 Atomic orbital electron populations 1.22263 0.93969 1.03271 1.03262 1.22508 0.94727 0.96918 0.83735 0.91827 1.22097 0.87250 0.99633 0.96262 1.60210 1.07987 1.57738 1.04665 1.22562 0.91688 0.99868 0.95467 1.23463 1.03974 0.94741 1.02284 1.23168 0.99023 0.97649 1.01294 1.85820 1.83130 1.38444 1.17119 1.18592 1.05457 0.91442 0.87092 1.20707 1.05215 0.93877 0.98764 1.20847 1.09193 0.99027 0.93333 1.17929 0.91781 0.92140 0.93070 1.19706 1.13427 1.15749 1.04369 0.90831 1.26697 0.93257 0.94567 1.03606 1.69874 1.08800 1.31120 1.36966 0.85185 0.78448 0.79352 0.76567 1.18763 1.19463 1.18327 1.20913 1.04290 0.94172 0.97166 1.20013 1.03703 0.99646 0.92319 0.93141 0.88706 0.91486 0.93740 0.87305 0.83770 0.85649 0.89877 0.87063 0.86848 0.90000 0.85588 0.87918 0.90448 0.87302 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 9.18 71.98 0.66 -3.50 16 2 C 0.08 2.28 2.49 30.59 0.08 2.36 16 3 H 0.06 2.04 6.24 -2.39 -0.01 2.02 16 4 C 0.08 1.79 5.27 86.30 0.45 2.25 16 5 N -0.68 -17.82 6.78 -491.53 -3.33 -21.15 16 6 C 0.01 0.30 6.31 44.92 0.28 0.58 16 7 C -0.21 -3.98 10.23 30.62 0.31 -3.67 16 8 C -0.17 -3.38 10.46 30.62 0.32 -3.06 16 9 O -0.33 -12.55 9.12 -89.90 -0.82 -13.37 16 10 C 0.02 0.82 6.63 22.79 0.15 0.97 16 11 C -0.17 -7.45 8.20 22.11 0.18 -7.27 16 12 C -0.20 -10.23 9.74 22.48 0.22 -10.02 16 13 C 0.05 2.93 5.55 -21.28 -0.12 2.81 16 14 C -0.50 -27.79 9.05 23.40 0.21 -27.58 16 15 H 0.07 3.92 7.88 -2.91 -0.02 3.90 16 16 C 0.03 1.62 5.22 85.23 0.44 2.06 16 17 N -0.84 -45.36 10.88 21.82 0.24 -45.13 16 18 Si 0.98 39.38 29.58 68.60 2.03 41.41 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 22 C -0.15 -7.93 8.61 22.49 0.19 -7.74 16 23 C -0.14 -6.77 9.92 22.11 0.22 -6.55 16 24 H 0.05 1.43 6.99 -2.38 -0.02 1.41 16 25 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.34 10.41 7.91 -89.69 -0.71 9.70 16 30 H 0.13 2.09 7.90 -2.39 -0.02 2.07 16 31 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.13 4.79 5.43 -2.91 -0.02 4.78 16 36 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 38 H 0.11 6.17 6.22 -2.91 -0.02 6.15 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -61.01 322.60 2.06 -58.95 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.33 Total: 37.66 kcal Atomic # 6 Polarization: -61.98 SS G_CDS: 3.61 Total: -58.37 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -3.10 Total: -66.27 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.82 Total: -13.37 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -61.01 2.06 -58.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699417838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.869 kcal (2) G-P(sol) polarization free energy of solvation -61.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds